Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0000118

Physical Location & Seq

Genomic Coordinates Reverse (-)

6220267 .. 6227212

Gene Structure 6946 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g10401.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGACCAATATGATGCAAGTCGAACAAAAACCTTTGATTGCTCCAGGGATTTTCAACCTCATCAGGGGAATCACACAAGTTTGGGATGCTGATGTTGATGCATATTGGATGCTGAGACGGTACGGCGCCGCGCGAGGACGCGCCTCCACCCCAGCGGACTCCAGCAGCTTCCCCGACCACTTTCCATCCCCGGCGAGTTCGCCGAATTCCAGTTTTCCGGCTAGATCACCAAAAACTTCAAACAAAGTCAATCTGGCCGGAAAACTGGAATTCGACGGACTCACCGGGGATGGAAAGTGGTCGGGGAAGTTGCTGGAGTCGGCTGGGGTGGAGGCGCGCCTTCGCCGGCACCGTACGGTGGCGAACGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005801 GO:0005886 GO:0006810 GO:0008150 GO:0008515 GO:0008643 GO:0009705 GO:0012505 GO:0015144 GO:0015154 GO:0015157 GO:0015766 GO:0015770 GO:0015772 GO:0016020 GO:0022857 GO:0031090 GO:0034219 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_1 MFS_2

Protein Analysis

124

Amino Acids

13.39

Weight (kDa)

9.98

Isoelectric Point (pI)

