FvH4_3g15232

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000118
Physical Location & Seq
Forward (+)
9475941 .. 9477197
1257 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g15232.t1

Sequence Viewer

Length: 564 bp
ATGTTTGGAGGCCCAGACATGCTTGGGCCGGAAAATTTAACTTCTGTACAACATGGATTACAAATCCAGTTAAGAAGGTGTTATAAAATTTATCCAGCTTCGTTCGACAAAAGCCGAAACTACCATAGCTTCTCTTCCTCTGCGAATCTACGACCATCTCATCATCGTACCTGCTCCATTAAATTTCCAGTGATCGTTTTCGACGGCCTCCGACTGTCTTCCACCGTCGCTGATCTCGTGGAATTGTTTTTCGGGGTTTGGTGCGCTCCTACTGCAAATGATGGTGTAACTAATGATGTACTTTCTGTGCGGACGTCCGTCCGTTCTCCACCCTTCGGCGCCGGCGACGGCGCGCCTCCACCCCAGAAGACTCCAGCAGCATCCCTAACCACTTTCCCTCCTCGCCGGAAAACTGGAAAAGAATTGAAGCTGTTAAAGTTAAACATTTATACGACAAACCGAATCAAAGCATTGAAGATTCTAATGTCTGATTATGTTGAGCTTTTCCACGCTCTTGATAAAGAGGAAGAAAAGATGGAGTTCATTACTCAGCTTATTTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

188

Amino Acids

20.86

Weight (kDa)

9.32

Isoelectric Point (pI)

