Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0000118

Physical Location & Seq

Genomic Coordinates Reverse (-)

1119399 .. 1120456

Gene Structure 1058 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g01181.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGAAAATTGTCCCCGTAAAGAGAAATCCTGCGTCCGTCAGGCTATATCTTCCATGTCTAAGCGCAACATTAGAGACTGACTCAAACATACCTGACTGGCTGCCTCTCTCCCTCCAAGATATAGCCAACAGTGTACAATTAAACAGTGCTAAGGAAGCTGAAATACAGGTGTTACAAATGATCCAAGATGGTGAGACATCTGCAACATTTAACAAGGGTGGAATGGTTAGCTTTGTTGAGGATCCTGAACAGAAAGGTTGGGACTTGGGAGAGGGGCAACGATTTGAGTTTGATGATTTTGATCCTGTTCTTCAGAGTGCGGACGTCCCTCTGTTCTCCACCGTCCGGCGCGGGCGACCGCGCGCCTCCACCCCAGAAGACTCCAGCAACCTCCCCGACCACTTTCCCTCACCGGCGAGTCCGTTCGTTTCCAGTTTTCCGACGAGATCGACTTTGTTTGAAGTTTTAGGTGATCTCACCGGAAAACTGGAAAAGAATGGACTCGCCAGAAAAGGAAAGTGGTCGGGGACGCTGGTGGAGTCTTCTGGGGTGGAGGCGTGCCGTCGCCGGCGCCGGAGGGTGGAGAACGGATGGACGTCCGCACTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000338 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007346 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010389 GO:0010564 GO:0010971 GO:0019538 GO:0019941 GO:0030163 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045787 GO:0045931 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051603 GO:0051726 GO:0065007 GO:0070646 GO:0070647 GO:0071704 GO:0090068 GO:1901564 GO:1901565 GO:1901575 GO:1901987 GO:1901989 GO:1901990 GO:1901992 GO:1902749 GO:1902751

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PCI

Protein Analysis

203

Amino Acids

22.32

Weight (kDa)

5.35

Isoelectric Point (pI)

