FvH4_5g15341

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000118
Physical Location & Seq
Forward (+)
8698389 .. 8699196
808 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g15341.t1

Sequence Viewer

Length: 360 bp
ATGGAAGCGAACTTGAATGGATTCTTGTCATTGCCGGATGTGGAGCGGACGTCCGTACCAGCCTTAAAGTGCGGACGTCCGTCCGTTCTCCACCCTCCAGCGACGGCGACGGCGCGCCTCCACCCCAGAAGACTCCAGCAGCGTCCCCGACCACTTTCCCTCCCCGGCGAGTCCATTCTTTTCCGGTTTTCCGGTGAGATCACCGAAAACTTCAAACAAAGTCAATCTTGCCGGAAACTGGAAAAAAACGGACTCGCCGGGAAAGGGAAGTGGTCGGGGACGCTGCTGGAGTCTTCTGAGGTGGAGGCGCGCCGTCGCCGGCGCCGGAGGATGGAGAACGGATGGACGTCCGCATTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

120

Amino Acids

13.44

Weight (kDa)

11.23

Isoelectric Point (pI)

74.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000118)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01361 FvH4_1g07161 FvH4_1g07431 FvH4_1g07821 FvH4_1g08223 FvH4_1g10041 FvH4_1g12132 FvH4_1g15053 FvH4_1g18161 FvH4_1g18400 FvH4_1g18931 FvH4_1g19242 FvH4_1g19461 FvH4_1g20550 FvH4_1g21381 FvH4_1g21542 FvH4_1g22102 FvH4_1g23991 FvH4_1g24542 FvH4_1g24951 FvH4_1g24960 FvH4_1g25272 FvH4_1g25552 FvH4_1g25771 FvH4_1g28771 FvH4_1g29201 FvH4_1g29611 FvH4_2g01181 FvH4_2g02491 FvH4_2g04621 FvH4_2g04631 FvH4_2g07460 FvH4_2g08540 FvH4_2g08550 FvH4_2g09292 FvH4_2g10501 FvH4_2g12101 FvH4_2g12220 FvH4_2g12551 FvH4_2g14071 FvH4_2g14241 FvH4_2g15041 FvH4_2g15311 FvH4_2g18971 FvH4_2g19220 FvH4_2g19260 FvH4_2g19611 FvH4_2g19652 FvH4_2g20211 FvH4_2g20231 FvH4_2g21541 FvH4_2g22380 FvH4_2g27712 FvH4_2g28171 FvH4_2g29879 FvH4_2g32391 FvH4_3g02171 FvH4_3g05531 FvH4_3g09750 FvH4_3g10310 FvH4_3g10460 FvH4_3g13172 FvH4_3g15232 FvH4_3g18481 FvH4_3g18621 FvH4_3g20504 FvH4_3g20812 FvH4_3g22320 FvH4_3g22930 FvH4_3g22940 FvH4_3g23752 FvH4_3g24791 FvH4_3g26411 FvH4_3g26432 FvH4_3g27201 FvH4_3g27862 FvH4_3g28871 FvH4_3g28954 FvH4_3g29131 FvH4_3g29832 FvH4_3g29922 FvH4_3g30190 FvH4_3g32231 FvH4_3g32250 FvH4_3g33460 FvH4_3g34670 FvH4_3g36982 FvH4_3g37001 FvH4_3g38252 FvH4_3g38772 FvH4_3g40141 FvH4_3g40181 FvH4_3g42521 FvH4_4g00090 FvH4_4g00290 FvH4_4g00301 FvH4_4g00530 FvH4_4g00823 FvH4_4g02300 FvH4_4g02450 FvH4_4g03360 FvH4_4g04481 FvH4_4g04761 FvH4_4g06301 FvH4_4g06630 FvH4_4g08312 FvH4_4g08552 FvH4_4g10053 FvH4_4g11971 FvH4_4g13211 FvH4_4g13511 FvH4_4g15351 FvH4_4g16360 FvH4_4g16601 FvH4_4g18462 FvH4_4g22911 FvH4_4g23221 FvH4_4g24301 FvH4_4g24721 FvH4_4g27905 FvH4_4g28971 FvH4_4g29540 FvH4_4g30720 FvH4_4g31521 FvH4_4g33371 