49.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000118)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01361 FvH4_1g07161 FvH4_1g07431 FvH4_1g07821 FvH4_1g08223 FvH4_1g10041 FvH4_1g12132 FvH4_1g15053 FvH4_1g18161 FvH4_1g18400 FvH4_1g18931 FvH4_1g19242 FvH4_1g19461 FvH4_1g20550 FvH4_1g21381 FvH4_1g21542 FvH4_1g22102 FvH4_1g23991 FvH4_1g24542 FvH4_1g24951 FvH4_1g24960 FvH4_1g25272 FvH4_1g25552 FvH4_1g25771 FvH4_1g28771 FvH4_1g29201 FvH4_1g29611 FvH4_2g01181 FvH4_2g02491 FvH4_2g04621 FvH4_2g04631 FvH4_2g07460 FvH4_2g08540 FvH4_2g08550 FvH4_2g09292 FvH4_2g10501 FvH4_2g12101 FvH4_2g12220 FvH4_2g12551 FvH4_2g14071 FvH4_2g14241 FvH4_2g15041 FvH4_2g15311 FvH4_2g18971 FvH4_2g19220 FvH4_2g19260 FvH4_2g19611 FvH4_2g19652 FvH4_2g20211 FvH4_2g20231 FvH4_2g21541 FvH4_2g22380 FvH4_2g27712 FvH4_2g28171 FvH4_2g29879 FvH4_2g32391 FvH4_3g02171 FvH4_3g05531 FvH4_3g09750 FvH4_3g10310 FvH4_3g10460 FvH4_3g13172 FvH4_3g15232 FvH4_3g18481 FvH4_3g18621 FvH4_3g20504 FvH4_3g20812 FvH4_3g22320 FvH4_3g22930 FvH4_3g22940 FvH4_3g23752 FvH4_3g24791 FvH4_3g26411 FvH4_3g26432 FvH4_3g27201 FvH4_3g27862 FvH4_3g28871 FvH4_3g28954 FvH4_3g29131 FvH4_3g29832 FvH4_3g29922 FvH4_3g30190 FvH4_3g32231 FvH4_3g32250 FvH4_3g33460 FvH4_3g34670 FvH4_3g36982 FvH4_3g37001 FvH4_3g38252 FvH4_3g38772 FvH4_3g40141 FvH4_3g40181 FvH4_3g42521 FvH4_4g00090 FvH4_4g00290 FvH4_4g00301 FvH4_4g00530 FvH4_4g00823 FvH4_4g02300 FvH4_4g02450 FvH4_4g03360 FvH4_4g04481 FvH4_4g04761 FvH4_4g06301 FvH4_4g06630 FvH4_4g08312 FvH4_4g08552 FvH4_4g10053 FvH4_4g11971 FvH4_4g13211 FvH4_4g13511 FvH4_4g15351 FvH4_4g16360 FvH4_4g16601 FvH4_4g18462 FvH4_4g22911 FvH4_4g23221 FvH4_4g24301 FvH4_4g24721 FvH4_4g27905 FvH4_4g28971 FvH4_4g29540 FvH4_4g30720 FvH4_4g31521 FvH4_4g33371 FvH4_4g34111 FvH4_4g35740 FvH4_5g00131 FvH4_5g02530 FvH4_5g02550 FvH4_5g02560 FvH4_5g02580 FvH4_5g03783 FvH4_5g05681 FvH4_5g05681 FvH4_5g09371 FvH4_5g09381 FvH4_5g14611 FvH4_5g15341 FvH4_5g19801 FvH4_5g20110 FvH4_5g20911 FvH4_5g22230 FvH4_5g25751 FvH4_5g26070 FvH4_5g26471 FvH4_5g27072 FvH4_5g27471 FvH4_5g27471 FvH4_5g27998 FvH4_5g28291 FvH4_5g30951 FvH4_5g31082 FvH4_5g31890 FvH4_5g32251 FvH4_5g34112 FvH4_5g37184 FvH4_5g37993 FvH4_5g38271 FvH4_6g00153 FvH4_6g00640 FvH4_6g05921 FvH4_6g08591 FvH4_6g09511 FvH4_6g10331 FvH4_6g10401 FvH4_6g14161 FvH4_6g14171 FvH4_6g18481 FvH4_6g19721 FvH4_6g19980 FvH4_6g20104 FvH4_6g20112 FvH4_6g21261 FvH4_6g21651 FvH4_6g22051 FvH4_6g23141 FvH4_6g24822 FvH4_6g25082 FvH4_6g25391 