Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0000118

Physical Location & Seq

Genomic Coordinates Reverse (-)

1449615 .. 1451482

Gene Structure 1868 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g01031.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGGACACCACACCAGAAATGCAGTACCGCACCATACCGCACCGTTTTAAACCTCCGTTTCAGATACGGACGTCCGCACTGCTTTACGGTGCAGATTTCTCTCTGTTCACCATCGTATGGCGCCAGCGAGGGCGCGCCTCCACCTCAGCGGACTCCAGCAGCTTCCCGGACCCCTTTCCATCCCCGACGAGTCCGTTGAATTCCAGTTTTCCGGCCAGATCACCCAAAACTTCAAACAAAGTCAATCAGGCCGGAAAACTGGAATTCGGCGGACTCGCCGGGGATGGAAAGTGGTCGGGGAAGTTGCTGGAGTCCGCTAGGGTGGAGACGCGCCCTCGCCGGCGCTGTACGGTGGCGAACGGAGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005801 GO:0005886 GO:0006810 GO:0008150 GO:0008515 GO:0008643 GO:0009705 GO:0012505 GO:0015144 GO:0015154 GO:0015157 GO:0015766 GO:0015770 GO:0015772 GO:0016020 GO:0022857 GO:0031090 GO:0034219 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_1 MFS_2

Protein Analysis

123

Amino Acids

13.43

Weight (kDa)

10.64

Isoelectric Point (pI)

