FvH4_2g09292

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000118
Physical Location & Seq
Forward (+)
8236408 .. 8236874
467 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g09292.t1

Sequence Viewer

Length: 279 bp
ATGGTCCTTAAAGTGCGGACGTCCCTCCGTTCTCCACCCTCCGGTGCCGACGACGGCTCGCCTCCATCCCAGAAGACTCCAGCAGCATCCTCGATCACTTTCTCTCACCGGGAGGGAAAGTGGTCGGGGACGCTGCTAGAGTCTTCTGGAGTGGAGGCGCGCCGTCGTCAGTGCCAGAGGGTGGAGAACAGAGGGATGTCCGCAGTTGGCTTAAAATACGGACGTCCGCTCTCAAACGGGCCTAGACGTCCATTACGTGAATCAGGCCAGTTGAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

93

Amino Acids

9.95

Weight (kDa)

11.36

Isoelectric Point (pI)

67.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000118)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01361 FvH4_1g07161 FvH4_1g07431 FvH4_1g07821 FvH4_1g08223 FvH4_1g10041 FvH4_1g12132 FvH4_1g15053 FvH4_1g18161 FvH4_1g18400 FvH4_1g18931 FvH4_1g19242 FvH4_1g19461 FvH4_1g20550 FvH4_1g21381 FvH4_1g21542 FvH4_1g22102 FvH4_1g23991 FvH4_1g24542 FvH4_1g24951 FvH4_1g24960 FvH4_1g25272 FvH4_1g25552 FvH4_1g25771 FvH4_1g28771 FvH4_1g29201 FvH4_1g29611 FvH4_2g01181 FvH4_2g02491 FvH4_2g04621 FvH4_2g04631 FvH4_2g07460 FvH4_2g08540 FvH4_2g08550 FvH4_2g09292 FvH4_2g10501 FvH4_2g12101 FvH4_2g12220 FvH4_2g12551 FvH4_2g14071 FvH4_2g14241 FvH4_2g15041 FvH4_2g15311 FvH4_2g18971 FvH4_2g19220 FvH4_2g19260 FvH4_2g19611 FvH4_2g19652 FvH4_2g20211 FvH4_2g20231 FvH4_2g21541 FvH4_2g22380 FvH4_2g27712 FvH4_2g28171 FvH4_2g29879 FvH4_2g32391 FvH4_3g02171 FvH4_3g05531 FvH4_3g09750 FvH4_3g10310 FvH4_3g10460 FvH4_3g13172 FvH4_3g15232 FvH4_3g18481 FvH4_3g18621 FvH4_3g20504 FvH4_3g20812 FvH4_3g22320 FvH4_3g22930 FvH4_3g22940 FvH4_3g23752 FvH4_3g24791 FvH4_3g26411 FvH4_3g26432 FvH4_3g27201 FvH4_3g27862 FvH4_3g28871 FvH4_3g28954 FvH4_3g29131 FvH4_3g29832 FvH4_3g29922 FvH4_3g30190 FvH4_3g32231 FvH4_3g32250 FvH4_3g33460 FvH4_3g34670 FvH4_3g36982 FvH4_3g37001 FvH4_3g38252 FvH4_3g38772 FvH4_3g40141 FvH4_3g40181 FvH4_3g42521 FvH4_4g00090 FvH4_4g00290 FvH4_4g00301 FvH4_4g00530 FvH4_4g00823 FvH4_4g02300 FvH4_4g02450 FvH4_4g03360 FvH4_4g04481 FvH4_4g04761 FvH4_4g06301 FvH4_4g06630 FvH4_4g08312 FvH4_4g08552 FvH4_4g10053 FvH4_4g11971 FvH4_4g13211 FvH4_4g13511 FvH4_4g15351 