68.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000118)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g01361 FvH4_1g07161 FvH4_1g07431 FvH4_1g07821 FvH4_1g08223 FvH4_1g10041 FvH4_1g12132 FvH4_1g15053 FvH4_1g18161 FvH4_1g18400 FvH4_1g18931 FvH4_1g19242 FvH4_1g19461 FvH4_1g20550 FvH4_1g21381 FvH4_1g21542 FvH4_1g22102 FvH4_1g23991 FvH4_1g24542 FvH4_1g24951 FvH4_1g24960 FvH4_1g25272 FvH4_1g25552 FvH4_1g25771 FvH4_1g28771 FvH4_1g29201 FvH4_1g29611 FvH4_2g01181 FvH4_2g02491 FvH4_2g04621 FvH4_2g04631 FvH4_2g07460 FvH4_2g08540 FvH4_2g08550 FvH4_2g09292 FvH4_2g10501 FvH4_2g12101 FvH4_2g12220 FvH4_2g12551 FvH4_2g14071 FvH4_2g14241 FvH4_2g15041 FvH4_2g15311 FvH4_2g18971 FvH4_2g19220 FvH4_2g19260 FvH4_2g19611 FvH4_2g19652 FvH4_2g20211 FvH4_2g20231 FvH4_2g21541 FvH4_2g22380 FvH4_2g27712 FvH4_2g28171 FvH4_2g29879 FvH4_2g32391 FvH4_3g02171 FvH4_3g05531 FvH4_3g09750 FvH4_3g10310 FvH4_3g10460 FvH4_3g13172 FvH4_3g15232 FvH4_3g18481 FvH4_3g18621 FvH4_3g20504 FvH4_3g20812 FvH4_3g22320 FvH4_3g22930 FvH4_3g22940 FvH4_3g23752 FvH4_3g24791 FvH4_3g26411 FvH4_3g26432 FvH4_3g27201 FvH4_3g27862 FvH4_3g28871 FvH4_3g28954 FvH4_3g29131 FvH4_3g29832 FvH4_3g29922 FvH4_3g30190 FvH4_3g32231 FvH4_3g32250 FvH4_3g33460 FvH4_3g34670 FvH4_3g36982 FvH4_3g37001 FvH4_3g38252 FvH4_3g38772 FvH4_3g40141 FvH4_3g40181 FvH4_3g42521 FvH4_4g00090 FvH4_4g00290 FvH4_4g00301 FvH4_4g00530 FvH4_4g00823 FvH4_4g02300 FvH4_4g02450 FvH4_4g03360 FvH4_4g04481 FvH4_4g04761 FvH4_4g06301 FvH4_4g06630 FvH4_4g08312 FvH4_4g08552 FvH4_4g10053 FvH4_4g11971 FvH4_4g13211 FvH4_4g13511 FvH4_4g15351 FvH4_4g16360 FvH4_4g16601 FvH4_4g18462 FvH4_4g22911 FvH4_4g23221 FvH4_4g24301 FvH4_4g24721 FvH4_4g27905 FvH4_4g28971 FvH4_4g29540 FvH4_4g30720 FvH4_4g31521 FvH4_4g33371 FvH4_4g34111 FvH4_4g35740 FvH4_5g00131 FvH4_5g02530 FvH4_5g02550 FvH4_5g02560 FvH4_5g02580 FvH4_5g03783 FvH4_5g05681 FvH4_5g05681 FvH4_5g09371 FvH4_5g09381 FvH4_5g14611 FvH4_5g15341 FvH4_5g19801 FvH4_5g20110 FvH4_5g20911 FvH4_5g22230 FvH4_5g25751 FvH4_5g26070 FvH4_5g26471 FvH4_5g27072 FvH4_5g27471 FvH4_5g27471 FvH4_5g27998 FvH4_5g28291 FvH4_5g30951 FvH4_5g31082 FvH4_5g31890 FvH4_5g32251 FvH4_5g34112 FvH4_5g37184 FvH4_5g37993 FvH4_5g38271 FvH4_6g00153 FvH4_6g00640 FvH4_6g05921 FvH4_6g08591 FvH4_6g09511 FvH4_6g10331 FvH4_6g10401 FvH4_6g14161 FvH4_6g14171 FvH4_6g18481 FvH4_6g19721 FvH4_6g19980 FvH4_6g20104 FvH4_6g20112 FvH4_6g21261 FvH4_6g21651 FvH4_6g22051 FvH4_6g23141 FvH4_6g24822 FvH4_6g25082 FvH4_6g25391 