FvH4_4g29540

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000118
Physical Location & Seq
Reverse (-)
29633095 .. 29638320
5226 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g29540.t1

Sequence Viewer

Length: 681 bp
ATGACAGCACAGGCTTCTAGGACGGTTTCTCTTATTCCAGGACTGAAGCGCTGGACGGAAAACACCATGATTGATCAAGGTTGGCCGGAAAACTTGTCGCCGGCCAGTCCTGGAAGGAGAGAAGCCGTCCTGGAAGTCTGTGCTGTCGTCCGGGAAGGAGAGAAGTCGTCGCTGGCGCGTTCAGCTCATGTTGATGATGTTCATCAACGTGGTGAGATAGATGAGTTGAAGCGGTCCAATGAGAATTTGCACAGAATGATGGAAGAGATTTTGAGGCGGCTCCCCACTCAAGATGGTGAGAGTAATTTTGGTGACGGCTTTCATAACCCATTCTCAGAAGAACAAGAACATGGAAGCTCCAACAACTCAAGTTCTATTGGCAAGGCTGCTTCGGAGTCGTGGGAGTGGTGGTGGGTTGGTTTGGCGTCAAAGGTGATGGCGGGTTGTGGTTTTGTTGGTCTGACGGCGAATTGGAGTGCTCCAACCGCGAATACACGAGTTGGCTCGGATCGGGTTGCCGATCTATGTTGGCACGATGGCTGTGTGTTTGTGACCTTGGTGTCTTTGATCTGTGAAGGGTCTAATGAAAACGTGATGGCGGTGTCTCGGCTAAAGAGGAGCGAGAGTGCAATGGTTGGTTTTCCGGCGACGGTGGCGGCAAGGTTGGTCTGGGTTGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

227

Amino Acids

24.77

Weight (kDa)

5.42

Isoelectric Point (pI)

