FvH4_1g12132

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000118
Physical Location & Seq
Forward (+)
6630009 .. 6630344
336 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g12132.t1

Sequence Viewer

Length: 336 bp
ATGACGCCTGCACTGCCCGACGCGCCAGGAAGGAACGTTTCACGCACGAACCAACCGCAGCGACAAACTAAGCGCGTGACTCCACCGACAAGGAGACAGGGACCAGGCCCTGAGGGCGCTCGCCTCCCTTTCTTCGACGCCGGAGGAGGCCTGGTCCAAGGCCGGAGGAGTTCTTCGACGCAGGAGGAGGCCTGGTGCACTCGCTGCCGAGGTGGCGCAAGGCAGGGTGGCTGTGCGTGCATGCGGAGCTGCTGGGCGTGCTCGCCGTCGGAAGGTGAGTGCTCGCCGTCGGCCGCCGAGAGCAGAATCGATTGGGTGCCCAGAGCAGAATTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

112

Amino Acids

11.96

Weight (kDa)

9.34

Isoelectric Point (pI)

98.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000118)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01361 FvH4_1g07161 FvH4_1g07431 FvH4_1g07821 FvH4_1g08223 FvH4_1g10041 FvH4_1g12132 FvH4_1g15053 FvH4_1g18161 FvH4_1g18400 FvH4_1g18931 FvH4_1g19242 FvH4_1g19461 FvH4_1g20550 FvH4_1g21381 FvH4_1g21542 FvH4_1g22102 FvH4_1g23991 FvH4_1g24542 FvH4_1g24951 FvH4_1g24960 FvH4_1g25272 FvH4_1g25552 FvH4_1g25771 FvH4_1g28771 FvH4_1g29201 FvH4_1g29611 FvH4_2g01181 FvH4_2g02491 FvH4_2g04621 FvH4_2g04631 FvH4_2g07460 FvH4_2g08540 FvH4_2g08550 FvH4_2g09292 FvH4_2g10501 FvH4_2g12101 FvH4_2g12220 FvH4_2g12551 FvH4_2g14071 FvH4_2g14241 FvH4_2g15041 FvH4_2g15311 FvH4_2g18971 FvH4_2g19220 FvH4_2g19260 FvH4_2g19611 FvH4_2g19652 FvH4_2g20211 FvH4_2g20231 FvH4_2g21541 FvH4_2g22380 FvH4_2g27712 FvH4_2g28171 FvH4_2g29879 FvH4_2g32391 FvH4_3g02171 FvH4_3g05531 FvH4_3g09750 FvH4_3g10310 FvH4_3g10460 FvH4_3g13172 FvH4_3g15232 FvH4_3g18481 FvH4_3g18621 FvH4_3g20504 FvH4_3g20812 FvH4_3g22320 FvH4_3g22930 FvH4_3g22940 FvH4_3g23752 FvH4_3g24791 FvH4_3g26411 FvH4_3g26432 FvH4_3g27201 FvH4_3g27862 FvH4_3g28871 FvH4_3g28954 FvH4_3g29131 FvH4_3g29832 FvH4_3g29922 FvH4_3g30190 FvH4_3g32231 FvH4_3g32250 FvH4_3g33460 FvH4_3g34670 FvH4_3g36982 FvH4_3g37001 FvH4_3g38252 FvH4_3g38772 FvH4_3g40141 FvH4_3g40181 FvH4_3g42521 FvH4_4g00090 FvH4_4g00290 FvH4_4g00301 FvH4_4g00530 FvH4_4g00823 FvH4_4g02300 FvH4_4g02450 FvH4_4g03360 FvH4_4g04481 FvH4_4g04761 FvH4_4g06301 FvH4_4g06630 FvH4_4g08312 FvH4_4g08552 FvH4_4g10053 