FvH4_6g25560 FvH4_6g26350 FvH4_6g27031 FvH4_6g27810 FvH4_6g27971 FvH4_6g28331 FvH4_6g29391 FvH4_6g30781 FvH4_6g32221 FvH4_6g34680 FvH4_6g36181 FvH4_6g36551 FvH4_6g37491 FvH4_6g37663 FvH4_6g39590 FvH4_6g40582 FvH4_6g43843 FvH4_6g50551 FvH4_7g00240 FvH4_7g00731 FvH4_7g01031 FvH4_7g03301 FvH4_7g08180 FvH4_7g08180 FvH4_7g10631 FvH4_7g19710 FvH4_7g23892 FvH4_7g25280 FvH4_7g25551 FvH4_7g30121 FvH4_7g31931 FvH4_7g32672 FvH4_c21g00040 FvH4_c2g00053
prunus_persica	Prupe.1G448800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0322451 RchiOBHm_Chr5g0015171
rosa_laevigata	RLG00000003077 RLG00000018186 RLG00000030343
rosa_multiflora	Rmu_co8096726.1_g000001
rosa_roxburghii	Rroxscaffold_157G00438380 Rroxscaffold_1G00001730 Rroxscaffold_3G00236310
rosa_rugosa	Rorug02G0236500
rosa_samantha	Rh4BG247300 Rh6BG286200 Rh6CG287300 Rh7DG257500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	327, 599
AccB1I	GGYRCC	1 cut(s)	570
AccII	CGCG	3 cut(s)	351, 361, 363
AciI	CCGC	4 cut(s)	320, 351, 359, 600
AclWI	GGATC	4 cut(s)	175, 236, 249, 296
AcuI	CTGAAG	1 cut(s)	296
AcyI	GRCGYC	3 cut(s)	324, 571, 596
AfaI	GTAC	1 cut(s)	135
AfiI	CCNNNNNNNGG	2 cut(s)	345, 580
AgsI	TTSAA	1 cut(s)	461
AluBI	AGCT	2 cut(s)	158, 231
AluI	AGCT	2 cut(s)	158, 231
Alw26I	GTCTC	2 cut(s)	68, 188
AlwI	GGATC	4 cut(s)	175, 236, 249, 296
ApeKI	GCWGC	1 cut(s)	100
AspLEI	GCGC	5 cut(s)	65, 351, 363, 365, 573
AsuHPI	GGTGA	4 cut(s)	203, 402, 469, 482
BamHI	GGATCC	1 cut(s)	241
BanI	GGYRCC	1 cut(s)	570
BarI	GAAGNNNNNNTAC	2 cut(s)	147, 179
BbsI	GAAGAC	2 cut(s)	384, 534
BbvI	GCAGC	1 cut(s)	87
BccI	CCATC	2 cut(s)	182, 585
BceAI	ACGGC	1 cut(s)	546
BcoDI	GTCTC	2 cut(s)	68, 188
BfoI	RGCGCY	1 cut(s)	574
BisI	GCNGC	1 cut(s)	101
BlsI	GCNGC	1 cut(s)	102
BmiI	GGNNCC	2 cut(s)	243, 572
BpiI	GAAGAC	2 cut(s)	384, 534
BplI	GAGNNNNNCTC	2 cut(s)	65, 97
BpmI	CTGGAG	1 cut(s)	367
Bpu10I	CCTNAGC	1 cut(s)	150
BsaBI	GATNNNNATC	1 cut(s)	300
BsaHI	GRCGYC	3 cut(s)	324, 571, 596
BsaWI	WCCGGW	1 cut(s)	479
Bsc4I	CCNNNNNNNGG	2 cut(s)	345, 580
Bse118I	RCCGGY	2 cut(s)	412, 567
Bse1I	ACTGG	3 cut(s)	101, 432, 492
Bse8I	GATNNNNATC	1 cut(s)	300
BseGI	GGATG	1 cut(s)	596
BseJI	GATNNNNATC	1 cut(s)	300
BseLI	CCNNNNNNNGG	2 cut(s)	345, 580
BseNI	ACTGG	3 cut(s)	101, 432, 492
BsePI	GCGCGC	1 cut(s)	361
BseXI	GCAGC	1 cut(s)	87
Bsh1236I	CGCG	3 cut(s)	351, 361, 363
Bsh1285I	CGRYCG	1 cut(s)	359
BshNI	GGYRCC	1 cut(s)	570
BsiEI	CGRYCG	1 cut(s)	359
BsiSI	CCGG	5 cut(s)	346, 413, 480, 568, 574
BslFI	GGGAC	3 cut(s)	275, 311, 541
