FvH4_1g20550

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000118
Physical Location & Seq
Reverse (-)
12758840 .. 12764340
5501 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g20550.t1

Sequence Viewer

Length: 417 bp
ATGGCGCATCCAAGGAAGGCAAACCTGGGCCACCACGGTGGCAGGGGCGAACGCCTTGATGGAGGTGAAGCAGGGTTCGGGCTCAGTGTTAAGGATGGTGGTTCAGAAGGGAGAGAGAGGGTTGCATCAGAAGAGGTTCTAGCTAGTCATGCTGCTACTGCTTCGTTTCTTTTCCAATCCGATTTCGAATCAATTCCCTGGGTGGACTCAACGGTGAGGATGGTGAGGGGGAAGGCCCGCTGTGAAGTGGACGTCCGCACCGAAGAAAAAGTGCAGACTTTTCTCTGTTTTCCTCCGTCCGGCGCCGACGACAGCGCCCTTCCACCTGAGTGGACACCAAAGGCATCCCCGATCACTTTCTCTTGCCGACGAGATCGATTTGAAGGTCTGGGCAGCAACCTCCACCCAAAACTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

139

Amino Acids

14.99

Weight (kDa)

6.2

Isoelectric Point (pI)

35.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000118)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01361 FvH4_1g07161 FvH4_1g07431 FvH4_1g07821 FvH4_1g08223 FvH4_1g10041 FvH4_1g12132 FvH4_1g15053 FvH4_1g18161 FvH4_1g18400 FvH4_1g18931 FvH4_1g19242 FvH4_1g19461 FvH4_1g20550 FvH4_1g21381 FvH4_1g21542 FvH4_1g22102 FvH4_1g23991 FvH4_1g24542 FvH4_1g24951 FvH4_1g24960 FvH4_1g25272 FvH4_1g25552 FvH4_1g25771 FvH4_1g28771 FvH4_1g29201 FvH4_1g29611 FvH4_2g01181 FvH4_2g02491 FvH4_2g04621 FvH4_2g04631 FvH4_2g07460 FvH4_2g08540 FvH4_2g08550 FvH4_2g09292 FvH4_2g10501 FvH4_2g12101 FvH4_2g12220 FvH4_2g12551 FvH4_2g14071 FvH4_2g14241 FvH4_2g15041 FvH4_2g15311 FvH4_2g18971 FvH4_2g19220 FvH4_2g19260 FvH4_2g19611 FvH4_2g19652 FvH4_2g20211 FvH4_2g20231 FvH4_2g21541 FvH4_2g22380 FvH4_2g27712 FvH4_2g28171 FvH4_2g29879 FvH4_2g32391 FvH4_3g02171 FvH4_3g05531 FvH4_3g09750 FvH4_3g10310 FvH4_3g10460 FvH4_3g13172 FvH4_3g15232 FvH4_3g18481 FvH4_3g18621 FvH4_3g20504 FvH4_3g20812 FvH4_3g22320 FvH4_3g22930 FvH4_3g22940 FvH4_3g23752 FvH4_3g24791 FvH4_3g26411 FvH4_3g26432 FvH4_3g27201 FvH4_3g27862 FvH4_3g28871 FvH4_3g28954 FvH4_3g29131 FvH4_3g29832 FvH4_3g29922 FvH4_3g30190 FvH4_3g32231 FvH4_3g32250 FvH4_3g33460 FvH4_3g34670 FvH4_3g36982 FvH4_3g37001 FvH4_3g38252 FvH4_3g38772 FvH4_3g40141 FvH4_3g40181 FvH4_3g42521 FvH4_4g00090 FvH4_4g00290 