FvH4_6g25560 FvH4_6g26350 FvH4_6g27031 FvH4_6g27810 FvH4_6g27971 FvH4_6g28331 FvH4_6g29391 FvH4_6g30781 FvH4_6g32221 FvH4_6g34680 FvH4_6g36181 FvH4_6g36551 FvH4_6g37491 FvH4_6g37663 FvH4_6g39590 FvH4_6g40582 FvH4_6g43843 FvH4_6g50551 FvH4_7g00240 FvH4_7g00731 FvH4_7g01031 FvH4_7g03301 FvH4_7g08180 FvH4_7g08180 FvH4_7g10631 FvH4_7g19710 FvH4_7g23892 FvH4_7g25280 FvH4_7g25551 FvH4_7g30121 FvH4_7g31931 FvH4_7g32672 FvH4_c21g00040 FvH4_c2g00053
prunus_persica Prupe.1G448800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322451 RchiOBHm_Chr5g0015171
rosa_laevigata RLG00000003077 RLG00000018186 RLG00000030343
rosa_multiflora Rmu_co8096726.1_g000001
rosa_roxburghii Rroxscaffold_157G00438380 Rroxscaffold_1G00001730 Rroxscaffold_3G00236310
rosa_rugosa Rorug02G0236500
rosa_samantha Rh4BG247300 Rh6BG286200 Rh6CG287300 Rh7DG257500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 84
AatII GACGTC 1 cut(s) 317
Acc36I ACCTGC 1 cut(s) 179
AccB1I GGYRCC 1 cut(s) 338
AccII CGCG 1 cut(s) 353
AciI CCGC 1 cut(s) 310
AcsI RAATTY 3 cut(s) 34, 87, 182
AcyI GRCGYC 2 cut(s) 314, 339
AfaI GTAC 3 cut(s) 48, 169, 300
AfiI CCNNNNNNNGG 1 cut(s) 335
AgsI TTSAA 2 cut(s) 427, 475
AluBI AGCT 5 cut(s) 98, 129, 430, 502, 553
AluI AGCT 5 cut(s) 98, 129, 430, 502, 553
AoxI GGCC 3 cut(s) 10, 26, 205
ApeKI GCWGC 1 cut(s) 377
ApoI RAATTY 3 cut(s) 34, 87, 182
AscI GGCGCGCC 1 cut(s) 351
AspLEI GCGC 4 cut(s) 266, 341, 353, 355
AspS9I GGNCC 2 cut(s) 11, 26
BanI GGYRCC 1 cut(s) 338
BauI CACGAG 1 cut(s) 236
BbsI GAAGAC 2 cut(s) 210, 374
BbvI GCAGC 1 cut(s) 389
BccI CCATC 3 cut(s) 163, 275, 529
BceAI ACGGC 2 cut(s) 220, 364
BfoI RGCGCY 1 cut(s) 342
BfuAI ACCTGC 1 cut(s) 179
BisI GCNGC 1 cut(s) 378
BlsI GCNGC 1 cut(s) 379
BmgT120I GGNCC 2 cut(s) 11, 26
BmiI GGNNCC 1 cut(s) 340
BmsI GCATC 1 cut(s) 389
BoxI GACNNNNGTC 1 cut(s) 317
BpiI GAAGAC 2 cut(s) 210, 374
BpmI CTGGAG 1 cut(s) 357
BsaHI GRCGYC 2 cut(s) 314, 339
BsaXI ACNNNNNCTCC 2 cut(s) 382, 412
Bsc4I CCNNNNNNNGG 1 cut(s) 335
Bse118I RCCGGY 1 cut(s) 341
Bse1I ACTGG 3 cut(s) 67, 188, 418
BseGI GGATG 1 cut(s) 380
BseLI CCNNNNNNNGG 1 cut(s) 335
BseMII CTCAG 1 cut(s) 563
BseNI ACTGG 3 cut(s) 67, 188, 418
BsePI GCGCGC 1 cut(s) 351
BseRI GAGGAG 1 cut(s) 390
BseXI GCAGC 1 cut(s) 389
Bsh1236I CGCG 1 cut(s) 353
BshFI GGCC 3 cut(s) 12, 28, 207
BshNI GGYRCC 1 cut(s) 338
BsiSI CCGG 3 cut(s) 29, 342, 406
BslI CCNNNNNNNGG 1 cut(s) 335
BsnI GGCC 3 cut(s) 12, 28, 207
Bsp1407I TGTACA 1 cut(s) 46
Bsp143I GATC 2 cut(s) 192, 232