BslI	CCNNNNNNNGG	2 cut(s)	345, 580
BsmAI	GTCTC	2 cut(s)	68, 188
BsmFI	GGGAC	3 cut(s)	275, 311, 541
Bsp1407I	TGTACA	1 cut(s)	133
Bsp143I	GATC	5 cut(s)	180, 241, 301, 446, 472
BspACI	CCGC	4 cut(s)	320, 351, 359, 600
BspFNI	CGCG	3 cut(s)	351, 361, 363
BspLI	GGNNCC	2 cut(s)	243, 572
BspPI	GGATC	4 cut(s)	175, 236, 249, 296
BspT107I	GGYRCC	1 cut(s)	570
BsrFI	RCCGGY	2 cut(s)	412, 567
BsrGI	TGTACA	1 cut(s)	133
BsrI	ACTGG	3 cut(s)	101, 432, 492
BssAI	RCCGGY	2 cut(s)	412, 567
BssHII	GCGCGC	1 cut(s)	361
BssMI	GATC	5 cut(s)	180, 241, 301, 446, 472
BssNI	GRCGYC	3 cut(s)	324, 571, 596
Bst4CI	ACNGT	3 cut(s)	131, 146, 343
BstACI	GRCGYC	3 cut(s)	324, 571, 596
BstAUI	TGTACA	1 cut(s)	133
BstC8I	GCNNGC	4 cut(s)	353, 363, 559, 569
BstDEI	CTNAG	2 cut(s)	59, 150
BstF5I	GGATG	1 cut(s)	596
BstFNI	CGCG	3 cut(s)	351, 361, 363
BstH2I	RGCGCY	1 cut(s)	574
BstHHI	GCGC	5 cut(s)	65, 351, 363, 365, 573
BstKTI	GATC	5 cut(s)	183, 244, 304, 449, 475
BstMAI	GTCTC	2 cut(s)	68, 188
BstMBI	GATC	5 cut(s)	180, 241, 301, 446, 472
BstMCI	CGRYCG	1 cut(s)	359
BstMWI	GCNNNNNNNGC	1 cut(s)	155
BstUI	CGCG	3 cut(s)	351, 361, 363
BstV1I	GCAGC	1 cut(s)	87
BstV2I	GAAGAC	2 cut(s)	384, 534
BstX2I	RGATCY	1 cut(s)	241
BstYI	RGATCY	1 cut(s)	241
BtsCI	GGATG	1 cut(s)	596
BtsIMutI	CAGTG	2 cut(s)	136, 151
Cac8I	GCNNGC	4 cut(s)	353, 363, 559, 569
CfoI	GCGC	5 cut(s)	65, 351, 363, 365, 573
Cfr10I	RCCGGY	2 cut(s)	412, 567
CseI	GACGC	2 cut(s)	21, 538
Csp6I	GTAC	1 cut(s)	134
CviAII	CATG	1 cut(s)	54
CviJI	RGCY	5 cut(s)	43, 100, 125, 158, 231
CviKI_1	RGCY	5 cut(s)	43, 100, 125, 158, 231
CviQI	GTAC	1 cut(s)	134
DdeI	CTNAG	2 cut(s)	59, 150
DinI	GGCGCC	1 cut(s)	572
DpnI	GATC	5 cut(s)	182, 243, 303, 448, 474
DpnII	GATC	5 cut(s)	180, 241, 301, 446, 472
Eco57I	CTGAAG	1 cut(s)	296
EgeI	GGCGCC	1 cut(s)	572
EheI	GGCGCC	1 cut(s)	572
FaeI	CATG	1 cut(s)	57
FaiI	YATR	4 cut(s)	46, 55, 89, 122
FaqI	GGGAC	3 cut(s)	275, 311, 541
FatI	CATG	1 cut(s)	53
FauI	CCCGC	1 cut(s)	344
Fnu4HI	GCNGC	1 cut(s)	101
FokI	GGATG	1 cut(s)	603
Fsp4HI	GCNGC	1 cut(s)	101
GlaI	GCGC	5 cut(s)	64, 350, 362, 364, 572
GluI	GCNGC	1 cut(s)	101
GsuI	CTGGAG	1 cut(s)	367
HaeII	RGCGCY	1 cut(s)	574
HapII	CCGG	5 cut(s)	346, 413, 480, 568, 574
HgaI	GACGC	2 cut(s)	21, 538
HhaI	GCGC	5 cut(s)	65, 351, 363, 365, 573
Hin1I	GRCGYC	3 cut(s)	324, 571, 596
Hin1II	CATG	1 cut(s)	57
Hin6I	GCGC	5 cut(s)	63, 349, 361, 363, 571
HinP1I	GCGC	5 cut(s)	63, 349, 361, 363, 571
HinfI	GANTC	5 cut(s)	80, 380, 418, 501, 539
HpaII	CCGG	5 cut(s)	346, 413, 480, 568, 574