47.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000118)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g01361 FvH4_1g07161 FvH4_1g07431 FvH4_1g07821 FvH4_1g08223 FvH4_1g10041 FvH4_1g12132 FvH4_1g15053 FvH4_1g18161 FvH4_1g18400 FvH4_1g18931 FvH4_1g19242 FvH4_1g19461 FvH4_1g20550 FvH4_1g21381 FvH4_1g21542 FvH4_1g22102 FvH4_1g23991 FvH4_1g24542 FvH4_1g24951 FvH4_1g24960 FvH4_1g25272 FvH4_1g25552 FvH4_1g25771 FvH4_1g28771 FvH4_1g29201 FvH4_1g29611 FvH4_2g01181 FvH4_2g02491 FvH4_2g04621 FvH4_2g04631 FvH4_2g07460 FvH4_2g08540 FvH4_2g08550 FvH4_2g09292 FvH4_2g10501 FvH4_2g12101 FvH4_2g12220 FvH4_2g12551 FvH4_2g14071 FvH4_2g14241 FvH4_2g15041 FvH4_2g15311 FvH4_2g18971 FvH4_2g19220 FvH4_2g19260 FvH4_2g19611 FvH4_2g19652 FvH4_2g20211 FvH4_2g20231 FvH4_2g21541 FvH4_2g22380 FvH4_2g27712 FvH4_2g28171 FvH4_2g29879 FvH4_2g32391 FvH4_3g02171 FvH4_3g05531 FvH4_3g09750 FvH4_3g10310 FvH4_3g10460 FvH4_3g13172 FvH4_3g15232 FvH4_3g18481 FvH4_3g18621 FvH4_3g20504 FvH4_3g20812 FvH4_3g22320 FvH4_3g22930 FvH4_3g22940 FvH4_3g23752 FvH4_3g24791 FvH4_3g26411 FvH4_3g26432 FvH4_3g27201 FvH4_3g27862 FvH4_3g28871 FvH4_3g28954 FvH4_3g29131 FvH4_3g29832 FvH4_3g29922 FvH4_3g30190 FvH4_3g32231 FvH4_3g32250 FvH4_3g33460 FvH4_3g34670 FvH4_3g36982 FvH4_3g37001 FvH4_3g38252 FvH4_3g38772 FvH4_3g40141 FvH4_3g40181 FvH4_3g42521 FvH4_4g00090 FvH4_4g00290 FvH4_4g00301 FvH4_4g00530 FvH4_4g00823 FvH4_4g02300 FvH4_4g02450 FvH4_4g03360 FvH4_4g04481 FvH4_4g04761 FvH4_4g06301 FvH4_4g06630 FvH4_4g08312 FvH4_4g08552 FvH4_4g10053 FvH4_4g11971 FvH4_4g13211 FvH4_4g13511 FvH4_4g15351 FvH4_4g16360 FvH4_4g16601 FvH4_4g18462 FvH4_4g22911 FvH4_4g23221 FvH4_4g24301 FvH4_4g24721 FvH4_4g27905 FvH4_4g28971 FvH4_4g29540 FvH4_4g30720 FvH4_4g31521 FvH4_4g33371 FvH4_4g34111 FvH4_4g35740 FvH4_5g00131 FvH4_5g02530 FvH4_5g02550 FvH4_5g02560 FvH4_5g02580 FvH4_5g03783 FvH4_5g05681 FvH4_5g05681 FvH4_5g09371 FvH4_5g09381 FvH4_5g14611 FvH4_5g15341 FvH4_5g19801 FvH4_5g20110 FvH4_5g20911 FvH4_5g22230 FvH4_5g25751 FvH4_5g26070 FvH4_5g26471 FvH4_5g27072 FvH4_5g27471 FvH4_5g27471 FvH4_5g27998 FvH4_5g28291 FvH4_5g30951 FvH4_5g31082 FvH4_5g31890 FvH4_5g32251 FvH4_5g34112 FvH4_5g37184 FvH4_5g37993 FvH4_5g38271 FvH4_6g00153 FvH4_6g00640 FvH4_6g05921 FvH4_6g08591 FvH4_6g09511 FvH4_6g10331 FvH4_6g10401 FvH4_6g14161 FvH4_6g14171 FvH4_6g18481 FvH4_6g19721 FvH4_6g19980 FvH4_6g20104 FvH4_6g20112 FvH4_6g21261 FvH4_6g21651 FvH4_6g22051 FvH4_6g23141 