FvH4_4g11971 FvH4_4g13211 FvH4_4g13511 FvH4_4g15351 FvH4_4g16360 FvH4_4g16601 FvH4_4g18462 FvH4_4g22911 FvH4_4g23221 FvH4_4g24301 FvH4_4g24721 FvH4_4g27905 FvH4_4g28971 FvH4_4g29540 FvH4_4g30720 FvH4_4g31521 FvH4_4g33371 FvH4_4g34111 FvH4_4g35740 FvH4_5g00131 FvH4_5g02530 FvH4_5g02550 FvH4_5g02560 FvH4_5g02580 FvH4_5g03783 FvH4_5g05681 FvH4_5g05681 FvH4_5g09371 FvH4_5g09381 FvH4_5g14611 FvH4_5g15341 FvH4_5g19801 FvH4_5g20110 FvH4_5g20911 FvH4_5g22230 FvH4_5g25751 FvH4_5g26070 FvH4_5g26471 FvH4_5g27072 FvH4_5g27471 FvH4_5g27471 FvH4_5g27998 FvH4_5g28291 FvH4_5g30951 FvH4_5g31082 FvH4_5g31890 FvH4_5g32251 FvH4_5g34112 FvH4_5g37184 FvH4_5g37993 FvH4_5g38271 FvH4_6g00153 FvH4_6g00640 FvH4_6g05921 FvH4_6g08591 FvH4_6g09511 FvH4_6g10331 FvH4_6g10401 FvH4_6g14161 FvH4_6g14171 FvH4_6g18481 FvH4_6g19721 FvH4_6g19980 FvH4_6g20104 FvH4_6g20112 FvH4_6g21261 FvH4_6g21651 FvH4_6g22051 FvH4_6g23141 FvH4_6g24822 FvH4_6g25082 FvH4_6g25391 FvH4_6g25560 FvH4_6g26350 FvH4_6g27031 FvH4_6g27810 FvH4_6g27971 FvH4_6g28331 FvH4_6g29391 FvH4_6g30781 FvH4_6g32221 FvH4_6g34680 FvH4_6g36181 FvH4_6g36551 FvH4_6g37491 FvH4_6g37663 FvH4_6g39590 FvH4_6g40582 FvH4_6g43843 FvH4_6g50551 FvH4_7g00240 FvH4_7g00731 FvH4_7g01031 FvH4_7g03301 FvH4_7g08180 FvH4_7g08180 FvH4_7g10631 FvH4_7g19710 FvH4_7g23892 FvH4_7g25280 FvH4_7g25551 FvH4_7g30121 FvH4_7g31931 FvH4_7g32672 FvH4_c21g00040 FvH4_c2g00053
prunus_persica Prupe.1G448800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322451 RchiOBHm_Chr5g0015171
rosa_laevigata RLG00000003077 RLG00000018186 RLG00000030343
rosa_multiflora Rmu_co8096726.1_g000001
rosa_roxburghii Rroxscaffold_157G00438380 Rroxscaffold_1G00001730 Rroxscaffold_3G00236310
rosa_rugosa Rorug02G0236500
rosa_samantha Rh4BG247300 Rh6BG286200 Rh6CG287300 Rh7DG257500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 316
AccII CGCG 2 cut(s) 23, 75
AciI CCGC 3 cut(s) 56, 244, 294
AclI AACGTT 1 cut(s) 36
AcoI YGGCCR 1 cut(s) 291
AcsI RAATTY 1 cut(s) 329
AcyI GRCGYC 2 cut(s) 5, 138
AfiI CCNNNNNNNGG 1 cut(s) 272
AjnI CCWGG 4 cut(s) 25, 103, 150, 191
AluBI AGCT 1 cut(s) 249
AluI AGCT 1 cut(s) 249
Alw21I GWGCWC 3 cut(s) 200, 263, 284
Alw26I GTCTC 1 cut(s) 88
Alw44I GTGCAC 1 cut(s) 196