46.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000118)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g01361 FvH4_1g07161 FvH4_1g07431 FvH4_1g07821 FvH4_1g08223 FvH4_1g10041 FvH4_1g12132 FvH4_1g15053 FvH4_1g18161 FvH4_1g18400 FvH4_1g18931 FvH4_1g19242 FvH4_1g19461 FvH4_1g20550 FvH4_1g21381 FvH4_1g21542 FvH4_1g22102 FvH4_1g23991 FvH4_1g24542 FvH4_1g24951 FvH4_1g24960 FvH4_1g25272 FvH4_1g25552 FvH4_1g25771 FvH4_1g28771 FvH4_1g29201 FvH4_1g29611 FvH4_2g01181 FvH4_2g02491 FvH4_2g04621 FvH4_2g04631 FvH4_2g07460 FvH4_2g08540 FvH4_2g08550 FvH4_2g09292 FvH4_2g10501 FvH4_2g12101 FvH4_2g12220 FvH4_2g12551 FvH4_2g14071 FvH4_2g14241 FvH4_2g15041 FvH4_2g15311 FvH4_2g18971 FvH4_2g19220 FvH4_2g19260 FvH4_2g19611 FvH4_2g19652 FvH4_2g20211 FvH4_2g20231 FvH4_2g21541 FvH4_2g22380 FvH4_2g27712 FvH4_2g28171 FvH4_2g29879 FvH4_2g32391 FvH4_3g02171 FvH4_3g05531 FvH4_3g09750 FvH4_3g10310 FvH4_3g10460 FvH4_3g13172 FvH4_3g15232 FvH4_3g18481 FvH4_3g18621 FvH4_3g20504 FvH4_3g20812 FvH4_3g22320 FvH4_3g22930 FvH4_3g22940 FvH4_3g23752 FvH4_3g24791 FvH4_3g26411 FvH4_3g26432 FvH4_3g27201 FvH4_3g27862 FvH4_3g28871 FvH4_3g28954 FvH4_3g29131 FvH4_3g29832 FvH4_3g29922 FvH4_3g30190 FvH4_3g32231 FvH4_3g32250 FvH4_3g33460 FvH4_3g34670 FvH4_3g36982 FvH4_3g37001 FvH4_3g38252 FvH4_3g38772 FvH4_3g40141 FvH4_3g40181 FvH4_3g42521 FvH4_4g00090 FvH4_4g00290 FvH4_4g00301 FvH4_4g00530 FvH4_4g00823 FvH4_4g02300 FvH4_4g02450 FvH4_4g03360 FvH4_4g04481 FvH4_4g04761 FvH4_4g06301 FvH4_4g06630 FvH4_4g08312 FvH4_4g08552 FvH4_4g10053 FvH4_4g11971 FvH4_4g13211 FvH4_4g13511 FvH4_4g15351 FvH4_4g16360 FvH4_4g16601 FvH4_4g18462 FvH4_4g22911 FvH4_4g23221 FvH4_4g24301 FvH4_4g24721 FvH4_4g27905 FvH4_4g28971 FvH4_4g29540 FvH4_4g30720 FvH4_4g31521 FvH4_4g33371 FvH4_4g34111 FvH4_4g35740 FvH4_5g00131 FvH4_5g02530 FvH4_5g02550 FvH4_5g02560 FvH4_5g02580 FvH4_5g03783 FvH4_5g05681 FvH4_5g05681 FvH4_5g09371 FvH4_5g09381 FvH4_5g14611 FvH4_5g15341 FvH4_5g19801 FvH4_5g20110 FvH4_5g20911 FvH4_5g22230 FvH4_5g25751 FvH4_5g26070 FvH4_5g26471 FvH4_5g27072 FvH4_5g27471 FvH4_5g27471 FvH4_5g27998 FvH4_5g28291 FvH4_5g30951 FvH4_5g31082 FvH4_5g31890 FvH4_5g32251 FvH4_5g34112 FvH4_5g37184 FvH4_5g37993 FvH4_5g38271 FvH4_6g00153 FvH4_6g00640 FvH4_6g05921 FvH4_6g08591 FvH4_6g09511 FvH4_6g10331 FvH4_6g10401 FvH4_6g14161 FvH4_6g14171 FvH4_6g18481 FvH4_6g19721 FvH4_6g19980 FvH4_6g20104 FvH4_6g20112 FvH4_6g21261 