FvH4_6g24822 FvH4_6g25082 FvH4_6g25391 FvH4_6g25560 FvH4_6g26350 FvH4_6g27031 FvH4_6g27810 FvH4_6g27971 FvH4_6g28331 FvH4_6g29391 FvH4_6g30781 FvH4_6g32221 FvH4_6g34680 FvH4_6g36181 FvH4_6g36551 FvH4_6g37491 FvH4_6g37663 FvH4_6g39590 FvH4_6g40582 FvH4_6g43843 FvH4_6g50551 FvH4_7g00240 FvH4_7g00731 FvH4_7g01031 FvH4_7g03301 FvH4_7g08180 FvH4_7g08180 FvH4_7g10631 FvH4_7g19710 FvH4_7g23892 FvH4_7g25280 FvH4_7g25551 FvH4_7g30121 FvH4_7g31931 FvH4_7g32672 FvH4_c21g00040 FvH4_c2g00053
prunus_persica	Prupe.1G448800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0322451 RchiOBHm_Chr5g0015171
rosa_laevigata	RLG00000003077 RLG00000018186 RLG00000030343
rosa_multiflora	Rmu_co8096726.1_g000001
rosa_roxburghii	Rroxscaffold_157G00438380 Rroxscaffold_1G00001730 Rroxscaffold_3G00236310
rosa_rugosa	Rorug02G0236500
rosa_samantha	Rh4BG247300 Rh6BG286200 Rh6CG287300 Rh7DG257500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	74
AccB1I	GGYRCC	1 cut(s)	120
AccB7I	CCANNNNNTGG	1 cut(s)	117
AccII	CGCG	2 cut(s)	135, 331
AciI	CCGC	6 cut(s)	28, 38, 75, 149, 270, 315
AcoI	YGGCCR	1 cut(s)	213
AcsI	RAATTY	2 cut(s)	199, 263
AcyI	GRCGYC	2 cut(s)	71, 121
AfaI	GTAC	2 cut(s)	26, 349
AfiI	CCNNNNNNNGG	1 cut(s)	117
AgsI	TTSAA	2 cut(s)	199, 234
AluBI	AGCT	1 cut(s)	162
AluI	AGCT	1 cut(s)	162
Alw26I	GTCTC	1 cut(s)	320
AoxI	GGCC	2 cut(s)	213, 249
ApeKI	GCWGC	1 cut(s)	159
ApoI	RAATTY	2 cut(s)	199, 263
AscI	GGCGCGCC	1 cut(s)	133
AspLEI	GCGC	5 cut(s)	123, 135, 137, 333, 345
AspS9I	GGNCC	1 cut(s)	169
AsuC2I	CCSGG	2 cut(s)	167, 280
AsuHPI	GGTGA	2 cut(s)	100, 213
AvaII	GGWCC	1 cut(s)	169
BaeI	ACNNNNGTAYC	2 cut(s)	56, 89
BanI	GGYRCC	1 cut(s)	120
BbvCI	CCTCAGC	1 cut(s)	145
BbvI	GCAGC	1 cut(s)	171
BccI	CCATC	3 cut(s)	119, 187, 278
BcnI	CCSGG	2 cut(s)	167, 280
BcoDI	GTCTC	1 cut(s)	320
BfaI	CTAG	1 cut(s)	318
BfoI	RGCGCY	2 cut(s)	124, 346
BisI	GCNGC	1 cut(s)	160
BlsI	GCNGC	1 cut(s)	161
Bme1390I	CCNGG	2 cut(s)	167, 280
Bme18I	GGWCC	1 cut(s)	169
BmgT120I	GGNCC	1 cut(s)	169
BmiI	GGNNCC	2 cut(s)	122, 171
BmrFI	CCNGG	2 cut(s)	167, 280
BpmI	CTGGAG	2 cut(s)	139, 329
Bpu10I	CCTNAGC	1 cut(s)	145
BpuMI	CCSGG	2 cut(s)	167, 280
BsaHI	GRCGYC	2 cut(s)	71, 121
BsaJI	CCNNGG	1 cut(s)	279
Bsc4I	CCNNNNNNNGG	1 cut(s)	117
Bse118I	RCCGGY	1 cut(s)	339
Bse1I	ACTGG	2 cut(s)	204, 264
BseDI	CCNNGG	1 cut(s)	279
BseGI	GGATG	2 cut(s)	179, 289
BseLI	CCNNNNNNNGG	1 cut(s)	117
BseMII	CTCAG	1 cut(s)	159
BseNI	ACTGG	2 cut(s)	204, 264
