FvH4_3g29131

Belongs to the small heat shock protein (HSP20) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000118
Physical Location & Seq
Reverse (-)
22243361 .. 22246391
3031 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g29131.t1

Sequence Viewer

Length: 273 bp
ATGCCGGGGCTCAAGTCAGGGGACATCAAGGTGCAGGTGGAGGATGACAATGTGCTTGTGATCAGCGGAGAGAGGAAGAGGGAGGACGAGAGGACTGATTTTCCGGCGAGATCACCCAAAACTTCAAACAAGATCATTCTCGCCAGAAAACTGGAAAAGAACAGACTCGCCGGAGAGGGAAAGTGGTCGGGGACGCTGCTGGAGTCTTTTGGGGTGGAGGCGCGCCGTCGTCGGCACCAGAGGGTGGAGAACGGATGGACATCCACACTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
HSP20

Protein Analysis

91

Amino Acids

10.25

Weight (kDa)

9.98

Isoelectric Point (pI)

52.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSP20 PF00011 1 - 59 8.4e-06 Hsp20/alpha crystallin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000118)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01361 FvH4_1g07161 FvH4_1g07431 FvH4_1g07821 FvH4_1g08223 FvH4_1g10041 FvH4_1g12132 FvH4_1g15053 FvH4_1g18161 FvH4_1g18400 FvH4_1g18931 FvH4_1g19242 FvH4_1g19461 FvH4_1g20550 FvH4_1g21381 FvH4_1g21542 FvH4_1g22102 FvH4_1g23991 FvH4_1g24542 FvH4_1g24951 FvH4_1g24960 FvH4_1g25272 FvH4_1g25552 FvH4_1g25771 FvH4_1g28771 FvH4_1g29201 FvH4_1g29611 FvH4_2g01181 FvH4_2g02491 FvH4_2g04621 FvH4_2g04631 FvH4_2g07460 FvH4_2g08540 FvH4_2g08550 FvH4_2g09292 FvH4_2g10501 FvH4_2g12101 FvH4_2g12220 FvH4_2g12551 FvH4_2g14071 FvH4_2g14241 FvH4_2g15041 FvH4_2g15311 FvH4_2g18971 FvH4_2g19220 FvH4_2g19260 FvH4_2g19611 FvH4_2g19652 FvH4_2g20211 FvH4_2g20231 FvH4_2g21541 FvH4_2g22380 FvH4_2g27712 FvH4_2g28171 FvH4_2g29879 FvH4_2g32391 FvH4_3g02171 FvH4_3g05531 FvH4_3g09750 FvH4_3g10310 FvH4_3g10460 FvH4_3g13172 FvH4_3g15232 FvH4_3g18481 FvH4_3g18621 FvH4_3g20504 FvH4_3g20812 FvH4_3g22320 FvH4_3g22930 FvH4_3g22940 FvH4_3g23752 FvH4_3g24791 FvH4_3g26411 FvH4_3g26432 FvH4_3g27201 FvH4_3g27862 FvH4_3g28871 FvH4_3g28954 FvH4_3g29131 FvH4_3g29832 FvH4_3g29922 FvH4_3g30190 FvH4_3g32231 FvH4_3g32250 FvH4_3g33460 FvH4_3g34670 FvH4_3g36982 FvH4_3g37001 FvH4_3g38252 FvH4_3g38772 FvH4_3g40141 FvH4_3g40181 FvH4_3g42521 FvH4_4g00090 FvH4_4g00290 FvH4_4g00301 FvH4_4g00530 FvH4_4g00823 FvH4_4g02300 FvH4_4g02450 FvH4_4g03360 FvH4_4g04481 FvH4_4g04761 FvH4_4g06301 FvH4_4g06630 FvH4_4g08312 FvH4_4g08552 FvH4_4g10053 FvH4_4g11971 FvH4_4g13211 FvH4_4g13511 FvH4_4g15351 FvH4_4g16360 FvH4_4g16601 FvH4_4g18462 FvH4_4g22911 FvH4_4g23221 FvH4_4g24301 FvH4_4g24721 FvH4_4g27905 FvH4_4g28971 FvH4_4g29540 FvH4_4g30720 FvH4_4g31521 FvH4_4g33371 FvH4_4g34111 FvH4_4g35740 FvH4_5g00131 FvH4_5g02530 FvH4_5g02550 FvH4_5g02560 FvH4_5g02580 FvH4_5g03783 FvH4_5g05681 FvH4_5g05681 FvH4_5g09371 FvH4_5g09381 FvH4_5g14611 FvH4_5g15341 FvH4_5g19801 FvH4_5g20110 FvH4_5g20911 