FvH4_4g34111 FvH4_4g35740 FvH4_5g00131 FvH4_5g02530 FvH4_5g02550 FvH4_5g02560 FvH4_5g02580 FvH4_5g03783 FvH4_5g05681 FvH4_5g05681 FvH4_5g09371 FvH4_5g09381 FvH4_5g14611 FvH4_5g15341 FvH4_5g19801 FvH4_5g20110 FvH4_5g20911 FvH4_5g22230 FvH4_5g25751 FvH4_5g26070 FvH4_5g26471 FvH4_5g27072 FvH4_5g27471 FvH4_5g27471 FvH4_5g27998 FvH4_5g28291 FvH4_5g30951 FvH4_5g31082 FvH4_5g31890 FvH4_5g32251 FvH4_5g34112 FvH4_5g37184 FvH4_5g37993 FvH4_5g38271 FvH4_6g00153 FvH4_6g00640 FvH4_6g05921 FvH4_6g08591 FvH4_6g09511 FvH4_6g10331 FvH4_6g10401 FvH4_6g14161 FvH4_6g14171 FvH4_6g18481 FvH4_6g19721 FvH4_6g19980 FvH4_6g20104 FvH4_6g20112 FvH4_6g21261 FvH4_6g21651 FvH4_6g22051 FvH4_6g23141 FvH4_6g24822 FvH4_6g25082 FvH4_6g25391 FvH4_6g25560 FvH4_6g26350 FvH4_6g27031 FvH4_6g27810 FvH4_6g27971 FvH4_6g28331 FvH4_6g29391 FvH4_6g30781 FvH4_6g32221 FvH4_6g34680 FvH4_6g36181 FvH4_6g36551 FvH4_6g37491 FvH4_6g37663 FvH4_6g39590 FvH4_6g40582 FvH4_6g43843 FvH4_6g50551 FvH4_7g00240 FvH4_7g00731 FvH4_7g01031 FvH4_7g03301 FvH4_7g08180 FvH4_7g08180 FvH4_7g10631 FvH4_7g19710 FvH4_7g23892 FvH4_7g25280 FvH4_7g25551 FvH4_7g30121 FvH4_7g31931 FvH4_7g32672 FvH4_c21g00040 FvH4_c2g00053
prunus_persica Prupe.1G448800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322451 RchiOBHm_Chr5g0015171
rosa_laevigata RLG00000003077 RLG00000018186 RLG00000030343
rosa_multiflora Rmu_co8096726.1_g000001
rosa_roxburghii Rroxscaffold_157G00438380 Rroxscaffold_1G00001730 Rroxscaffold_3G00236310
rosa_rugosa Rorug02G0236500
rosa_samantha Rh4BG247300 Rh6BG286200 Rh6CG287300 Rh7DG257500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 3 cut(s) 53, 79, 350
AccB1I GGYRCC 1 cut(s) 321
AccBSI CCGCTC 1 cut(s) 46
AccII CGCG 2 cut(s) 115, 310
AciI CCGC 3 cut(s) 46, 72, 351
AcyI GRCGYC 4 cut(s) 50, 76, 322, 347
AfaI GTAC 1 cut(s) 57
AfiI CCNNNNNNNGG 3 cut(s) 238, 264, 331
AgsI TTSAA 2 cut(s) 16, 214
ApeKI GCWGC 2 cut(s) 139, 283
AscI GGCGCGCC 2 cut(s) 113, 308
Asp700I GAANNNNTTC 1 cut(s) 20
AspLEI GCGC 5 cut(s) 115, 117, 310, 312, 324
AsuC2I CCSGG 2 cut(s) 165, 259
AsuHPI GGTGA 2 cut(s) 193, 206
BaeI ACNNNNGTAYC 2 cut(s) 39, 72
BanI GGYRCC 1 cut(s) 321
BbsI GAAGAC 2 cut(s) 136, 285
BbvI GCAGC 2 cut(s) 151, 270
BccI CCATC 2 cut(s) 325, 336
BceAI ACGGC 3 cut(s) 120, 126, 297
BcnI CCSGG 2 cut(s) 165, 259
BfoI RGCGCY 1 cut(s) 325
BisI GCNGC 2 cut(s) 140, 284
BlsI GCNGC 2 cut(s) 141, 285
Bme1390I CCNGG 2 cut(s) 165, 259
BmiI GGNNCC 1 cut(s) 323
BmrFI CCNGG 2 cut(s) 165, 259