BspACI CCGC 1 cut(s) 310
BspANI GGCC 3 cut(s) 12, 28, 207
BspCNI CTCAG 1 cut(s) 562
BspFNI CGCG 1 cut(s) 353
BspLI GGNNCC 1 cut(s) 340
BspMI ACCTGC 1 cut(s) 179
BspT107I GGYRCC 1 cut(s) 338
BsrFI RCCGGY 1 cut(s) 341
BsrGI TGTACA 1 cut(s) 46
BsrI ACTGG 3 cut(s) 67, 188, 418
BssAI RCCGGY 1 cut(s) 341
BssHII GCGCGC 1 cut(s) 351
BssMI GATC 2 cut(s) 192, 232
BssNI GRCGYC 2 cut(s) 314, 339
BssSI CACGAG 1 cut(s) 236
Bst2BI CACGAG 1 cut(s) 236
Bst4CI ACNGT 2 cut(s) 216, 226
Bst6I CTCTTC 1 cut(s) 139
BstACI GRCGYC 2 cut(s) 314, 339
BstAUI TGTACA 1 cut(s) 46
BstC8I GCNNGC 2 cut(s) 343, 353
BstDEI CTNAG 2 cut(s) 549, 561
BstF5I GGATG 1 cut(s) 380
BstFNI CGCG 1 cut(s) 353
BstH2I RGCGCY 1 cut(s) 342
BstHHI GCGC 4 cut(s) 266, 341, 353, 355
BstKTI GATC 2 cut(s) 195, 235
BstMBI GATC 2 cut(s) 192, 232
BstMWI GCNNNNNNNGC 1 cut(s) 272
BstNSI RCATGY 1 cut(s) 22
BstPAI GACNNNNGTC 1 cut(s) 317
BstUI CGCG 1 cut(s) 353
BstV1I GCAGC 1 cut(s) 389
BstV2I GAAGAC 2 cut(s) 210, 374
BsuRI GGCC 3 cut(s) 12, 28, 207
BtsCI GGATG 1 cut(s) 380
BtsIMutI CAGTG 1 cut(s) 195
BveI ACCTGC 1 cut(s) 179
Cac8I GCNNGC 2 cut(s) 343, 353
CfoI GCGC 4 cut(s) 266, 341, 353, 355
Cfr10I RCCGGY 1 cut(s) 341
Cfr13I GGNCC 2 cut(s) 11, 26
Csp6I GTAC 3 cut(s) 47, 168, 299
CviAII CATG 2 cut(s) 19, 53
CviJI RGCY 9 cut(s) 12, 28, 98, 114, 129, 207, 430, 502, 553
CviKI_1 RGCY 9 cut(s) 12, 28, 98, 114, 129, 207, 430, 502, 553
CviQI GTAC 3 cut(s) 47, 168, 299
DdeI CTNAG 2 cut(s) 549, 561
DinI GGCGCC 1 cut(s) 340
DpnI GATC 2 cut(s) 194, 234
DpnII GATC 2 cut(s) 192, 232
Eam1104I CTCTTC 1 cut(s) 139
EarI CTCTTC 1 cut(s) 139
EgeI GGCGCC 1 cut(s) 340
EheI GGCGCC 1 cut(s) 340
FaeI CATG 2 cut(s) 22, 56
FaiI YATR 6 cut(s) 20, 54, 84, 126, 450, 495
FatI CATG 2 cut(s) 18, 52
Fnu4HI GCNGC 1 cut(s) 378
FokI GGATG 1 cut(s) 367
Fsp4HI GCNGC 1 cut(s) 378
GlaI GCGC 4 cut(s) 265, 340, 352, 354
GluI GCNGC 1 cut(s) 378
GsuI CTGGAG 1 cut(s) 357
HaeII RGCGCY 1 cut(s) 342
HaeIII GGCC 3 cut(s) 12, 28, 207
HapII CCGG 3 cut(s) 29, 342, 406
HhaI GCGC 4 cut(s) 266, 341, 353, 355
Hin1I GRCGYC 2 cut(s) 314, 339
Hin1II CATG 2 cut(s) 22, 56
Hin6I GCGC 4 cut(s) 264, 339, 351, 353
HinP1I GCGC 4 cut(s) 264, 339, 351, 353
HinfI GANTC 4 cut(s) 145, 370, 462, 478
HpaII CCGG 3 cut(s) 29, 342, 406
Hpy188I TCNGA 2 cut(s) 212, 490
Hpy188III TCNNGA 1 cut(s) 515
Hpy99I CGWCG 3 cut(s) 206, 230, 350
HpyAV CCTTC 2 cut(s) 69, 343
HpyCH4III ACNGT 2 cut(s) 216, 226
HpyCH4IV ACGT 1 cut(s) 314
HpyCH4V TGCA 1 cut(s) 275