FvH4_6g21651 FvH4_6g22051 FvH4_6g23141 FvH4_6g24822 FvH4_6g25082 FvH4_6g25391 FvH4_6g25560 FvH4_6g26350 FvH4_6g27031 FvH4_6g27810 FvH4_6g27971 FvH4_6g28331 FvH4_6g29391 FvH4_6g30781 FvH4_6g32221 FvH4_6g34680 FvH4_6g36181 FvH4_6g36551 FvH4_6g37491 FvH4_6g37663 FvH4_6g39590 FvH4_6g40582 FvH4_6g43843 FvH4_6g50551 FvH4_7g00240 FvH4_7g00731 FvH4_7g01031 FvH4_7g03301 FvH4_7g08180 FvH4_7g08180 FvH4_7g10631 FvH4_7g19710 FvH4_7g23892 FvH4_7g25280 FvH4_7g25551 FvH4_7g30121 FvH4_7g31931 FvH4_7g32672 FvH4_c21g00040 FvH4_c2g00053
prunus_persica	Prupe.1G448800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0322451 RchiOBHm_Chr5g0015171
rosa_laevigata	RLG00000003077 RLG00000018186 RLG00000030343
rosa_multiflora	Rmu_co8096726.1_g000001
rosa_roxburghii	Rroxscaffold_157G00438380 Rroxscaffold_1G00001730 Rroxscaffold_3G00236310
rosa_rugosa	Rorug02G0236500
rosa_samantha	Rh4BG247300 Rh6BG286200 Rh6CG287300 Rh7DG257500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	125, 348
AccII	CGCG	4 cut(s)	131, 133, 141, 337
AciI	CCGC	2 cut(s)	129, 155
AcoI	YGGCCR	1 cut(s)	255
AcsI	RAATTY	2 cut(s)	205, 269
AcyI	GRCGYC	1 cut(s)	126
AfaI	GTAC	2 cut(s)	122, 355
AfiI	CCNNNNNNNGG	2 cut(s)	64, 358
AgsI	TTSAA	2 cut(s)	55, 240
AjnI	CCWGG	1 cut(s)	43
AluBI	AGCT	1 cut(s)	168
AluI	AGCT	1 cut(s)	168
Alw26I	GTCTC	1 cut(s)	109
AoxI	GGCC	1 cut(s)	255
ApeKI	GCWGC	1 cut(s)	165
ApoI	RAATTY	2 cut(s)	205, 269
AscI	GGCGCGCC	1 cut(s)	335
AspLEI	GCGC	5 cut(s)	128, 133, 143, 337, 339
AsuC2I	CCSGG	2 cut(s)	191, 286
AsuHPI	GGTGA	2 cut(s)	219, 274
BanI	GGYRCC	2 cut(s)	125, 348
BbvI	GCAGC	1 cut(s)	177
BccI	CCATC	2 cut(s)	193, 284
BceAI	ACGGC	1 cut(s)	139
BciT130I	CCWGG	1 cut(s)	45
BcnI	CCSGG	2 cut(s)	191, 286
BcoDI	GTCTC	1 cut(s)	109
BfaI	CTAG	1 cut(s)	222
BfoI	RGCGCY	1 cut(s)	129
BisI	GCNGC	2 cut(s)	129, 166
BlsI	GCNGC	2 cut(s)	130, 167
Bme1390I	CCNGG	3 cut(s)	45, 191, 286
BmiI	GGNNCC	2 cut(s)	127, 350
BmrFI	CCNGG	3 cut(s)	45, 191, 286
BmsI	GCATC	4 cut(s)	3, 76, 88, 99
BpmI	CTGGAG	3 cut(s)	27, 145, 335
BpuMI	CCSGG	2 cut(s)	191, 286
BsaHI	GRCGYC	1 cut(s)	126
BsaJI	CCNNGG	3 cut(s)	44, 189, 285
Bsc4I	CCNNNNNNNGG	2 cut(s)	64, 358
Bse118I	RCCGGY	1 cut(s)	345
Bse1I	ACTGG	2 cut(s)	210, 270
BseBI	CCWGG	1 cut(s)	45
BseDI	CCNNGG	3 cut(s)	44, 189, 285
BseGI	GGATG	4 cut(s)	91, 114, 185, 295
BseLI	CCNNNNNNNGG	2 cut(s)	64, 358
BseMII	CTCAG	1 cut(s)	104
BseNI	ACTGG	2 cut(s)	210, 270
BsePI	GCGCGC	1 cut(s)	335