FvH4_4g00301 FvH4_4g00530 FvH4_4g00823 FvH4_4g02300 FvH4_4g02450 FvH4_4g03360 FvH4_4g04481 FvH4_4g04761 FvH4_4g06301 FvH4_4g06630 FvH4_4g08312 FvH4_4g08552 FvH4_4g10053 FvH4_4g11971 FvH4_4g13211 FvH4_4g13511 FvH4_4g15351 FvH4_4g16360 FvH4_4g16601 FvH4_4g18462 FvH4_4g22911 FvH4_4g23221 FvH4_4g24301 FvH4_4g24721 FvH4_4g27905 FvH4_4g28971 FvH4_4g29540 FvH4_4g30720 FvH4_4g31521 FvH4_4g33371 FvH4_4g34111 FvH4_4g35740 FvH4_5g00131 FvH4_5g02530 FvH4_5g02550 FvH4_5g02560 FvH4_5g02580 FvH4_5g03783 FvH4_5g05681 FvH4_5g05681 FvH4_5g09371 FvH4_5g09381 FvH4_5g14611 FvH4_5g15341 FvH4_5g19801 FvH4_5g20110 FvH4_5g20911 FvH4_5g22230 FvH4_5g25751 FvH4_5g26070 FvH4_5g26471 FvH4_5g27072 FvH4_5g27471 FvH4_5g27471 FvH4_5g27998 FvH4_5g28291 FvH4_5g30951 FvH4_5g31082 FvH4_5g31890 FvH4_5g32251 FvH4_5g34112 FvH4_5g37184 FvH4_5g37993 FvH4_5g38271 FvH4_6g00153 FvH4_6g00640 FvH4_6g05921 FvH4_6g08591 FvH4_6g09511 FvH4_6g10331 FvH4_6g10401 FvH4_6g14161 FvH4_6g14171 FvH4_6g18481 FvH4_6g19721 FvH4_6g19980 FvH4_6g20104 FvH4_6g20112 FvH4_6g21261 FvH4_6g21651 FvH4_6g22051 FvH4_6g23141 FvH4_6g24822 FvH4_6g25082 FvH4_6g25391 FvH4_6g25560 FvH4_6g26350 FvH4_6g27031 FvH4_6g27810 FvH4_6g27971 FvH4_6g28331 FvH4_6g29391 FvH4_6g30781 FvH4_6g32221 FvH4_6g34680 FvH4_6g36181 FvH4_6g36551 FvH4_6g37491 FvH4_6g37663 FvH4_6g39590 FvH4_6g40582 FvH4_6g43843 FvH4_6g50551 FvH4_7g00240 FvH4_7g00731 FvH4_7g01031 FvH4_7g03301 FvH4_7g08180 FvH4_7g08180 FvH4_7g10631 FvH4_7g19710 FvH4_7g23892 FvH4_7g25280 FvH4_7g25551 FvH4_7g30121 FvH4_7g31931 FvH4_7g32672 FvH4_c21g00040 FvH4_c2g00053
prunus_persica Prupe.1G448800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322451 RchiOBHm_Chr5g0015171
rosa_laevigata RLG00000003077 RLG00000018186 RLG00000030343
rosa_multiflora Rmu_co8096726.1_g000001
rosa_roxburghii Rroxscaffold_157G00438380 Rroxscaffold_1G00001730 Rroxscaffold_3G00236310
rosa_rugosa Rorug02G0236500
rosa_samantha Rh4BG247300 Rh6BG286200 Rh6CG287300 Rh7DG257500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 255
AccB1I GGYRCC 1 cut(s) 302
AciI CCGC 2 cut(s) 238, 256
AcyI GRCGYC 2 cut(s) 252, 303
AfiI CCNNNNNNNGG 1 cut(s) 299
