Retrotransposon gag protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotrans_gag | PF03732 | 12 - 81 | 2.2e-12 | Retrotransposon gag protein |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 405 |
| AciI | CCGC | 1 cut(s) | 403 |
| AcsI | RAATTY | 1 cut(s) | 121 |
| AfaI | GTAC | 1 cut(s) | 362 |
| AgsI | TTSAA | 4 cut(s) | 8, 67, 121, 170 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 361, 393 |
| AluBI | AGCT | 5 cut(s) | 29, 58, 175, 296, 308 |
| AluI | AGCT | 5 cut(s) | 29, 58, 175, 296, 308 |
| Alw21I | GWGCWC | 2 cut(s) | 177, 284 |
| AoxI | GGCC | 1 cut(s) | 159 |
| ApeKI | GCWGC | 1 cut(s) | 422 |
| ApoI | RAATTY | 1 cut(s) | 121 |
| AspS9I | GGNCC | 1 cut(s) | 160 |
| AsuHPI | GGTGA | 1 cut(s) | 35 |
| BanII | GRGCYC | 1 cut(s) | 177 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 252, 284 |
| Bbv12I | GWGCWC | 2 cut(s) | 177, 284 |
| BbvI | GCAGC | 1 cut(s) | 434 |
| BccI | CCATC | 1 cut(s) | 389 |
| BisI | GCNGC | 1 cut(s) | 423 |
| BlsI | GCNGC | 1 cut(s) | 424 |
| BmgT120I | GGNCC | 1 cut(s) | 160 |
| BmiI | GGNNCC | 1 cut(s) | 204 |
| BpuEI | CTTGAG | 1 cut(s) | 218 |
| BsaWI | WCCGGW | 1 cut(s) | 60 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 389, 419 |
| BseGI | GGATG | 1 cut(s) | 446 |
| BseRI | GAGGAG | 3 cut(s) | 95, 215, 428 |
| BseXI | GCAGC | 1 cut(s) | 434 |
| BshFI | GGCC | 1 cut(s) | 161 |
| BsiHKAI | GWGCWC | 2 cut(s) | 177, 284 |
| BsiSI | CCGG | 1 cut(s) | 61 |
| BsnI | GGCC | 1 cut(s) | 161 |
| Bsp1286I | GDGCHC | 2 cut(s) | 177, 284 |
| Bsp143I | GATC | 1 cut(s) | 109 |
| BspACI | CCGC | 1 cut(s) | 403 |
| BspANI | GGCC | 1 cut(s) | 161 |
| BspLI | GGNNCC | 1 cut(s) | 204 |
| BspQI | GCTCTTC | 1 cut(s) | 165 |
| BsrBI | CCGCTC | 1 cut(s) | 405 |
| BssMI | GATC | 1 cut(s) | 109 |
| Bst4CI | ACNGT | 2 cut(s) | 145, 286 |
| Bst6I | CTCTTC | 1 cut(s) | 165 |
| BstDEI | CTNAG | 1 cut(s) | 182 |
| BstF5I | GGATG | 1 cut(s) | 446 |
| BstKTI | GATC | 1 cut(s) | 112 |
| BstMBI | GATC | 1 cut(s) | 109 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 10 |
| BstV1I | GCAGC | 1 cut(s) | 434 |
| BsuRI | GGCC | 1 cut(s) | 161 |
| BtsCI | GGATG | 1 cut(s) | 446 |
| Cfr13I | GGNCC | 1 cut(s) | 160 |
| Csp6I | GTAC | 1 cut(s) | 361 |
| CviAII | CATG | 2 cut(s) | 157, 178 |
| CviJI | RGCY | 9 cut(s) | 29, 58, 161, 175, 205, 237, 245, 296, 308 |
| CviKI_1 | RGCY | 9 cut(s) | 29, 58, 161, 175, 205, 237, 245, 296, 308 |
| CviQI | GTAC | 1 cut(s) | 361 |
| DdeI | CTNAG | 1 cut(s) | 182 |
| DpnI | GATC | 1 cut(s) | 111 |
| DpnII | GATC | 1 cut(s) | 109 |
| Eam1104I | CTCTTC | 1 cut(s) | 165 |
| EarI | CTCTTC | 1 cut(s) | 165 |
| Ecl136II | GAGCTC | 1 cut(s) | 175 |
| Eco24I | GRGCYC | 1 cut(s) | 177 |
| Eco53kI | GAGCTC | 1 cut(s) | 175 |
| EcoICRI | GAGCTC | 1 cut(s) | 175 |
| EcoT38I | GRGCYC | 1 cut(s) | 177 |
| FaeI | CATG | 2 cut(s) | 160, 181 |
| FaiI | YATR | 8 cut(s) | 18, 20, 158, 179, 210, 215, 241, 303 |
| FatI | CATG | 2 cut(s) | 156, 177 |