BseXI	GCAGC	1 cut(s)	177
BseYI	CCCAGC	2 cut(s)	151, 323
Bsh1236I	CGCG	4 cut(s)	131, 133, 141, 337
BshFI	GGCC	1 cut(s)	257
BshNI	GGYRCC	2 cut(s)	125, 348
BsiSI	CCGG	5 cut(s)	191, 218, 258, 285, 346
BsiWI	CGTACG	1 cut(s)	353
BslI	CCNNNNNNNGG	2 cut(s)	64, 358
BsmAI	GTCTC	1 cut(s)	109
BsmBI	CGTCTC	1 cut(s)	109
BsnI	GGCC	1 cut(s)	257
Bsp143I	GATC	1 cut(s)	224
BspACI	CCGC	2 cut(s)	129, 155
BspANI	GGCC	1 cut(s)	257
BspCNI	CTCAG	1 cut(s)	105
BspFNI	CGCG	4 cut(s)	131, 133, 141, 337
BspLI	GGNNCC	2 cut(s)	127, 350
BspT107I	GGYRCC	2 cut(s)	125, 348
BsrFI	RCCGGY	1 cut(s)	345
BsrI	ACTGG	2 cut(s)	210, 270
BssAI	RCCGGY	1 cut(s)	345
BssECI	CCNNGG	3 cut(s)	44, 189, 285
BssHII	GCGCGC	1 cut(s)	335
BssMI	GATC	1 cut(s)	224
BssNI	GRCGYC	1 cut(s)	126
Bst2UI	CCWGG	1 cut(s)	45
Bst4CI	ACNGT	3 cut(s)	120, 353, 358
BstACI	GRCGYC	1 cut(s)	126
BstC8I	GCNNGC	2 cut(s)	337, 347
BstDEI	CTNAG	1 cut(s)	113
BstF5I	GGATG	4 cut(s)	91, 114, 185, 295
BstFNI	CGCG	4 cut(s)	131, 133, 141, 337
BstH2I	RGCGCY	1 cut(s)	129
BstHHI	GCGC	5 cut(s)	128, 133, 143, 337, 339
BstKTI	GATC	1 cut(s)	227
BstMAI	GTCTC	1 cut(s)	109
BstMBI	GATC	1 cut(s)	224
BstNI	CCWGG	1 cut(s)	45
BstSCI	CCNGG	3 cut(s)	43, 189, 284
BstUI	CGCG	4 cut(s)	131, 133, 141, 337
BstV1I	GCAGC	1 cut(s)	177
BsuRI	GGCC	1 cut(s)	257
BtsCI	GGATG	4 cut(s)	91, 114, 185, 295
Cac8I	GCNNGC	2 cut(s)	337, 347
CfoI	GCGC	5 cut(s)	128, 133, 143, 337, 339
Cfr10I	RCCGGY	1 cut(s)	345
CseI	GACGC	1 cut(s)	147
Csp6I	GTAC	2 cut(s)	121, 354
CviJI	RGCY	4 cut(s)	168, 221, 257, 323
CviKI_1	RGCY	4 cut(s)	168, 221, 257, 323
CviQI	GTAC	2 cut(s)	121, 354
DdeI	CTNAG	1 cut(s)	113
DinI	GGCGCC	1 cut(s)	127
DpnI	GATC	1 cut(s)	226
DpnII	GATC	1 cut(s)	224
EaeI	YGGCCR	1 cut(s)	255
EcoRI	GAATTC	2 cut(s)	205, 269
EcoRII	CCWGG	1 cut(s)	43
EcoT22I	ATGCAT	1 cut(s)	103
EgeI	GGCGCC	1 cut(s)	127
EheI	GGCGCC	1 cut(s)	127
Esp3I	CGTCTC	1 cut(s)	109
FaiI	YATR	2 cut(s)	11, 103
Fnu4HI	GCNGC	2 cut(s)	129, 166
FokI	GGATG	4 cut(s)	98, 121, 172, 302
Fsp4HI	GCNGC	2 cut(s)	129, 166
FspBI	CTAG	1 cut(s)	222
GlaI	GCGC	5 cut(s)	127, 132, 142, 336, 338
GluI	GCNGC	2 cut(s)	129, 166
GsaI	CCCAGC	2 cut(s)	155, 327
GsuI	CTGGAG	3 cut(s)	27, 145, 335
HaeII	RGCGCY	1 cut(s)	129
HaeIII	GGCC	1 cut(s)	257
HapII	CCGG	5 cut(s)	191, 218, 258, 285, 346
HgaI	GACGC	1 cut(s)	147
HhaI	GCGC	5 cut(s)	128, 133, 143, 337, 339
Hin1I	GRCGYC	1 cut(s)	126
Hin6I	GCGC	5 cut(s)	126, 131, 141, 335, 337