FvH4_4g16360 FvH4_4g16601 FvH4_4g18462 FvH4_4g22911 FvH4_4g23221 FvH4_4g24301 FvH4_4g24721 FvH4_4g27905 FvH4_4g28971 FvH4_4g29540 FvH4_4g30720 FvH4_4g31521 FvH4_4g33371 FvH4_4g34111 FvH4_4g35740 FvH4_5g00131 FvH4_5g02530 FvH4_5g02550 FvH4_5g02560 FvH4_5g02580 FvH4_5g03783 FvH4_5g05681 FvH4_5g05681 FvH4_5g09371 FvH4_5g09381 FvH4_5g14611 FvH4_5g15341 FvH4_5g19801 FvH4_5g20110 FvH4_5g20911 FvH4_5g22230 FvH4_5g25751 FvH4_5g26070 FvH4_5g26471 FvH4_5g27072 FvH4_5g27471 FvH4_5g27471 FvH4_5g27998 FvH4_5g28291 FvH4_5g30951 FvH4_5g31082 FvH4_5g31890 FvH4_5g32251 FvH4_5g34112 FvH4_5g37184 FvH4_5g37993 FvH4_5g38271 FvH4_6g00153 FvH4_6g00640 FvH4_6g05921 FvH4_6g08591 FvH4_6g09511 FvH4_6g10331 FvH4_6g10401 FvH4_6g14161 FvH4_6g14171 FvH4_6g18481 FvH4_6g19721 FvH4_6g19980 FvH4_6g20104 FvH4_6g20112 FvH4_6g21261 FvH4_6g21651 FvH4_6g22051 FvH4_6g23141 FvH4_6g24822 FvH4_6g25082 FvH4_6g25391 FvH4_6g25560 FvH4_6g26350 FvH4_6g27031 FvH4_6g27810 FvH4_6g27971 FvH4_6g28331 FvH4_6g29391 FvH4_6g30781 FvH4_6g32221 FvH4_6g34680 FvH4_6g36181 FvH4_6g36551 FvH4_6g37491 FvH4_6g37663 FvH4_6g39590 FvH4_6g40582 FvH4_6g43843 FvH4_6g50551 FvH4_7g00240 FvH4_7g00731 FvH4_7g01031 FvH4_7g03301 FvH4_7g08180 FvH4_7g08180 FvH4_7g10631 FvH4_7g19710 FvH4_7g23892 FvH4_7g25280 FvH4_7g25551 FvH4_7g30121 FvH4_7g31931 FvH4_7g32672 FvH4_c21g00040 FvH4_c2g00053
prunus_persica Prupe.1G448800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322451 RchiOBHm_Chr5g0015171
rosa_laevigata RLG00000003077 RLG00000018186 RLG00000030343
rosa_multiflora Rmu_co8096726.1_g000001
rosa_roxburghii Rroxscaffold_157G00438380 Rroxscaffold_1G00001730 Rroxscaffold_3G00236310
rosa_rugosa Rorug02G0236500
rosa_samantha Rh4BG247300 Rh6BG286200 Rh6CG287300 Rh7DG257500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 3 cut(s) 23, 226, 250
AccB1I GGYRCC 1 cut(s) 44
AccB7I CCANNNNNTGG 1 cut(s) 181
AccBSI CCGCTC 1 cut(s) 229
AccII CGCG 1 cut(s) 160
AciI CCGC 3 cut(s) 16, 201, 227
AcyI GRCGYC 3 cut(s) 20, 223, 247
AfiI CCNNNNNNNGG 2 cut(s) 41, 181
AluBI AGCT 1 cut(s) 276
AluI AGCT 1 cut(s) 276
AoxI GGCC 2 cut(s) 239, 265
ApeKI GCWGC 2 cut(s) 83, 133
AscI GGCGCGCC 1 cut(s) 158
AspLEI GCGC 2 cut(s) 160, 162
AspS9I GGNCC 2 cut(s) 4, 239