49.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000118)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01361 FvH4_1g07161 FvH4_1g07431 FvH4_1g07821 FvH4_1g08223 FvH4_1g10041 FvH4_1g12132 FvH4_1g15053 FvH4_1g18161 FvH4_1g18400 FvH4_1g18931 FvH4_1g19242 FvH4_1g19461 FvH4_1g20550 FvH4_1g21381 FvH4_1g21542 FvH4_1g22102 FvH4_1g23991 FvH4_1g24542 FvH4_1g24951 FvH4_1g24960 FvH4_1g25272 FvH4_1g25552 FvH4_1g25771 FvH4_1g28771 FvH4_1g29201 FvH4_1g29611 FvH4_2g01181 FvH4_2g02491 FvH4_2g04621 FvH4_2g04631 FvH4_2g07460 FvH4_2g08540 FvH4_2g08550 FvH4_2g09292 FvH4_2g10501 FvH4_2g12101 FvH4_2g12220 FvH4_2g12551 FvH4_2g14071 FvH4_2g14241 FvH4_2g15041 FvH4_2g15311 FvH4_2g18971 FvH4_2g19220 FvH4_2g19260 FvH4_2g19611 FvH4_2g19652 FvH4_2g20211 FvH4_2g20231 FvH4_2g21541 FvH4_2g22380 FvH4_2g27712 FvH4_2g28171 FvH4_2g29879 FvH4_2g32391 FvH4_3g02171 FvH4_3g05531 FvH4_3g09750 FvH4_3g10310 FvH4_3g10460 FvH4_3g13172 FvH4_3g15232 FvH4_3g18481 FvH4_3g18621 FvH4_3g20504 FvH4_3g20812 FvH4_3g22320 FvH4_3g22930 FvH4_3g22940 FvH4_3g23752 FvH4_3g24791 FvH4_3g26411 FvH4_3g26432 FvH4_3g27201 FvH4_3g27862 FvH4_3g28871 FvH4_3g28954 FvH4_3g29131 FvH4_3g29832 FvH4_3g29922 FvH4_3g30190 FvH4_3g32231 FvH4_3g32250 FvH4_3g33460 FvH4_3g34670 FvH4_3g36982 FvH4_3g37001 FvH4_3g38252 FvH4_3g38772 FvH4_3g40141 FvH4_3g40181 FvH4_3g42521 FvH4_4g00090 FvH4_4g00290 FvH4_4g00301 FvH4_4g00530 FvH4_4g00823 FvH4_4g02300 FvH4_4g02450 FvH4_4g03360 FvH4_4g04481 FvH4_4g04761 FvH4_4g06301 FvH4_4g06630 FvH4_4g08312 FvH4_4g08552 FvH4_4g10053 FvH4_4g11971 FvH4_4g13211 FvH4_4g13511 FvH4_4g15351 FvH4_4g16360 FvH4_4g16601 FvH4_4g18462 FvH4_4g22911 FvH4_4g23221 FvH4_4g24301 FvH4_4g24721 FvH4_4g27905 FvH4_4g28971 FvH4_4g29540 FvH4_4g30720 FvH4_4g31521 FvH4_4g33371 FvH4_4g34111 FvH4_4g35740 FvH4_5g00131 FvH4_5g02530 FvH4_5g02550 FvH4_5g02560 FvH4_5g02580 FvH4_5g03783 FvH4_5g05681 FvH4_5g05681 FvH4_5g09371 FvH4_5g09381 FvH4_5g14611 FvH4_5g15341 FvH4_5g19801 FvH4_5g20110 FvH4_5g20911 FvH4_5g22230 FvH4_5g25751 FvH4_5g26070 FvH4_5g26471 FvH4_5g27072 FvH4_5g27471 FvH4_5g27471 FvH4_5g27998 FvH4_5g28291 FvH4_5g30951 FvH4_5g31082 FvH4_5g31890 FvH4_5g32251 FvH4_5g34112 FvH4_5g37184 FvH4_5g37993 FvH4_5g38271 FvH4_6g00153 FvH4_6g00640 FvH4_6g05921 FvH4_6g08591 FvH4_6g09511 FvH4_6g10331 FvH4_6g10401 FvH4_6g14161 FvH4_6g14171 FvH4_6g18481 FvH4_6g19721 FvH4_6g19980 FvH4_6g20104 FvH4_6g20112 FvH4_6g21261 FvH4_6g21651 FvH4_6g22051 FvH4_6g23141 FvH4_6g24822 FvH4_6g25082 FvH4_6g25391 FvH4_6g25560 FvH4_6g26350 FvH4_6g27031 FvH4_6g27810 FvH4_6g27971 FvH4_6g28331 FvH4_6g29391 FvH4_6g30781 FvH4_6g32221 FvH4_6g34680 FvH4_6g36181 FvH4_6g36551 FvH4_6g37491 FvH4_6g37663 FvH4_6g39590 FvH4_6g40582 FvH4_6g43843 FvH4_6g50551 FvH4_7g00240 FvH4_7g00731 FvH4_7g01031 FvH4_7g03301 FvH4_7g08180 FvH4_7g08180 FvH4_7g10631 FvH4_7g19710 FvH4_7g23892 FvH4_7g25280 FvH4_7g25551 FvH4_7g30121 FvH4_7g31931 FvH4_7g32672 FvH4_c21g00040 FvH4_c2g00053