FvH4_5g22230 FvH4_5g25751 FvH4_5g26070 FvH4_5g26471 FvH4_5g27072 FvH4_5g27471 FvH4_5g27471 FvH4_5g27998 FvH4_5g28291 FvH4_5g30951 FvH4_5g31082 FvH4_5g31890 FvH4_5g32251 FvH4_5g34112 FvH4_5g37184 FvH4_5g37993 FvH4_5g38271 FvH4_6g00153 FvH4_6g00640 FvH4_6g05921 FvH4_6g08591 FvH4_6g09511 FvH4_6g10331 FvH4_6g10401 FvH4_6g14161 FvH4_6g14171 FvH4_6g18481 FvH4_6g19721 FvH4_6g19980 FvH4_6g20104 FvH4_6g20112 FvH4_6g21261 FvH4_6g21651 FvH4_6g22051 FvH4_6g23141 FvH4_6g24822 FvH4_6g25082 FvH4_6g25391 FvH4_6g25560 FvH4_6g26350 FvH4_6g27031 FvH4_6g27810 FvH4_6g27971 FvH4_6g28331 FvH4_6g29391 FvH4_6g30781 FvH4_6g32221 FvH4_6g34680 FvH4_6g36181 FvH4_6g36551 FvH4_6g37491 FvH4_6g37663 FvH4_6g39590 FvH4_6g40582 FvH4_6g43843 FvH4_6g50551 FvH4_7g00240 FvH4_7g00731 FvH4_7g01031 FvH4_7g03301 FvH4_7g08180 FvH4_7g08180 FvH4_7g10631 FvH4_7g19710 FvH4_7g23892 FvH4_7g25280 FvH4_7g25551 FvH4_7g30121 FvH4_7g31931 FvH4_7g32672 FvH4_c21g00040 FvH4_c2g00053
prunus_persica Prupe.1G448800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322451 RchiOBHm_Chr5g0015171
rosa_laevigata RLG00000003077 RLG00000018186 RLG00000030343
rosa_multiflora Rmu_co8096726.1_g000001
rosa_roxburghii Rroxscaffold_157G00438380 Rroxscaffold_1G00001730 Rroxscaffold_3G00236310
rosa_rugosa Rorug02G0236500
rosa_samantha Rh4BG247300 Rh6BG286200 Rh6CG287300 Rh7DG257500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 25
Acc36I ACCTGC 1 cut(s) 25
AccB1I GGYRCC 1 cut(s) 234
AccB7I CCANNNNNTGG 1 cut(s) 244
AccII CGCG 1 cut(s) 223
AciI CCGC 1 cut(s) 66
AfiI CCNNNNNNNGG 1 cut(s) 244
AgsI TTSAA 1 cut(s) 126
ApeKI GCWGC 1 cut(s) 196
AscI GGCGCGCC 1 cut(s) 221
AspLEI GCGC 2 cut(s) 223, 225
AsuC2I CCSGG 1 cut(s) 6
AsuHPI GGTGA 1 cut(s) 105
BanI GGYRCC 1 cut(s) 234
BanII GRGCYC 1 cut(s) 12
BbvI GCAGC 1 cut(s) 183
BccI CCATC 1 cut(s) 249
BceAI ACGGC 1 cut(s) 210
BclI TGATCA 1 cut(s) 60
BcnI CCSGG 1 cut(s) 6
BfuAI ACCTGC 1 cut(s) 25
BisI GCNGC 1 cut(s) 197
BlsI GCNGC 1 cut(s) 198
Bme1390I CCNGG 1 cut(s) 6
BmiI GGNNCC 1 cut(s) 236
BmrFI CCNGG 1 cut(s) 6
BpmI CTGGAG 1 cut(s) 221
BpuMI CCSGG 1 cut(s) 6
BsaBI GATNNNNATC 1 cut(s) 259
BsaJI CCNNGG 1 cut(s) 5
Bsc4I CCNNNNNNNGG 1 cut(s) 244
Bse1I ACTGG 1 cut(s) 156
Bse8I GATNNNNATC 1 cut(s) 259
BseDI CCNNGG 1 cut(s) 5
BseGI GGATG 3 cut(s) 49, 260, 260
BseJI GATNNNNATC 1 cut(s) 259
BseLI CCNNNNNNNGG 1 cut(s) 244
BseNI ACTGG 1 cut(s) 156
BsePI GCGCGC 1 cut(s) 221
BseXI GCAGC 1 cut(s) 183
BsgI GTGCAG 1 cut(s) 53
Bsh1236I CGCG 1 cut(s) 223
BshNI GGYRCC 1 cut(s) 234
BsiSI CCGG 3 cut(s) 5, 104, 171
BslFI GGGAC 2 cut(s) 35, 205
BslI CCNNNNNNNGG 1 cut(s) 244
BsmFI GGGAC 2 cut(s) 35, 205
Bsp1286I GDGCHC 1 cut(s) 12
Bsp143I GATC 3 cut(s) 60, 110, 132
BspACI CCGC 1 cut(s) 66
BspFNI CGCG 1 cut(s) 223
BspLI GGNNCC 1 cut(s) 236