BoxI GACNNNNGTC 1 cut(s) 79
BpiI GAAGAC 2 cut(s) 136, 285
BpmI CTGGAG 3 cut(s) 81, 119, 308
BpuMI CCSGG 2 cut(s) 165, 259
BsaHI GRCGYC 4 cut(s) 50, 76, 322, 347
BsaJI CCNNGG 1 cut(s) 163
BsaWI WCCGGW 2 cut(s) 183, 191
BsaXI ACNNNNNCTCC 4 cut(s) 35, 65, 144, 174
Bsc4I CCNNNNNNNGG 3 cut(s) 238, 264, 331
Bse118I RCCGGY 1 cut(s) 318
Bse1I ACTGG 1 cut(s) 243
Bse3DI GCAATG 1 cut(s) 29
BseDI CCNNGG 1 cut(s) 163
BseGI GGATG 3 cut(s) 43, 336, 347
BseLI CCNNNNNNNGG 3 cut(s) 238, 264, 331
BseMI GCAATG 1 cut(s) 29
BseMII CTCAG 1 cut(s) 288
BseNI ACTGG 1 cut(s) 243
BsePI GCGCGC 2 cut(s) 113, 308
BseXI GCAGC 2 cut(s) 151, 270
Bsh1236I CGCG 2 cut(s) 115, 310
BshNI GGYRCC 1 cut(s) 321
BsiSI CCGG 8 cut(s) 35, 165, 184, 192, 232, 258, 319, 325
BslFI GGGAC 2 cut(s) 129, 292
BslI CCNNNNNNNGG 3 cut(s) 238, 264, 331
BsmFI GGGAC 2 cut(s) 129, 292
Bsp143I GATC 1 cut(s) 198
BspACI CCGC 3 cut(s) 46, 72, 351
BspCNI CTCAG 1 cut(s) 289
BspFNI CGCG 2 cut(s) 115, 310
BspLI GGNNCC 1 cut(s) 323
BspT107I GGYRCC 1 cut(s) 321
BsrBI CCGCTC 1 cut(s) 46
BsrDI GCAATG 1 cut(s) 29
BsrFI RCCGGY 1 cut(s) 318
BsrI ACTGG 1 cut(s) 243
BssAI RCCGGY 1 cut(s) 318
BssECI CCNNGG 1 cut(s) 163
BssHII GCGCGC 2 cut(s) 113, 308
BssMI GATC 1 cut(s) 198
BssNI GRCGYC 4 cut(s) 50, 76, 322, 347
BstACI GRCGYC 4 cut(s) 50, 76, 322, 347
BstC8I GCNNGC 3 cut(s) 115, 310, 320
BstDEI CTNAG 1 cut(s) 297
BstF5I GGATG 3 cut(s) 43, 336, 347
BstFNI CGCG 2 cut(s) 115, 310
BstH2I RGCGCY 1 cut(s) 325
BstHHI GCGC 5 cut(s) 115, 117, 310, 312, 324
BstKTI GATC 1 cut(s) 201
BstMBI GATC 1 cut(s) 198
BstPAI GACNNNNGTC 1 cut(s) 79
BstSCI CCNGG 2 cut(s) 163, 257
BstUI CGCG 2 cut(s) 115, 310
BstV1I GCAGC 2 cut(s) 151, 270
BstV2I GAAGAC 2 cut(s) 136, 285
BtsCI GGATG 3 cut(s) 43, 336, 347
Cac8I GCNNGC 3 cut(s) 115, 310, 320
CfoI GCGC 5 cut(s) 115, 117, 310, 312, 324
Cfr10I RCCGGY 1 cut(s) 318
CseI GACGC 2 cut(s) 131, 289
Csp6I GTAC 1 cut(s) 56
CviJI RGCY 1 cut(s) 62
CviKI_1 RGCY 1 cut(s) 62
CviQI GTAC 1 cut(s) 56
DdeI CTNAG 1 cut(s) 297
DinI GGCGCC 1 cut(s) 323
DpnI GATC 1 cut(s) 200
DpnII GATC 1 cut(s) 198
EgeI GGCGCC 1 cut(s) 323
EheI GGCGCC 1 cut(s) 323
FalI AAGNNNNNCTT 2 cut(s) 211, 243
FaqI GGGAC 2 cut(s) 129, 292
Fnu4HI GCNGC 2 cut(s) 140, 284
FokI GGATG 3 cut(s) 50, 343, 354
Fsp4HI GCNGC 2 cut(s) 140, 284
GlaI GCGC 5 cut(s) 114, 116, 309, 311, 323
GluI GCNGC 2 cut(s) 140, 284
GsuI CTGGAG 3 cut(s) 81, 119, 308
HaeII RGCGCY 1 cut(s) 325
HapII CCGG 8 cut(s) 35, 165, 184, 192, 232, 258, 319, 325