HinP1I	GCGC	5 cut(s)	126, 131, 141, 335, 337
HinfI	GANTC	4 cut(s)	69, 158, 279, 317
HpaII	CCGG	5 cut(s)	191, 218, 258, 285, 346
HphI	GGTGA	2 cut(s)	219, 274
Hpy99I	CGWCG	1 cut(s)	278
HpyAV	CCTTC	1 cut(s)	350
HpyCH4III	ACNGT	3 cut(s)	120, 353, 358
HpyCH4V	TGCA	2 cut(s)	16, 101
HpyF3I	CTNAG	1 cut(s)	113
Hsp92I	GRCGYC	1 cut(s)	126
HspAI	GCGC	5 cut(s)	126, 131, 141, 335, 337
KasI	GGCGCC	1 cut(s)	125
KroI	GCCGGC	1 cut(s)	345
KroNI	GCCGGC	1 cut(s)	347
Kzo9I	GATC	1 cut(s)	224
LmnI	GCTCC	1 cut(s)	46
Lsp1109I	GCAGC	1 cut(s)	177
LweI	GCATC	4 cut(s)	3, 76, 88, 99
MaeI	CTAG	1 cut(s)	222
MalI	GATC	1 cut(s)	226
MboI	GATC	1 cut(s)	224
MluCI	AATT	2 cut(s)	205, 269
Mly113I	GGCGCC	1 cut(s)	126
MlyI	GAGTC	3 cut(s)	152, 273, 326
MnlI	CCTC	4 cut(s)	68, 128, 154, 325
Mph1103I	ATGCAT	1 cut(s)	103
MroNI	GCCGGC	1 cut(s)	345
MspA1I	CMGCKG	1 cut(s)	155
MspI	CCGG	5 cut(s)	191, 218, 258, 285, 346
MspR9I	CCNGG	3 cut(s)	45, 191, 286
MteI	GCGCNGCGC	1 cut(s)	129
MvaI	CCWGG	1 cut(s)	45
MvnI	CGCG	4 cut(s)	131, 133, 141, 337
NaeI	GCCGGC	1 cut(s)	347
NarI	GGCGCC	1 cut(s)	126
NciI	CCSGG	2 cut(s)	191, 286
NdeII	GATC	1 cut(s)	224
NgoMIV	GCCGGC	1 cut(s)	345
NlaIV	GGNNCC	2 cut(s)	127, 350
NsiI	ATGCAT	1 cut(s)	103
PalAI	GGCGCGCC	1 cut(s)	335
PauI	GCGCGC	1 cut(s)	335
PcsI	WCGNNNNNNNCGW	1 cut(s)	349
PdiI	GCCGGC	1 cut(s)	347
PfeI	GAWTC	1 cut(s)	69
Pfl23II	CGTACG	1 cut(s)	353
PkrI	GCNGC	2 cut(s)	130, 167
PleI	GAGTC	3 cut(s)	152, 273, 325
PluTI	GGCGCC	1 cut(s)	129
PpsI	GAGTC	3 cut(s)	152, 273, 325
Psp6I	CCWGG	1 cut(s)	43
PspFI	CCCAGC	2 cut(s)	151, 323
PspGI	CCWGG	1 cut(s)	43
PspLI	CGTACG	1 cut(s)	353
PspN4I	GGNNCC	2 cut(s)	127, 350
PteI	GCGCGC	1 cut(s)	335
RsaI	GTAC	2 cut(s)	122, 355
RsaNI	GTAC	2 cut(s)	121, 354
SatI	GCNGC	2 cut(s)	129, 166
Sau3AI	GATC	1 cut(s)	224
SchI	GAGTC	3 cut(s)	152, 273, 326
ScrFI	CCNGG	3 cut(s)	45, 191, 286
SetI	ASST	3 cut(s)	34, 60, 170
SfaNI	GCATC	4 cut(s)	3, 76, 88, 99
SfoI	GGCGCC	1 cut(s)	127
SgsI	GGCGCGCC	1 cut(s)	335
Sse9I	AATT	2 cut(s)	205, 269
SsiI	CCGC	2 cut(s)	129, 155
SspDI	GGCGCC	1 cut(s)	125
SspMI	CTAG	1 cut(s)	222
StyD4I	CCNGG	3 cut(s)	43, 189, 284
TaaI	ACNGT	3 cut(s)	120, 353, 358
TaqI	TCGA	2 cut(s)	21, 273
TasI	AATT	2 cut(s)	205, 269
TauI	GCSGC	1 cut(s)	131
TfiI	GAWTC	1 cut(s)	69
TseI	GCWGC	1 cut(s)	165
TspGWI	ACGGA	1 cut(s)	291
XapI	RAATTY	2 cut(s)	205, 269
XspI	CTAG	1 cut(s)	222
Zsp2I	ATGCAT	1 cut(s)	103

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.