BspMI ACCTGC 1 cut(s) 25
BspT107I GGYRCC 1 cut(s) 234
BsrI ACTGG 1 cut(s) 156
BssECI CCNNGG 1 cut(s) 5
BssHII GCGCGC 1 cut(s) 221
BssMI GATC 3 cut(s) 60, 110, 132
Bst6I CTCTTC 1 cut(s) 71
BstC8I GCNNGC 1 cut(s) 223
BstF5I GGATG 3 cut(s) 49, 260, 260
BstFNI CGCG 1 cut(s) 223
BstHHI GCGC 2 cut(s) 223, 225
BstKTI GATC 3 cut(s) 63, 113, 135
BstMBI GATC 3 cut(s) 60, 110, 132
BstSCI CCNGG 1 cut(s) 4
BstUI CGCG 1 cut(s) 223
BstV1I GCAGC 1 cut(s) 183
BstXI CCANNNNNNTGG 1 cut(s) 151
BtsCI GGATG 3 cut(s) 49, 260, 260
BveI ACCTGC 1 cut(s) 25
Cac8I GCNNGC 1 cut(s) 223
CfoI GCGC 2 cut(s) 223, 225
CseI GACGC 1 cut(s) 202
CviJI RGCY 1 cut(s) 10
CviKI_1 RGCY 1 cut(s) 10
DpnI GATC 3 cut(s) 62, 112, 134
DpnII GATC 3 cut(s) 60, 110, 132
Eam1104I CTCTTC 1 cut(s) 71
EarI CTCTTC 1 cut(s) 71
Eco24I GRGCYC 1 cut(s) 12
EcoT38I GRGCYC 1 cut(s) 12
FaqI GGGAC 2 cut(s) 35, 205
FbaI TGATCA 1 cut(s) 60
Fnu4HI GCNGC 1 cut(s) 197
FokI GGATG 3 cut(s) 56, 247, 267
FriOI GRGCYC 1 cut(s) 12
Fsp4HI GCNGC 1 cut(s) 197
GlaI GCGC 2 cut(s) 222, 224
GluI GCNGC 1 cut(s) 197
GsuI CTGGAG 1 cut(s) 221
HapII CCGG 3 cut(s) 5, 104, 171
HgaI GACGC 1 cut(s) 202
HhaI GCGC 2 cut(s) 223, 225
Hin6I GCGC 2 cut(s) 221, 223
HinP1I GCGC 2 cut(s) 221, 223
HinfI GANTC 2 cut(s) 165, 203
HpaII CCGG 3 cut(s) 5, 104, 171
HphI GGTGA 1 cut(s) 105
Hpy99I CGWCG 2 cut(s) 231, 234
HpyCH4V TGCA 1 cut(s) 34
HspAI GCGC 2 cut(s) 221, 223
Ksp22I TGATCA 1 cut(s) 60
Kzo9I GATC 3 cut(s) 60, 110, 132
LpnPI CCDG 9 cut(s) 3, 18, 20, 117, 137, 157, 184, 185, 251
Lsp1109I GCAGC 1 cut(s) 183
MalI GATC 3 cut(s) 62, 112, 134
MboI GATC 3 cut(s) 60, 110, 132
MboII GAAGA 1 cut(s) 88
MhlI GDGCHC 1 cut(s) 12
MlyI GAGTC 2 cut(s) 159, 212
MnlI CCTC 8 cut(s) 34, 66, 72, 76, 84, 169, 211, 234
MseI TTAA 1 cut(s) 271
MslI CAYNNNNRTG 1 cut(s) 29
MspA1I CMGCKG 1 cut(s) 66
MspI CCGG 3 cut(s) 5, 104, 171
MspR9I CCNGG 1 cut(s) 6
MvnI CGCG 1 cut(s) 223
NciI CCSGG 1 cut(s) 6
NdeII GATC 3 cut(s) 60, 110, 132
NlaIV GGNNCC 1 cut(s) 236
PalAI GGCGCGCC 1 cut(s) 221
PaqCI CACCTGC 1 cut(s) 25
PauI GCGCGC 1 cut(s) 221
PflMI CCANNNNNTGG 1 cut(s) 244
PkrI GCNGC 1 cut(s) 198
PleI GAGTC 2 cut(s) 159, 211
PpsI GAGTC 2 cut(s) 159, 211
PspN4I GGNNCC 1 cut(s) 236
PteI GCGCGC 1 cut(s) 221
RseI CAYNNNNRTG 1 cut(s) 29
SaqAI TTAA 1 cut(s) 271
SatI GCNGC 1 cut(s) 197
Sau3AI GATC 3 cut(s) 60, 110, 132
SchI GAGTC 2 cut(s) 159, 212
ScrFI CCNGG 1 cut(s) 6
SduI GDGCHC 1 cut(s) 12
SetI ASST 2 cut(s) 33, 39
SgsI GGCGCGCC 1 cut(s) 221
SmiMI CAYNNNNRTG 1 cut(s) 29
SmlI CTYRAG 1 cut(s) 11
SmoI CTYRAG 1 cut(s) 11
SsiI CCGC 1 cut(s) 66
StyD4I CCNGG 1 cut(s) 4
Tru1I TTAA 1 cut(s) 271
Tru9I TTAA 1 cut(s) 271
TseI GCWGC 1 cut(s) 196
TspGWI ACGGA 1 cut(s) 267
Van91I CCANNNNNTGG 1 cut(s) 244
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.