HgaI GACGC 2 cut(s) 131, 289
HhaI GCGC 5 cut(s) 115, 117, 310, 312, 324
Hin1I GRCGYC 4 cut(s) 50, 76, 322, 347
Hin6I GCGC 5 cut(s) 113, 115, 308, 310, 322
HinP1I GCGC 5 cut(s) 113, 115, 308, 310, 322
HinfI GANTC 5 cut(s) 21, 132, 170, 252, 290
HpaII CCGG 8 cut(s) 35, 165, 184, 192, 232, 258, 319, 325
HphI GGTGA 2 cut(s) 193, 206
Hpy188I TCNGA 1 cut(s) 298
Hpy99I CGWCG 3 cut(s) 106, 112, 318
HpyCH4IV ACGT 3 cut(s) 50, 76, 347
HpyF3I CTNAG 1 cut(s) 297
HpySE526I ACGT 3 cut(s) 50, 76, 347
Hsp92I GRCGYC 4 cut(s) 50, 76, 322, 347
HspAI GCGC 5 cut(s) 113, 115, 308, 310, 322
KasI GGCGCC 1 cut(s) 321
KroI GCCGGC 1 cut(s) 318
KroNI GCCGGC 1 cut(s) 320
Kzo9I GATC 1 cut(s) 198
LmnI GCTCC 1 cut(s) 43
Lsp1109I GCAGC 2 cut(s) 151, 270
MaeII ACGT 3 cut(s) 50, 76, 347
MalI GATC 1 cut(s) 200
MbiI CCGCTC 1 cut(s) 46
MboI GATC 1 cut(s) 198
MboII GAAGA 2 cut(s) 141, 285
Mly113I GGCGCC 1 cut(s) 322
MlyI GAGTC 4 cut(s) 126, 179, 246, 299
MnlI CCTC 6 cut(s) 105, 128, 170, 292, 298, 321
MreI CGCCGGCG 1 cut(s) 318
MroNI GCCGGC 1 cut(s) 318
MroXI GAANNNNTTC 1 cut(s) 20
MseI TTAA 2 cut(s) 65, 358
MspI CCGG 8 cut(s) 35, 165, 184, 192, 232, 258, 319, 325
MspR9I CCNGG 2 cut(s) 165, 259
MvnI CGCG 2 cut(s) 115, 310
NaeI GCCGGC 1 cut(s) 320
NarI GGCGCC 1 cut(s) 322
NciI CCSGG 2 cut(s) 165, 259
NdeII GATC 1 cut(s) 198
NgoMIV GCCGGC 1 cut(s) 318
NlaIV GGNNCC 1 cut(s) 323
PalAI GGCGCGCC 2 cut(s) 113, 308
PauI GCGCGC 2 cut(s) 113, 308
PdiI GCCGGC 1 cut(s) 320
PdmI GAANNNNTTC 1 cut(s) 20
PfeI GAWTC 1 cut(s) 21
PkrI GCNGC 2 cut(s) 141, 285
PleI GAGTC 4 cut(s) 126, 178, 246, 298
PluTI GGCGCC 1 cut(s) 325
PpsI GAGTC 4 cut(s) 126, 178, 246, 298
PshAI GACNNNNGTC 1 cut(s) 79
PspN4I GGNNCC 1 cut(s) 323
PteI GCGCGC 2 cut(s) 113, 308
RsaI GTAC 1 cut(s) 57
RsaNI GTAC 1 cut(s) 56
SaqAI TTAA 2 cut(s) 65, 358
SatI GCNGC 2 cut(s) 140, 284
Sau3AI GATC 1 cut(s) 198
SchI GAGTC 4 cut(s) 126, 179, 246, 299
ScrFI CCNGG 2 cut(s) 165, 259
SetI ASST 4 cut(s) 53, 79, 303, 350
SfoI GGCGCC 1 cut(s) 323
SgrAI CRCCGGYG 1 cut(s) 318
SgsI GGCGCGCC 2 cut(s) 113, 308
SsiI CCGC 3 cut(s) 46, 72, 351
SspDI GGCGCC 1 cut(s) 321
StyD4I CCNGG 2 cut(s) 163, 257
TaiI ACGT 3 cut(s) 53, 79, 350
TfiI GAWTC 1 cut(s) 21
Tru1I TTAA 2 cut(s) 65, 358
Tru9I TTAA 2 cut(s) 65, 358
TseI GCWGC 2 cut(s) 139, 283
TspGWI ACGGA 5 cut(s) 43, 69, 73, 264, 354
XmnI GAANNNNTTC 1 cut(s) 20
ZraI GACGTC 3 cut(s) 51, 77, 348
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.