AgsI TTSAA 1 cut(s) 383
AjnI CCWGG 2 cut(s) 24, 197
AleI CACNNNNGTG 2 cut(s) 36, 328
AluBI AGCT 1 cut(s) 143
AluI AGCT 1 cut(s) 143
AoxI GGCC 2 cut(s) 28, 234
ApeKI GCWGC 2 cut(s) 152, 393
Asp700I GAANNNNTTC 2 cut(s) 135, 192
AspLEI GCGC 3 cut(s) 7, 305, 317
AspS9I GGNCC 2 cut(s) 28, 235
AsuHPI GGTGA 3 cut(s) 77, 226, 235
AsuII TTCGAA 1 cut(s) 186
BanI GGYRCC 1 cut(s) 302
BanII GRGCYC 1 cut(s) 84
BbvI GCAGC 2 cut(s) 139, 405
BccI CCATC 3 cut(s) 53, 89, 214
BciT130I CCWGG 2 cut(s) 26, 199
BfaI CTAG 2 cut(s) 140, 144
BfoI RGCGCY 2 cut(s) 306, 318
BisI GCNGC 2 cut(s) 153, 394
BlsI GCNGC 2 cut(s) 154, 395
Bme1390I CCNGG 2 cut(s) 26, 199
BmgT120I GGNCC 2 cut(s) 28, 235
BmiI GGNNCC 1 cut(s) 304
BmrFI CCNGG 2 cut(s) 26, 199
BmsI GCATC 3 cut(s) 16, 134, 353
Bpu14I TTCGAA 1 cut(s) 186
Bsa29I ATCGAT 1 cut(s) 376
BsaHI GRCGYC 2 cut(s) 252, 303
BsaJI CCNNGG 5 cut(s) 11, 25, 34, 197, 198
Bsc4I CCNNNNNNNGG 1 cut(s) 299
BseBI CCWGG 2 cut(s) 26, 199
BseCI ATCGAT 1 cut(s) 376
BseDI CCNNGG 5 cut(s) 11, 25, 34, 197, 198
BseGI GGATG 4 cut(s) 7, 100, 225, 344
BseLI CCNNNNNNNGG 1 cut(s) 299
BseMII CTCAG 2 cut(s) 97, 318
BseXI GCAGC 2 cut(s) 139, 405
BsgI GTGCAG 1 cut(s) 293
BshFI GGCC 2 cut(s) 30, 236
BshNI GGYRCC 1 cut(s) 302
BshVI ATCGAT 1 cut(s) 376
BsiSI CCGG 1 cut(s) 300
BslI CCNNNNNNNGG 1 cut(s) 299
BsnI GGCC 2 cut(s) 30, 236
Bsp119I TTCGAA 1 cut(s) 186
Bsp1286I GDGCHC 1 cut(s) 84
Bsp143I GATC 2 cut(s) 351, 373
BspACI CCGC 2 cut(s) 238, 256
BspANI GGCC 2 cut(s) 30, 236
BspCNI CTCAG 2 cut(s) 96, 319
BspDI ATCGAT 1 cut(s) 376
BspLI GGNNCC 1 cut(s) 304
BspT104I TTCGAA 1 cut(s) 186
BspT107I GGYRCC 1 cut(s) 302
BssECI CCNNGG 5 cut(s) 11, 25, 34, 197, 198
BssMI GATC 2 cut(s) 351, 373
BssNI GRCGYC 2 cut(s) 252, 303
BssT1I CCWWGG 1 cut(s) 11
Bst2UI CCWGG 2 cut(s) 26, 199
Bst4CI ACNGT 2 cut(s) 38, 214
Bst6I CTCTTC 1 cut(s) 126
BstACI GRCGYC 2 cut(s) 252, 303
BstBI TTCGAA 1 cut(s) 186
BstC8I GCNNGC 1 cut(s) 238
BstDEI CTNAG 2 cut(s) 83, 327
BstDSI CCRYGG 1 cut(s) 34
BstF5I GGATG 4 cut(s) 7, 100, 225, 344
BstH2I RGCGCY 2 cut(s) 306, 318
BstHHI GCGC 3 cut(s) 7, 305, 317
BstKTI GATC 2 cut(s) 354, 376