prunus_persica Prupe.1G448800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322451 RchiOBHm_Chr5g0015171
rosa_laevigata RLG00000003077 RLG00000018186 RLG00000030343
rosa_multiflora Rmu_co8096726.1_g000001
rosa_roxburghii Rroxscaffold_157G00438380 Rroxscaffold_1G00001730 Rroxscaffold_3G00236310
rosa_rugosa Rorug02G0236500
rosa_samantha Rh4BG247300 Rh6BG286200 Rh6CG287300 Rh7DG257500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 559
AccII CGCG 2 cut(s) 178, 488
AciI CCGC 6 cut(s) 232, 277, 440, 486, 599, 656
AclWI GGATC 1 cut(s) 516
AcoI YGGCCR 2 cut(s) 83, 102
AcsI RAATTY 1 cut(s) 244
AcuI CTGAAG 1 cut(s) 65
AcyI GRCGYC 1 cut(s) 425
AfeI AGCGCT 1 cut(s) 50
AgsI TTSAA 1 cut(s) 229
AjnI CCWGG 3 cut(s) 37, 109, 129
AluBI AGCT 2 cut(s) 185, 357
AluI AGCT 2 cut(s) 185, 357
Alw21I GWGCWC 1 cut(s) 481
Alw26I GTCTC 1 cut(s) 609
AlwI GGATC 1 cut(s) 516
Aor51HI AGCGCT 1 cut(s) 50
AoxI GGCC 2 cut(s) 83, 102
ApeKI GCWGC 1 cut(s) 386
ApoI RAATTY 1 cut(s) 244
AspLEI GCGC 2 cut(s) 51, 178
AspS9I GGNCC 1 cut(s) 234
AsuC2I CCSGG 1 cut(s) 152
AsuHPI GGTGA 4 cut(s) 224, 308, 323, 445
AvaII GGWCC 1 cut(s) 234
BauI CACGAG 1 cut(s) 495
Bbv12I GWGCWC 1 cut(s) 481
BbvI GCAGC 1 cut(s) 373
BccI CCATC 5 cut(s) 253, 287, 430, 530, 589
BceAI ACGGC 3 cut(s) 110, 331, 480
BciT130I CCWGG 3 cut(s) 39, 111, 131
BclI TGATCA 1 cut(s) 73
BcnI CCSGG 1 cut(s) 152
BcoDI GTCTC 1 cut(s) 609
BfaI CTAG 1 cut(s) 18
BfoI RGCGCY 1 cut(s) 52
BisI GCNGC 3 cut(s) 278, 387, 657
BlsI GCNGC 3 cut(s) 279, 388, 658
Bme1390I CCNGG 4 cut(s) 39, 111, 131, 152
Bme18I GGWCC 1 cut(s) 234
BmgT120I GGNCC 1 cut(s) 234
BmiI GGNNCC 1 cut(s) 281
BmrFI CCNGG 4 cut(s) 39, 111, 131, 152
BpuEI CTTGAG 2 cut(s) 273, 352
BpuMI CCSGG 1 cut(s) 152
BsaBI GATNNNNATC 1 cut(s) 201
BsaHI GRCGYC 1 cut(s) 425
BsaJI CCNNGG 1 cut(s) 555
BsaXI ACNNNNNCTCC 4 cut(s) 395, 425, 610, 640
Bse118I RCCGGY 1 cut(s) 100
Bse1I ACTGG 1 cut(s) 105
Bse3DI GCAATG 1 cut(s) 636
Bse8I GATNNNNATC 1 cut(s) 201
BseBI CCWGG 3 cut(s) 39, 111, 131
BseDI CCNNGG 1 cut(s) 555
BseJI GATNNNNATC 1 cut(s) 201
BseMI GCAATG 1 cut(s) 636
BseMII CTCAG 1 cut(s) 348
BseNI ACTGG 1 cut(s) 105
BseRI GAGGAG 1 cut(s) 631
BseXI GCAGC 1 cut(s) 373
Bsh1236I CGCG 2 cut(s) 178, 488
BshFI GGCC 2 cut(s) 85, 104