AlwNI CAGNNNCTG 1 cut(s) 110
AoxI GGCC 5 cut(s) 106, 148, 160, 189, 291
ApaLI GTGCAC 1 cut(s) 196
ApeKI GCWGC 3 cut(s) 58, 204, 249
ApoI RAATTY 1 cut(s) 329
AspLEI GCGC 4 cut(s) 25, 75, 119, 218
AspS9I GGNCC 3 cut(s) 101, 107, 154
AsuHPI GGTGA 1 cut(s) 287
AvaII GGWCC 2 cut(s) 101, 154
AxyI CCTNAGG 1 cut(s) 111
BaeGI GKGCMC 2 cut(s) 200, 321
BanI GGYRCC 1 cut(s) 316
Bbv12I GWGCWC 3 cut(s) 200, 263, 284
BbvI GCAGC 3 cut(s) 70, 191, 236
BceAI ACGGC 2 cut(s) 250, 271
BciT130I CCWGG 4 cut(s) 27, 105, 152, 193
BcoDI GTCTC 1 cut(s) 88
BfoI RGCGCY 1 cut(s) 120
BglI GCCNNNNNGGC 2 cut(s) 114, 213
BisI GCNGC 4 cut(s) 59, 205, 250, 294
BlsI GCNGC 4 cut(s) 60, 206, 251, 295
Bme1390I CCNGG 4 cut(s) 27, 105, 152, 193
Bme18I GGWCC 2 cut(s) 101, 154
BmgT120I GGNCC 3 cut(s) 101, 107, 154
BmiI GGNNCC 2 cut(s) 102, 318
BmrFI CCNGG 4 cut(s) 27, 105, 152, 193
Bsa29I ATCGAT 1 cut(s) 309
BsaHI GRCGYC 2 cut(s) 5, 138
BsaJI CCNNGG 2 cut(s) 157, 208
BsaXI ACNNNNNCTCC 4 cut(s) 138, 168, 179, 209
Bsc4I CCNNNNNNNGG 1 cut(s) 272
Bse21I CCTNAGG 1 cut(s) 111
BseBI CCWGG 4 cut(s) 27, 105, 152, 193
BseCI ATCGAT 1 cut(s) 309
BseDI CCNNGG 2 cut(s) 157, 208
BseLI CCNNNNNNNGG 1 cut(s) 272
BseMII CTCAG 1 cut(s) 102
BseRI GAGGAG 3 cut(s) 159, 181, 200
BseSI GKGCMC 2 cut(s) 200, 321
BseX3I CGGCCG 1 cut(s) 291
BseXI GCAGC 3 cut(s) 70, 191, 236
BseYI CCCAGC 1 cut(s) 252
Bsh1236I CGCG 2 cut(s) 23, 75
Bsh1285I CGRYCG 1 cut(s) 294
BshFI GGCC 5 cut(s) 108, 150, 162, 191, 293
BshNI GGYRCC 1 cut(s) 316
BshVI ATCGAT 1 cut(s) 309
BsiEI CGRYCG 1 cut(s) 294
BsiHKAI GWGCWC 3 cut(s) 200, 263, 284
BsiSI CCGG 2 cut(s) 141, 163
BslFI GGGAC 1 cut(s) 114
BslI CCNNNNNNNGG 1 cut(s) 272
BsmAI GTCTC 1 cut(s) 88
BsmFI GGGAC 1 cut(s) 114
BsnI GGCC 5 cut(s) 108, 150, 162, 191, 293
Bsp1286I GDGCHC 4 cut(s) 200, 263, 284, 321
BspACI CCGC 3 cut(s) 56, 244, 294
BspANI GGCC 5 cut(s) 108, 150, 162, 191, 293
BspCNI CTCAG 1 cut(s) 103
BspDI ATCGAT 1 cut(s) 309
BspFNI CGCG 2 cut(s) 23, 75
BspLI GGNNCC 2 cut(s) 102, 318
BspT107I GGYRCC 1 cut(s) 316
BssECI CCNNGG 2 cut(s) 157, 208
BssNI GRCGYC 2 cut(s) 5, 138
BssT1I CCWWGG 1 cut(s) 157
Bst2UI CCWGG 4 cut(s) 27, 105, 152, 193
BstACI GRCGYC 2 cut(s) 5, 138
BstAPI GCANNNNNTGC 1 cut(s) 204