BstMBI GATC 2 cut(s) 351, 373
BstMWI GCNNNNNNNGC 2 cut(s) 149, 158
BstNI CCWGG 2 cut(s) 26, 199
BstSCI CCNGG 2 cut(s) 24, 197
BstV1I GCAGC 2 cut(s) 139, 405
BstXI CCANNNNNNTGG 2 cut(s) 38, 330
Bsu15I ATCGAT 1 cut(s) 376
BsuRI GGCC 2 cut(s) 30, 236
BsuTUI ATCGAT 1 cut(s) 376
BtgI CCRYGG 1 cut(s) 34
BtsCI GGATG 4 cut(s) 7, 100, 225, 344
BtsIMutI CAGTG 1 cut(s) 91
Cac8I GCNNGC 1 cut(s) 238
CfoI GCGC 3 cut(s) 7, 305, 317
Cfr13I GGNCC 2 cut(s) 28, 235
ClaI ATCGAT 1 cut(s) 376
CviAII CATG 1 cut(s) 149
CviJI RGCY 4 cut(s) 30, 82, 143, 236
CviKI_1 RGCY 4 cut(s) 30, 82, 143, 236
DdeI CTNAG 2 cut(s) 83, 327
DinI GGCGCC 1 cut(s) 304
DpnI GATC 2 cut(s) 353, 375
DpnII GATC 2 cut(s) 351, 373
Eam1104I CTCTTC 1 cut(s) 126
EarI CTCTTC 1 cut(s) 126
Eco130I CCWWGG 1 cut(s) 11
Eco24I GRGCYC 1 cut(s) 84
EcoRII CCWGG 2 cut(s) 24, 197
EcoT14I CCWWGG 1 cut(s) 11
EcoT38I GRGCYC 1 cut(s) 84
EgeI GGCGCC 1 cut(s) 304
EheI GGCGCC 1 cut(s) 304
ErhI CCWWGG 1 cut(s) 11
FaeI CATG 1 cut(s) 152
FaiI YATR 1 cut(s) 150
FatI CATG 1 cut(s) 148
FauI CCCGC 1 cut(s) 245
Fnu4HI GCNGC 2 cut(s) 153, 394
FokI GGATG 3 cut(s) 107, 232, 331
FriOI GRGCYC 1 cut(s) 84
Fsp4HI GCNGC 2 cut(s) 153, 394
FspBI CTAG 2 cut(s) 140, 144
GlaI GCGC 3 cut(s) 6, 304, 316
GluI GCNGC 2 cut(s) 153, 394
HaeII RGCGCY 2 cut(s) 306, 318
HaeIII GGCC 2 cut(s) 30, 236
HapII CCGG 1 cut(s) 300
HhaI GCGC 3 cut(s) 7, 305, 317
Hin1I GRCGYC 2 cut(s) 252, 303
Hin1II CATG 1 cut(s) 152
Hin6I GCGC 3 cut(s) 5, 303, 315
HinP1I GCGC 3 cut(s) 5, 303, 315
HinfI GANTC 2 cut(s) 188, 206
HpaII CCGG 1 cut(s) 300
HphI GGTGA 3 cut(s) 77, 226, 235
Hpy166II GTNNAC 3 cut(s) 205, 250, 333
Hpy188I TCNGA 3 cut(s) 106, 130, 181
Hpy8I GTNNAC 3 cut(s) 205, 250, 333
Hpy99I CGWCG 2 cut(s) 311, 372
HpyAV CCTTC 5 cut(s) 10, 101, 226, 329, 377
HpyCH4III ACNGT 2 cut(s) 38, 214
HpyCH4IV ACGT 1 cut(s) 252
HpyCH4V TGCA 2 cut(s) 125, 274
HpyF10VI GCNNNNNNNGC 2 cut(s) 149, 158
HpyF3I CTNAG 2 cut(s) 83, 327
HpySE526I ACGT 1 cut(s) 252
Hsp92I GRCGYC 2 cut(s) 252, 303
Hsp92II CATG 1 cut(s) 152
HspAI GCGC 3 cut(s) 5, 303, 315
KasI GGCGCC 1 cut(s) 302
Kzo9I GATC 2 cut(s) 351, 373