BsiHKAI GWGCWC 1 cut(s) 481
BsiSI CCGG 4 cut(s) 86, 101, 151, 644
BsmAI GTCTC 1 cut(s) 609
BsnI GGCC 2 cut(s) 85, 104
Bsp1286I GDGCHC 1 cut(s) 481
Bsp143I GATC 4 cut(s) 73, 508, 520, 567
BspACI CCGC 6 cut(s) 232, 277, 440, 486, 599, 656
BspANI GGCC 2 cut(s) 85, 104
BspCNI CTCAG 1 cut(s) 347
BspFNI CGCG 2 cut(s) 178, 488
BspLI GGNNCC 1 cut(s) 281
BspPI GGATC 1 cut(s) 516
BsrDI GCAATG 1 cut(s) 636
BsrFI RCCGGY 1 cut(s) 100
BsrI ACTGG 1 cut(s) 105
BssAI RCCGGY 1 cut(s) 100
BssECI CCNNGG 1 cut(s) 555
BssMI GATC 4 cut(s) 73, 508, 520, 567
BssNI GRCGYC 1 cut(s) 425
BssSI CACGAG 1 cut(s) 495
BssT1I CCWWGG 1 cut(s) 555
Bst2BI CACGAG 1 cut(s) 495
Bst2UI CCWGG 3 cut(s) 39, 111, 131
Bst4CI ACNGT 2 cut(s) 25, 652
Bst6I CTCTTC 1 cut(s) 258
BstACI GRCGYC 1 cut(s) 425
BstC8I GCNNGC 2 cut(s) 102, 174
BstDEI CTNAG 1 cut(s) 334
BstFNI CGCG 2 cut(s) 178, 488
BstH2I RGCGCY 1 cut(s) 52
BstHHI GCGC 2 cut(s) 51, 178
BstKTI GATC 4 cut(s) 76, 511, 523, 570
BstMAI GTCTC 1 cut(s) 609
BstMBI GATC 4 cut(s) 73, 508, 520, 567
BstMWI GCNNNNNNNGC 3 cut(s) 182, 485, 653
BstNI CCWGG 3 cut(s) 39, 111, 131
BstSCI CCNGG 4 cut(s) 37, 109, 129, 150
BstUI CGCG 2 cut(s) 178, 488
BstV1I GCAGC 1 cut(s) 373
BsuRI GGCC 2 cut(s) 85, 104
Cac8I GCNNGC 2 cut(s) 102, 174
CfoI GCGC 2 cut(s) 51, 178
Cfr10I RCCGGY 1 cut(s) 100
Cfr13I GGNCC 1 cut(s) 234
CseI GACGC 1 cut(s) 414
CviAII CATG 3 cut(s) 67, 188, 350
DdeI CTNAG 1 cut(s) 334
DpnI GATC 4 cut(s) 75, 510, 522, 569
DpnII GATC 4 cut(s) 73, 508, 520, 567
DrdI GACNNNNNNGTC 1 cut(s) 559
DseDI GACNNNNNNGTC 1 cut(s) 559
EaeI YGGCCR 2 cut(s) 83, 102
Eam1104I CTCTTC 1 cut(s) 258
EarI CTCTTC 1 cut(s) 258
Eco130I CCWWGG 1 cut(s) 555
Eco47I GGWCC 1 cut(s) 234
Eco47III AGCGCT 1 cut(s) 50
Eco57I CTGAAG 1 cut(s) 65
EcoRII CCWGG 3 cut(s) 37, 109, 129
EcoT14I CCWWGG 1 cut(s) 555
ErhI CCWWGG 1 cut(s) 555
FaeI CATG 3 cut(s) 70, 191, 353
FaiI YATR 5 cut(s) 68, 189, 324, 351, 526
FatI CATG 3 cut(s) 66, 187, 349
FauI CCCGC 1 cut(s) 433
FbaI TGATCA 1 cut(s) 73
Fnu4HI GCNGC 3 cut(s) 278, 387, 657
Fsp4HI GCNGC 3 cut(s) 278, 387, 657
FspBI CTAG 1 cut(s) 18
GlaI GCGC 2 cut(s) 50, 177
GluI GCNGC 3 cut(s) 278, 387, 657
HaeII RGCGCY 1 cut(s) 52
HaeIII GGCC 2 cut(s) 85, 104
HapII CCGG 4 cut(s) 86, 101, 151, 644
HgaI GACGC 1 cut(s) 414
HhaI GCGC 2 cut(s) 51, 178
Hin1I GRCGYC 1 cut(s) 425
Hin1II CATG 3 cut(s) 70, 191, 353
Hin6I GCGC 2 cut(s) 49, 176
HinP1I GCGC 2 cut(s) 49, 176
HinfI GANTC 1 cut(s) 395
HpaII CCGG 4 cut(s) 86, 101, 151, 644
HphI GGTGA 4 cut(s) 224, 308, 323, 445
Hpy188I TCNGA 4 cut(s) 337, 394, 462, 508
Hpy188III TCNNGA 1 cut(s) 290