BstC8I GCNNGC 7 cut(s) 9, 121, 238, 242, 259, 263, 284
BstDEI CTNAG 2 cut(s) 69, 111
BstFNI CGCG 2 cut(s) 23, 75
BstH2I RGCGCY 1 cut(s) 120
BstHHI GCGC 4 cut(s) 25, 75, 119, 218
BstMAI GTCTC 1 cut(s) 88
BstMCI CGRYCG 1 cut(s) 294
BstMWI GCNNNNNNNGC 8 cut(s) 13, 22, 114, 204, 213, 237, 246, 258
BstNI CCWGG 4 cut(s) 27, 105, 152, 193
BstNSI RCATGY 1 cut(s) 244
BstSCI CCNGG 4 cut(s) 25, 103, 150, 191
BstSLI GKGCMC 2 cut(s) 200, 321
BstUI CGCG 2 cut(s) 23, 75
BstV1I GCAGC 3 cut(s) 70, 191, 236
BstZI CGGCCG 1 cut(s) 291
Bsu15I ATCGAT 1 cut(s) 309
Bsu36I CCTNAGG 1 cut(s) 111
BsuRI GGCC 5 cut(s) 108, 150, 162, 191, 293
BsuTUI ATCGAT 1 cut(s) 309
BtsI GCAGTG 1 cut(s) 11
BtsIMutI CAGTG 1 cut(s) 11
Cac8I GCNNGC 7 cut(s) 9, 121, 238, 242, 259, 263, 284
CaiI CAGNNNCTG 1 cut(s) 110
CfoI GCGC 4 cut(s) 25, 75, 119, 218
Cfr13I GGNCC 3 cut(s) 101, 107, 154
ClaI ATCGAT 1 cut(s) 309
CseI GACGC 4 cut(s) 13, 29, 146, 187
CviAII CATG 1 cut(s) 241
CviJI RGCY 7 cut(s) 108, 150, 162, 191, 231, 249, 293
CviKI_1 RGCY 7 cut(s) 108, 150, 162, 191, 231, 249, 293
DdeI CTNAG 2 cut(s) 69, 111
EaeI YGGCCR 1 cut(s) 291
EagI CGGCCG 1 cut(s) 291
EclXI CGGCCG 1 cut(s) 291
Eco130I CCWWGG 1 cut(s) 157
Eco147I AGGCCT 2 cut(s) 150, 191
Eco47I GGWCC 2 cut(s) 101, 154
Eco52I CGGCCG 1 cut(s) 291
Eco81I CCTNAGG 1 cut(s) 111
EcoO109I RGGNCCY 1 cut(s) 107
EcoRII CCWGG 4 cut(s) 25, 103, 150, 191
EcoT14I CCWWGG 1 cut(s) 157
ErhI CCWWGG 1 cut(s) 157
FaeI CATG 1 cut(s) 244
FaiI YATR 1 cut(s) 242
FaqI GGGAC 1 cut(s) 114
FatI CATG 1 cut(s) 240
Fnu4HI GCNGC 4 cut(s) 59, 205, 250, 294
Fsp4HI GCNGC 4 cut(s) 59, 205, 250, 294
GlaI GCGC 4 cut(s) 24, 74, 118, 217
GluI GCNGC 4 cut(s) 59, 205, 250, 294
GsaI CCCAGC 1 cut(s) 256
HaeII RGCGCY 1 cut(s) 120
HaeIII GGCC 5 cut(s) 108, 150, 162, 191, 293
HapII CCGG 2 cut(s) 141, 163
HgaI GACGC 4 cut(s) 13, 29, 146, 187
HhaI GCGC 4 cut(s) 25, 75, 119, 218
Hin1I GRCGYC 2 cut(s) 5, 138
Hin1II CATG 1 cut(s) 244
Hin6I GCGC 4 cut(s) 23, 73, 117, 216
HinP1I GCGC 4 cut(s) 23, 73, 117, 216
HinfI GANTC 2 cut(s) 79, 306
HpaII CCGG 2 cut(s) 141, 163
HphI GGTGA 1 cut(s) 287
Hpy166II GTNNAC 1 cut(s) 198
Hpy188I TCNGA 1 cut(s) 271
Hpy8I GTNNAC 1 cut(s) 198
Hpy99I CGWCG 5 cut(s) 23, 140, 181, 271, 292