LpnPI CCDG 9 cut(s) 11, 28, 38, 57, 184, 211, 313, 339, 374
Lsp1109I GCAGC 2 cut(s) 139, 405
LweI GCATC 3 cut(s) 16, 134, 353
MaeI CTAG 2 cut(s) 140, 144
MaeII ACGT 1 cut(s) 252
MalI GATC 2 cut(s) 353, 375
MboI GATC 2 cut(s) 351, 373
MboII GAAGA 2 cut(s) 143, 275
MhlI GDGCHC 1 cut(s) 84
MluCI AATT 1 cut(s) 192
Mly113I GGCGCC 1 cut(s) 303
MlyI GAGTC 1 cut(s) 200
MnlI CCTC 7 cut(s) 56, 111, 127, 210, 219, 303, 410
MroXI GAANNNNTTC 2 cut(s) 135, 192
MseI TTAA 1 cut(s) 90
MslI CAYNNNNRTG 2 cut(s) 36, 328
MspA1I CMGCKG 1 cut(s) 240
MspI CCGG 1 cut(s) 300
MspR9I CCNGG 2 cut(s) 26, 199
MvaI CCWGG 2 cut(s) 26, 199
MwoI GCNNNNNNNGC 2 cut(s) 149, 158
NarI GGCGCC 1 cut(s) 303
NdeII GATC 2 cut(s) 351, 373
NlaIII CATG 1 cut(s) 152
NlaIV GGNNCC 1 cut(s) 304
NspV TTCGAA 1 cut(s) 186
OliI CACNNNNGTG 2 cut(s) 36, 328
PasI CCCWGGG 1 cut(s) 198
PcsI WCGNNNNNNNCGW 1 cut(s) 258
PdmI GAANNNNTTC 2 cut(s) 135, 192
PfeI GAWTC 1 cut(s) 188
PkrI GCNGC 2 cut(s) 154, 395
PleI GAGTC 1 cut(s) 200
PluTI GGCGCC 1 cut(s) 306
PpsI GAGTC 1 cut(s) 200
Psp6I CCWGG 2 cut(s) 24, 197
PspGI CCWGG 2 cut(s) 24, 197
PspN4I GGNNCC 1 cut(s) 304
PspPI GGNCC 2 cut(s) 28, 235
RseI CAYNNNNRTG 2 cut(s) 36, 328
SaqAI TTAA 1 cut(s) 90
SatI GCNGC 2 cut(s) 153, 394
Sau3AI GATC 2 cut(s) 351, 373
Sau96I GGNCC 2 cut(s) 28, 235
SchI GAGTC 1 cut(s) 200
ScrFI CCNGG 2 cut(s) 26, 199
SduI GDGCHC 1 cut(s) 84
SetI ASST 8 cut(s) 27, 67, 138, 145, 255, 328, 388, 402
SfaNI GCATC 3 cut(s) 16, 134, 353
SfoI GGCGCC 1 cut(s) 304
SfuI TTCGAA 1 cut(s) 186
SmiMI CAYNNNNRTG 2 cut(s) 36, 328
Sse9I AATT 1 cut(s) 192
SsiI CCGC 2 cut(s) 238, 256
SspDI GGCGCC 1 cut(s) 302
SspMI CTAG 2 cut(s) 140, 144
StyD4I CCNGG 2 cut(s) 24, 197
StyI CCWWGG 1 cut(s) 11
TaaI ACNGT 2 cut(s) 38, 214
TaiI ACGT 1 cut(s) 255
TaqI TCGA 2 cut(s) 186, 376
TasI AATT 1 cut(s) 192
TfiI GAWTC 1 cut(s) 188
Tru1I TTAA 1 cut(s) 90
Tru9I TTAA 1 cut(s) 90
TscAI CASTG 1 cut(s) 91
TseI GCWGC 2 cut(s) 152, 393
TspGWI ACGGA 1 cut(s) 285
TspRI CASTG 1 cut(s) 91
XmnI GAANNNNTTC 2 cut(s) 135, 192
XspI CTAG 2 cut(s) 140, 144
ZraI GACGTC 1 cut(s) 253
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.