HphI	GGTGA	4 cut(s)	203, 402, 469, 482
Hpy166II	GTNNAC	1 cut(s)	134
Hpy188I	TCNGA	2 cut(s)	315, 441
Hpy188III	TCNNGA	1 cut(s)	245
Hpy8I	GTNNAC	1 cut(s)	134
Hpy99I	CGWCG	2 cut(s)	445, 567
HpyCH4III	ACNGT	3 cut(s)	131, 146, 343
HpyCH4IV	ACGT	2 cut(s)	324, 596
HpyCH4V	TGCA	1 cut(s)	203
HpyF10VI	GCNNNNNNNGC	1 cut(s)	155
HpyF3I	CTNAG	2 cut(s)	59, 150
HpySE526I	ACGT	2 cut(s)	324, 596
Hsp92I	GRCGYC	3 cut(s)	324, 571, 596
Hsp92II	CATG	1 cut(s)	57
HspAI	GCGC	5 cut(s)	63, 349, 361, 363, 571
KasI	GGCGCC	1 cut(s)	570
KroI	GCCGGC	1 cut(s)	567
KroNI	GCCGGC	1 cut(s)	569
Kzo9I	GATC	5 cut(s)	180, 241, 301, 446, 472
Lsp1109I	GCAGC	1 cut(s)	87
MaeII	ACGT	2 cut(s)	324, 596
MaeIII	GTNAC	1 cut(s)	171
MalI	GATC	5 cut(s)	182, 243, 303, 448, 474
MboI	GATC	5 cut(s)	180, 241, 301, 446, 472
MboII	GAAGA	4 cut(s)	41, 302, 389, 534
MflI	RGATCY	1 cut(s)	241
MluCI	AATT	2 cut(s)	6, 137
Mly113I	GGCGCC	1 cut(s)	571
MlyI	GAGTC	5 cut(s)	74, 374, 427, 495, 548
MmeI	TCCRAC	1 cut(s)	464
MreI	CGCCGGCG	1 cut(s)	567
MroNI	GCCGGC	1 cut(s)	567
MseI	TTAA	3 cut(s)	140, 210, 607
MspI	CCGG	5 cut(s)	346, 413, 480, 568, 574
MvnI	CGCG	3 cut(s)	351, 361, 363
MwoI	GCNNNNNNNGC	1 cut(s)	155
NaeI	GCCGGC	1 cut(s)	569
NarI	GGCGCC	1 cut(s)	571
NdeII	GATC	5 cut(s)	180, 241, 301, 446, 472
NgoMIV	GCCGGC	1 cut(s)	567
NlaIII	CATG	1 cut(s)	57
NlaIV	GGNNCC	2 cut(s)	243, 572
PauI	GCGCGC	1 cut(s)	361
PdiI	GCCGGC	1 cut(s)	569
PkrI	GCNGC	1 cut(s)	102
PleI	GAGTC	5 cut(s)	74, 374, 426, 495, 547
PluTI	GGCGCC	1 cut(s)	574
PpsI	GAGTC	5 cut(s)	74, 374, 426, 495, 547
PspN4I	GGNNCC	2 cut(s)	243, 572
PsuI	RGATCY	1 cut(s)	241
PteI	GCGCGC	1 cut(s)	361
RsaI	GTAC	1 cut(s)	135
RsaNI	GTAC	1 cut(s)	134
SaqAI	TTAA	3 cut(s)	140, 210, 607
SatI	GCNGC	1 cut(s)	101
Sau3AI	GATC	5 cut(s)	180, 241, 301, 446, 472
SchI	GAGTC	5 cut(s)	74, 374, 427, 495, 548
SetI	ASST	9 cut(s)	94, 160, 171, 233, 259, 327, 393, 472, 599
SfoI	GGCGCC	1 cut(s)	572
SgrAI	CRCCGGYG	2 cut(s)	412, 567
Sse9I	AATT	2 cut(s)	6, 137
SsiI	CCGC	4 cut(s)	320, 351, 359, 600
SspDI	GGCGCC	1 cut(s)	570
TaaI	ACNGT	3 cut(s)	131, 146, 343
TaiI	ACGT	2 cut(s)	327, 599
TaqI	TCGA	1 cut(s)	449
TasI	AATT	2 cut(s)	6, 137
TatI	WGTACW	1 cut(s)	133
Tru1I	TTAA	3 cut(s)	140, 210, 607
Tru9I	TTAA	3 cut(s)	140, 210, 607
TscAI	CASTG	2 cut(s)	136, 151
TseI	GCWGC	1 cut(s)	100
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	3 cut(s)	25, 411, 603
TspRI	CASTG	2 cut(s)	136, 151
ZraI	GACGTC	2 cut(s)	325, 597

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.