HpyAV CCTTC 2 cut(s) 24, 266
HpyCH4IV ACGT 1 cut(s) 36
HpyCH4V TGCA 3 cut(s) 11, 198, 240
HpyF10VI GCNNNNNNNGC 8 cut(s) 13, 22, 114, 204, 213, 237, 246, 258
HpyF3I CTNAG 2 cut(s) 69, 111
HpySE526I ACGT 1 cut(s) 36
Hsp92I GRCGYC 2 cut(s) 5, 138
Hsp92II CATG 1 cut(s) 244
HspAI GCGC 4 cut(s) 23, 73, 117, 216
LmnI GCTCC 1 cut(s) 246
Lsp1109I GCAGC 3 cut(s) 70, 191, 236
MaeII ACGT 1 cut(s) 36
MaeIII GTNAC 1 cut(s) 76
MboII GAAGA 2 cut(s) 124, 165
MhlI GDGCHC 4 cut(s) 200, 263, 284, 321
MluCI AATT 1 cut(s) 329
MlyI GAGTC 1 cut(s) 73
MmeI TCCRAC 1 cut(s) 249
MnlI CCTC 8 cut(s) 106, 134, 137, 140, 159, 178, 181, 203
MspI CCGG 2 cut(s) 141, 163
MspR9I CCNGG 4 cut(s) 27, 105, 152, 193
MvaI CCWGG 4 cut(s) 27, 105, 152, 193
MvnI CGCG 2 cut(s) 23, 75
MwoI GCNNNNNNNGC 8 cut(s) 13, 22, 114, 204, 213, 237, 246, 258
NlaIII CATG 1 cut(s) 244
NlaIV GGNNCC 2 cut(s) 102, 318
NmeAIII GCCGAG 2 cut(s) 233, 322
NmuCI GTSAC 1 cut(s) 76
NspI RCATGY 1 cut(s) 244
PaeI GCATGC 1 cut(s) 244
PceI AGGCCT 2 cut(s) 150, 191
PfeI GAWTC 1 cut(s) 306
PkrI GCNGC 4 cut(s) 60, 206, 251, 295
PleI GAGTC 1 cut(s) 73
PpsI GAGTC 1 cut(s) 73
Psp1406I AACGTT 1 cut(s) 36
Psp6I CCWGG 4 cut(s) 25, 103, 150, 191
PspFI CCCAGC 1 cut(s) 252
PspGI CCWGG 4 cut(s) 25, 103, 150, 191
PspN4I GGNNCC 2 cut(s) 102, 318
PspPI GGNCC 3 cut(s) 101, 107, 154
PstNI CAGNNNCTG 1 cut(s) 110
SatI GCNGC 4 cut(s) 59, 205, 250, 294
Sau96I GGNCC 3 cut(s) 101, 107, 154
SchI GAGTC 1 cut(s) 73
ScrFI CCNGG 4 cut(s) 27, 105, 152, 193
SduI GDGCHC 4 cut(s) 200, 263, 284, 321
SetI ASST 4 cut(s) 39, 214, 251, 277
SinI GGWCC 2 cut(s) 101, 154
SphI GCATGC 1 cut(s) 244
Sse9I AATT 1 cut(s) 329
SseBI AGGCCT 2 cut(s) 150, 191
SsiI CCGC 3 cut(s) 56, 244, 294
StuI AGGCCT 2 cut(s) 150, 191
StyD4I CCNGG 4 cut(s) 25, 103, 150, 191
StyI CCWWGG 1 cut(s) 157
TaiI ACGT 1 cut(s) 39
TaqI TCGA 3 cut(s) 135, 176, 309
TasI AATT 1 cut(s) 329
TauI GCSGC 1 cut(s) 296
TfiI GAWTC 1 cut(s) 306
TscAI CASTG 1 cut(s) 18
TseFI GTSAC 1 cut(s) 76
TseI GCWGC 3 cut(s) 58, 204, 249
Tsp45I GTSAC 1 cut(s) 76
TspRI CASTG 1 cut(s) 18
VneI GTGCAC 1 cut(s) 196
VpaK11BI GGWCC 2 cut(s) 101, 154
XapI RAATTY 1 cut(s) 329
XceI RCATGY 1 cut(s) 244
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.