Hpy99I CGWCG 2 cut(s) 172, 652
HpyAV CCTTC 3 cut(s) 108, 149, 569
HpyCH4III ACNGT 2 cut(s) 25, 652
HpyCH4IV ACGT 2 cut(s) 208, 591
HpyCH4V TGCA 2 cut(s) 250, 629
HpyF10VI GCNNNNNNNGC 3 cut(s) 182, 485, 653
HpyF3I CTNAG 1 cut(s) 334
HpySE526I ACGT 2 cut(s) 208, 591
Hsp92I GRCGYC 1 cut(s) 425
Hsp92II CATG 3 cut(s) 70, 191, 353
HspAI GCGC 2 cut(s) 49, 176
KroI GCCGGC 1 cut(s) 100
KroNI GCCGGC 1 cut(s) 102
Ksp22I TGATCA 1 cut(s) 73
Kzo9I GATC 4 cut(s) 73, 508, 520, 567
LmnI GCTCC 4 cut(s) 285, 362, 484, 618
Lsp1109I GCAGC 1 cut(s) 373
MaeI CTAG 1 cut(s) 18
MaeII ACGT 2 cut(s) 208, 591
MaeIII GTNAC 2 cut(s) 311, 550
MalI GATC 4 cut(s) 75, 510, 522, 569
MboI GATC 4 cut(s) 73, 508, 520, 567
MboII GAAGA 2 cut(s) 275, 350
MhlI GDGCHC 1 cut(s) 481
MluCI AATT 3 cut(s) 244, 304, 469
MlyI GAGTC 1 cut(s) 404
MmeI TCCRAC 2 cut(s) 384, 506
MnlI CCTC 2 cut(s) 267, 609
MroNI GCCGGC 1 cut(s) 100
MslI CAYNNNNRTG 2 cut(s) 192, 207
MspI CCGG 4 cut(s) 86, 101, 151, 644
MspR9I CCNGG 4 cut(s) 39, 111, 131, 152
MvaI CCWGG 3 cut(s) 39, 111, 131
MvnI CGCG 2 cut(s) 178, 488
MwoI GCNNNNNNNGC 3 cut(s) 182, 485, 653
NaeI GCCGGC 1 cut(s) 102
NciI CCSGG 1 cut(s) 152
NdeII GATC 4 cut(s) 73, 508, 520, 567
NgoMIV GCCGGC 1 cut(s) 100
NlaIII CATG 3 cut(s) 70, 191, 353
NlaIV GGNNCC 1 cut(s) 281
NmeAIII GCCGAG 1 cut(s) 586
NmuCI GTSAC 2 cut(s) 311, 550
PdiI GCCGGC 1 cut(s) 102
PfoI TCCNGGA 4 cut(s) 37, 109, 129, 150
PkrI GCNGC 3 cut(s) 279, 388, 658
PleI GAGTC 1 cut(s) 403
PpsI GAGTC 1 cut(s) 403
Psp6I CCWGG 3 cut(s) 37, 109, 129
PspGI CCWGG 3 cut(s) 37, 109, 129
PspN4I GGNNCC 1 cut(s) 281
PspPI GGNCC 1 cut(s) 234
RseI CAYNNNNRTG 2 cut(s) 192, 207
SatI GCNGC 3 cut(s) 278, 387, 657
Sau3AI GATC 4 cut(s) 73, 508, 520, 567
Sau96I GGNCC 1 cut(s) 234
SchI GAGTC 1 cut(s) 404
ScrFI CCNGG 4 cut(s) 39, 111, 131, 152
SduI GDGCHC 1 cut(s) 481
SetI ASST 8 cut(s) 82, 187, 211, 359, 435, 557, 594, 665
SinI GGWCC 1 cut(s) 234
SmiMI CAYNNNNRTG 2 cut(s) 192, 207
SmlI CTYRAG 2 cut(s) 288, 367
SmoI CTYRAG 2 cut(s) 288, 367
Sse9I AATT 3 cut(s) 244, 304, 469
SsiI CCGC 6 cut(s) 232, 277, 440, 486, 599, 656
SspMI CTAG 1 cut(s) 18
StyD4I CCNGG 4 cut(s) 37, 109, 129, 150
StyI CCWWGG 1 cut(s) 555
TaaI ACNGT 2 cut(s) 25, 652
TaiI ACGT 2 cut(s) 211, 594
TasI AATT 3 cut(s) 244, 304, 469
TauI GCSGC 2 cut(s) 280, 659
TseFI GTSAC 2 cut(s) 311, 550
TseI GCWGC 1 cut(s) 386
Tsp45I GTSAC 2 cut(s) 311, 550
TspDTI ATGAA 3 cut(s) 191, 311, 600
TspGWI ACGGA 1 cut(s) 71
VpaK11BI GGWCC 1 cut(s) 234
XapI RAATTY 1 cut(s) 244
XspI CTAG 1 cut(s) 18
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.