HpyF10VI GCNNNNNNNGC 1 cut(s) 272
HpyF3I CTNAG 2 cut(s) 549, 561
HpySE526I ACGT 1 cut(s) 314
Hsp92I GRCGYC 2 cut(s) 314, 339
Hsp92II CATG 2 cut(s) 22, 56
HspAI GCGC 4 cut(s) 264, 339, 351, 353
KasI GGCGCC 1 cut(s) 338
KroI GCCGGC 1 cut(s) 341
KroNI GCCGGC 1 cut(s) 343
Kzo9I GATC 2 cut(s) 192, 232
LmnI GCTCC 2 cut(s) 179, 271
Lsp1109I GCAGC 1 cut(s) 389
LweI GCATC 1 cut(s) 389
MaeII ACGT 1 cut(s) 314
MaeIII GTNAC 1 cut(s) 286
MalI GATC 2 cut(s) 194, 234
MboI GATC 2 cut(s) 192, 232
MboII GAAGA 5 cut(s) 126, 210, 379, 487, 539
MluCI AATT 5 cut(s) 34, 87, 182, 242, 422
Mly113I GGCGCC 1 cut(s) 339
MlyI GAGTC 1 cut(s) 364
MmeI TCCRAC 1 cut(s) 235
MnlI CCTC 6 cut(s) 148, 218, 366, 408, 411, 517
MreI CGCCGGCG 1 cut(s) 341
MroNI GCCGGC 1 cut(s) 341
MseI TTAA 5 cut(s) 38, 71, 180, 434, 440
MspI CCGG 3 cut(s) 29, 342, 406
MvnI CGCG 1 cut(s) 353
MwoI GCNNNNNNNGC 1 cut(s) 272
NaeI GCCGGC 1 cut(s) 343
NarI GGCGCC 1 cut(s) 339
NdeII GATC 2 cut(s) 192, 232
NgoMIV GCCGGC 1 cut(s) 341
NlaIII CATG 2 cut(s) 22, 56
NlaIV GGNNCC 1 cut(s) 340
NspI RCATGY 1 cut(s) 22
PalAI GGCGCGCC 1 cut(s) 351
PauI GCGCGC 1 cut(s) 351
PcsI WCGNNNNNNNCGW 2 cut(s) 234, 342
PdiI GCCGGC 1 cut(s) 343
PfeI GAWTC 3 cut(s) 145, 462, 478
PkrI GCNGC 1 cut(s) 379
PleI GAGTC 1 cut(s) 364
PluTI GGCGCC 1 cut(s) 342
PpsI GAGTC 1 cut(s) 364
PshAI GACNNNNGTC 1 cut(s) 317
PsiI TTATAA 1 cut(s) 84
PspN4I GGNNCC 1 cut(s) 340
PspPI GGNCC 2 cut(s) 11, 26
PteI GCGCGC 1 cut(s) 351
RsaI GTAC 3 cut(s) 48, 169, 300
RsaNI GTAC 3 cut(s) 47, 168, 299
SaqAI TTAA 5 cut(s) 38, 71, 180, 434, 440
SatI GCNGC 1 cut(s) 378
Sau3AI GATC 2 cut(s) 192, 232
Sau96I GGNCC 2 cut(s) 11, 26
SchI GAGTC 1 cut(s) 364
SetI ASST 8 cut(s) 80, 100, 131, 173, 317, 432, 504, 555
SfaNI GCATC 1 cut(s) 389
SfoI GGCGCC 1 cut(s) 340
SgrAI CRCCGGYG 1 cut(s) 341
SgsI GGCGCGCC 1 cut(s) 351
Sse9I AATT 5 cut(s) 34, 87, 182, 242, 422
SsiI CCGC 1 cut(s) 310
SspDI GGCGCC 1 cut(s) 338
TaaI ACNGT 2 cut(s) 216, 226
TaiI ACGT 1 cut(s) 317
TaqI TCGA 2 cut(s) 105, 201
TasI AATT 5 cut(s) 34, 87, 182, 242, 422
TatI WGTACW 2 cut(s) 46, 298
TfiI GAWTC 3 cut(s) 145, 462, 478
Tru1I TTAA 5 cut(s) 38, 71, 180, 434, 440
Tru9I TTAA 5 cut(s) 38, 71, 180, 434, 440
TscAI CASTG 1 cut(s) 195
TseI GCWGC 1 cut(s) 377
TspDTI ATGAA 1 cut(s) 532
TspGWI ACGGA 2 cut(s) 307, 311
TspRI CASTG 1 cut(s) 195
XapI RAATTY 3 cut(s) 34, 87, 182
XceI RCATGY 1 cut(s) 22
ZraI GACGTC 1 cut(s) 315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.