BsePI	GCGCGC	1 cut(s)	133
BseXI	GCAGC	1 cut(s)	171
BsgI	GTGCAG	1 cut(s)	111
Bsh1236I	CGCG	2 cut(s)	135, 331
BshFI	GGCC	2 cut(s)	215, 251
BshNI	GGYRCC	1 cut(s)	120
BsiSI	CCGG	5 cut(s)	167, 212, 252, 279, 340
BslI	CCNNNNNNNGG	1 cut(s)	117
BsmAI	GTCTC	1 cut(s)	320
BsmBI	CGTCTC	1 cut(s)	320
BsnI	GGCC	2 cut(s)	215, 251
Bsp143I	GATC	1 cut(s)	218
BspACI	CCGC	6 cut(s)	28, 38, 75, 149, 270, 315
BspANI	GGCC	2 cut(s)	215, 251
BspCNI	CTCAG	1 cut(s)	158
BspFNI	CGCG	2 cut(s)	135, 331
BspLI	GGNNCC	2 cut(s)	122, 171
BspT107I	GGYRCC	1 cut(s)	120
BsrFI	RCCGGY	1 cut(s)	339
BsrI	ACTGG	2 cut(s)	204, 264
BssAI	RCCGGY	1 cut(s)	339
BssECI	CCNNGG	1 cut(s)	279
BssHII	GCGCGC	1 cut(s)	133
BssMI	GATC	1 cut(s)	218
BssNI	GRCGYC	2 cut(s)	71, 121
Bst4CI	ACNGT	3 cut(s)	44, 89, 352
BstACI	GRCGYC	2 cut(s)	71, 121
BstC8I	GCNNGC	3 cut(s)	125, 135, 341
BstDEI	CTNAG	1 cut(s)	145
BstF5I	GGATG	2 cut(s)	179, 289
BstFNI	CGCG	2 cut(s)	135, 331
BstH2I	RGCGCY	2 cut(s)	124, 346
BstHHI	GCGC	5 cut(s)	123, 135, 137, 333, 345
BstKTI	GATC	1 cut(s)	221
BstMAI	GTCTC	1 cut(s)	320
BstMBI	GATC	1 cut(s)	218
BstSCI	CCNGG	2 cut(s)	165, 278
BstUI	CGCG	2 cut(s)	135, 331
BstV1I	GCAGC	1 cut(s)	171
BsuRI	GGCC	2 cut(s)	215, 251
BtsCI	GGATG	2 cut(s)	179, 289
BtsI	GCAGTG	1 cut(s)	77
BtsIMutI	CAGTG	1 cut(s)	77
Cac8I	GCNNGC	3 cut(s)	125, 135, 341
CfoI	GCGC	5 cut(s)	123, 135, 137, 333, 345
Cfr10I	RCCGGY	1 cut(s)	339
Cfr13I	GGNCC	1 cut(s)	169
CseI	GACGC	1 cut(s)	337
Csp6I	GTAC	2 cut(s)	25, 348
CviJI	RGCY	3 cut(s)	162, 215, 251
CviKI_1	RGCY	3 cut(s)	162, 215, 251
CviQI	GTAC	2 cut(s)	25, 348
DdeI	CTNAG	1 cut(s)	145
DinI	GGCGCC	1 cut(s)	122
DpnI	GATC	1 cut(s)	220
DpnII	GATC	1 cut(s)	218
DraI	TTTAAA	1 cut(s)	49
EaeI	YGGCCR	1 cut(s)	213
EciI	GGCGGA	1 cut(s)	285
Eco47I	GGWCC	1 cut(s)	169
EcoRI	GAATTC	2 cut(s)	199, 263
EgeI	GGCGCC	1 cut(s)	122
EheI	GGCGCC	1 cut(s)	122
Esp3I	CGTCTC	1 cut(s)	320
FaiI	YATR	2 cut(s)	35, 118
Fnu4HI	GCNGC	1 cut(s)	160
FokI	GGATG	2 cut(s)	166, 296
Fsp4HI	GCNGC	1 cut(s)	160
FspBI	CTAG	1 cut(s)	318
GlaI	GCGC	5 cut(s)	122, 134, 136, 332, 344
GluI	GCNGC	1 cut(s)	160
GsuI	CTGGAG	2 cut(s)	139, 329
HaeII	RGCGCY	2 cut(s)	124, 346
HaeIII	GGCC	2 cut(s)	215, 251
HapII	CCGG	5 cut(s)	167, 212, 252, 279, 340
HgaI	GACGC	1 cut(s)	337
HhaI	GCGC	5 cut(s)	123, 135, 137, 333, 345
Hin1I	GRCGYC	2 cut(s)	71, 121
Hin6I	GCGC	5 cut(s)	121, 133, 135, 331, 343
HinP1I	GCGC	5 cut(s)	121, 133, 135, 331, 343
HinfI	GANTC	4 cut(s)	152, 190, 273, 311