| FauNDI | CATATG | 1 cut(s) | 18 |
| Fnu4HI | GCNGC | 1 cut(s) | 423 |
| FokI | GGATG | 1 cut(s) | 433 |
| FriOI | GRGCYC | 1 cut(s) | 177 |
| Fsp4HI | GCNGC | 1 cut(s) | 423 |
| GluI | GCNGC | 1 cut(s) | 423 |
| HaeIII | GGCC | 1 cut(s) | 161 |
| HapII | CCGG | 1 cut(s) | 61 |
| Hin1II | CATG | 2 cut(s) | 160, 181 |
| HincII | GTYRAC | 2 cut(s) | 101, 289 |
| HindII | GTYRAC | 2 cut(s) | 101, 289 |
| HindIII | AAGCTT | 2 cut(s) | 294, 306 |
| HinfI | GANTC | 1 cut(s) | 225 |
| HpaII | CCGG | 1 cut(s) | 61 |
| HphI | GGTGA | 1 cut(s) | 35 |
| Hpy166II | GTNNAC | 3 cut(s) | 101, 137, 289 |
| Hpy188I | TCNGA | 2 cut(s) | 33, 279 |
| Hpy188III | TCNNGA | 1 cut(s) | 197 |
| Hpy8I | GTNNAC | 3 cut(s) | 101, 137, 289 |
| HpyAV | CCTTC | 1 cut(s) | 89 |
| HpyCH4III | ACNGT | 2 cut(s) | 145, 286 |
| HpyCH4V | TGCA | 2 cut(s) | 13, 130 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 10 |
| HpyF3I | CTNAG | 1 cut(s) | 182 |
| Hsp92II | CATG | 2 cut(s) | 160, 181 |
| Kzo9I | GATC | 1 cut(s) | 109 |
| LguI | GCTCTTC | 1 cut(s) | 165 |
| LmnI | GCTCC | 4 cut(s) | 34, 63, 202, 410 |
| LpnPI | CCDG | 2 cut(s) | 74, 399 |
| Lsp1109I | GCAGC | 1 cut(s) | 434 |
| MaeIII | GTNAC | 5 cut(s) | 149, 188, 217, 262, 416 |
| MalI | GATC | 1 cut(s) | 111 |
| MbiI | CCGCTC | 1 cut(s) | 405 |
| MboI | GATC | 1 cut(s) | 109 |
| MboII | GAAGA | 3 cut(s) | 182, 320, 376 |
| MhlI | GDGCHC | 2 cut(s) | 177, 284 |
| MluCI | AATT | 1 cut(s) | 121 |
| MnlI | CCTC | 7 cut(s) | 116, 193, 239, 348, 383, 446, 449 |
| MslI | CAYNNNNRTG | 1 cut(s) | 21 |
| MspI | CCGG | 1 cut(s) | 61 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 10 |
| NdeI | CATATG | 1 cut(s) | 18 |
| NdeII | GATC | 1 cut(s) | 109 |
| NlaIII | CATG | 2 cut(s) | 160, 181 |
| NlaIV | GGNNCC | 1 cut(s) | 204 |
| NmuCI | GTSAC | 3 cut(s) | 149, 188, 416 |
| PciSI | GCTCTTC | 1 cut(s) | 165 |
| PfeI | GAWTC | 1 cut(s) | 225 |
| PkrI | GCNGC | 1 cut(s) | 424 |
| Psp124BI | GAGCTC | 1 cut(s) | 177 |
| PspN4I | GGNNCC | 1 cut(s) | 204 |
| PspPI | GGNCC | 1 cut(s) | 160 |
| RsaI | GTAC | 1 cut(s) | 362 |
| RsaNI | GTAC | 1 cut(s) | 361 |
| RseI | CAYNNNNRTG | 1 cut(s) | 21 |
| SacI | GAGCTC | 1 cut(s) | 177 |
| SapI | GCTCTTC | 1 cut(s) | 165 |
| SatI | GCNGC | 1 cut(s) | 423 |
| Sau3AI | GATC | 1 cut(s) | 109 |
| Sau96I | GGNCC | 1 cut(s) | 160 |
| SduI | GDGCHC | 2 cut(s) | 177, 284 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 21 |
| SmlI | CTYRAG | 1 cut(s) | 197 |
| SmoI | CTYRAG | 1 cut(s) | 197 |
| Sse9I | AATT | 1 cut(s) | 121 |
| SsiI | CCGC | 1 cut(s) | 403 |
| SstI | GAGCTC | 1 cut(s) | 177 |
| TaaI | ACNGT | 2 cut(s) | 145, 286 |
| TaqI | TCGA | 3 cut(s) | 108, 223, 331 |
| TasI | AATT | 1 cut(s) | 121 |
| TatI | WGTACW | 1 cut(s) | 360 |
| TfiI | GAWTC | 1 cut(s) | 225 |
| TseFI | GTSAC | 3 cut(s) | 149, 188, 416 |
| TseI | GCWGC | 1 cut(s) | 422 |
| Tsp45I | GTSAC | 3 cut(s) | 149, 188, 416 |
| TspDTI | ATGAA | 1 cut(s) | 68 |
| XapI | RAATTY | 1 cut(s) | 121 |