HpaII	CCGG	5 cut(s)	167, 212, 252, 279, 340
HphI	GGTGA	2 cut(s)	100, 213
Hpy166II	GTNNAC	1 cut(s)	108
Hpy188I	TCNGA	1 cut(s)	63
Hpy8I	GTNNAC	1 cut(s)	108
Hpy99I	CGWCG	1 cut(s)	190
HpyCH4III	ACNGT	3 cut(s)	44, 89, 352
HpyCH4IV	ACGT	1 cut(s)	71
HpyCH4V	TGCA	2 cut(s)	22, 92
HpyF3I	CTNAG	1 cut(s)	145
HpySE526I	ACGT	1 cut(s)	71
Hsp92I	GRCGYC	2 cut(s)	71, 121
HspAI	GCGC	5 cut(s)	121, 133, 135, 331, 343
KasI	GGCGCC	1 cut(s)	120
KroI	GCCGGC	1 cut(s)	339
KroNI	GCCGGC	1 cut(s)	341
Kzo9I	GATC	1 cut(s)	218
Lsp1109I	GCAGC	1 cut(s)	171
MaeI	CTAG	1 cut(s)	318
MaeII	ACGT	1 cut(s)	71
MalI	GATC	1 cut(s)	220
MboI	GATC	1 cut(s)	218
MluCI	AATT	2 cut(s)	199, 263
Mly113I	GGCGCC	1 cut(s)	121
MlyI	GAGTC	4 cut(s)	146, 199, 267, 320
MnlI	CCTC	6 cut(s)	63, 122, 148, 154, 345, 356
MreI	CGCCGGCG	1 cut(s)	339
MroNI	GCCGGC	1 cut(s)	339
MseI	TTAA	1 cut(s)	48
MspA1I	CMGCKG	1 cut(s)	149
MspI	CCGG	5 cut(s)	167, 212, 252, 279, 340
MspR9I	CCNGG	2 cut(s)	167, 280
MvnI	CGCG	2 cut(s)	135, 331
NaeI	GCCGGC	1 cut(s)	341
NarI	GGCGCC	1 cut(s)	121
NciI	CCSGG	2 cut(s)	167, 280
NdeII	GATC	1 cut(s)	218
NgoMIV	GCCGGC	1 cut(s)	339
NlaIV	GGNNCC	2 cut(s)	122, 171
PalAI	GGCGCGCC	1 cut(s)	133
PauI	GCGCGC	1 cut(s)	133
PdiI	GCCGGC	1 cut(s)	341
PflMI	CCANNNNNTGG	1 cut(s)	117
PfoI	TCCNGGA	1 cut(s)	165
PkrI	GCNGC	1 cut(s)	161
PleI	GAGTC	4 cut(s)	146, 198, 267, 319
PluTI	GGCGCC	1 cut(s)	124
PpsI	GAGTC	4 cut(s)	146, 198, 267, 319
PspN4I	GGNNCC	2 cut(s)	122, 171
PspPI	GGNCC	1 cut(s)	169
PteI	GCGCGC	1 cut(s)	133
RsaI	GTAC	2 cut(s)	26, 349
RsaNI	GTAC	2 cut(s)	25, 348
SaqAI	TTAA	1 cut(s)	48
SatI	GCNGC	1 cut(s)	160
Sau3AI	GATC	1 cut(s)	218
Sau96I	GGNCC	1 cut(s)	169
SchI	GAGTC	4 cut(s)	146, 199, 267, 320
ScrFI	CCNGG	2 cut(s)	167, 280
SetI	ASST	4 cut(s)	55, 74, 146, 164
SfoI	GGCGCC	1 cut(s)	122
SgrAI	CRCCGGYG	1 cut(s)	339
SgsI	GGCGCGCC	1 cut(s)	133
SinI	GGWCC	1 cut(s)	169
Sse9I	AATT	2 cut(s)	199, 263
SsiI	CCGC	6 cut(s)	28, 38, 75, 149, 270, 315
SspDI	GGCGCC	1 cut(s)	120
SspMI	CTAG	1 cut(s)	318
StyD4I	CCNGG	2 cut(s)	165, 278
TaaI	ACNGT	3 cut(s)	44, 89, 352
TaiI	ACGT	1 cut(s)	74
TasI	AATT	2 cut(s)	199, 263
Tru1I	TTAA	1 cut(s)	48
Tru9I	TTAA	1 cut(s)	48
TscAI	CASTG	1 cut(s)	84
TseI	GCWGC	1 cut(s)	159
TspGWI	ACGGA	3 cut(s)	45, 82, 183
TspRI	CASTG	1 cut(s)	84
Van91I	CCANNNNNTGG	1 cut(s)	117
VpaK11BI	GGWCC	1 cut(s)	169
XapI	RAATTY	2 cut(s)	199, 263
XspI	CTAG	1 cut(s)	318
ZraI	GACGTC	1 cut(s)	72

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.