AsuC2I CCSGG 1 cut(s) 110
AsuHPI GGTGA 1 cut(s) 98
AvaII GGWCC 1 cut(s) 4
BanI GGYRCC 1 cut(s) 44
BbsI GAAGAC 2 cut(s) 80, 135
BbvI GCAGC 2 cut(s) 95, 120
BccI CCATC 1 cut(s) 73
BceAI ACGGC 2 cut(s) 70, 147
BcgI CGANNNNNNTGC 2 cut(s) 72, 106
BcnI CCSGG 1 cut(s) 110
BfaI CTAG 2 cut(s) 137, 243
BisI GCNGC 2 cut(s) 84, 134
BlsI GCNGC 2 cut(s) 85, 135
Bme1390I CCNGG 1 cut(s) 110
Bme18I GGWCC 1 cut(s) 4
BmgT120I GGNCC 2 cut(s) 4, 239
BmiI GGNNCC 1 cut(s) 46
BmrFI CCNGG 1 cut(s) 110
BmsI GCATC 1 cut(s) 95
BpiI GAAGAC 2 cut(s) 80, 135
BpmI CTGGAG 2 cut(s) 63, 168
BpuMI CCSGG 1 cut(s) 110
BsaAI YACGTR 1 cut(s) 257
BsaHI GRCGYC 3 cut(s) 20, 223, 247
BsaWI WCCGGW 1 cut(s) 41
BsaXI ACNNNNNCTCC 2 cut(s) 104, 134
Bsc4I CCNNNNNNNGG 2 cut(s) 41, 181
Bse1I ACTGG 1 cut(s) 268
BseGI GGATG 3 cut(s) 65, 86, 201
BseLI CCNNNNNNNGG 2 cut(s) 41, 181
BseNI ACTGG 1 cut(s) 268
BsePI GCGCGC 1 cut(s) 158
BseXI GCAGC 2 cut(s) 95, 120
Bsh1236I CGCG 1 cut(s) 160
BshFI GGCC 2 cut(s) 241, 267
BshNI GGYRCC 1 cut(s) 44
BsiSI CCGG 2 cut(s) 42, 109
BslFI GGGAC 2 cut(s) 7, 142
BslI CCNNNNNNNGG 2 cut(s) 41, 181
BsmFI GGGAC 2 cut(s) 7, 142
BsnI GGCC 2 cut(s) 241, 267
Bsp143I GATC 1 cut(s) 93
BspACI CCGC 3 cut(s) 16, 201, 227
BspANI GGCC 2 cut(s) 241, 267
BspFNI CGCG 1 cut(s) 160
BspLI GGNNCC 1 cut(s) 46
BspT107I GGYRCC 1 cut(s) 44
BsrBI CCGCTC 1 cut(s) 229
BsrI ACTGG 1 cut(s) 268
BssHII GCGCGC 1 cut(s) 158
BssMI GATC 1 cut(s) 93
BssNI GRCGYC 3 cut(s) 20, 223, 247
BstACI GRCGYC 3 cut(s) 20, 223, 247
BstBAI YACGTR 1 cut(s) 257
BstC8I GCNNGC 2 cut(s) 59, 160
BstF5I GGATG 3 cut(s) 65, 86, 201
BstFNI CGCG 1 cut(s) 160
BstHHI GCGC 2 cut(s) 160, 162
BstKTI GATC 1 cut(s) 96
BstMBI GATC 1 cut(s) 93
BstMWI GCNNNNNNNGC 1 cut(s) 273
BstSCI CCNGG 1 cut(s) 108
BstUI CGCG 1 cut(s) 160
BstV1I GCAGC 2 cut(s) 95, 120
BstV2I GAAGAC 2 cut(s) 80, 135
BsuRI GGCC 2 cut(s) 241, 267
BtsCI GGATG 3 cut(s) 65, 86, 201
BtsIMutI CAGTG 1 cut(s) 176
Cac8I GCNNGC 2 cut(s) 59, 160
CfoI GCGC 2 cut(s) 160, 162
Cfr13I GGNCC 2 cut(s) 4, 239
CseI GACGC 1 cut(s) 139
CviJI RGCY 5 cut(s) 57, 210, 241, 267, 276
CviKI_1 RGCY 5 cut(s) 57, 210, 241, 267, 276
DpnI GATC 1 cut(s) 95
DpnII GATC 1 cut(s) 93
Eco47I GGWCC 1 cut(s) 4
FaqI GGGAC 2 cut(s) 7, 142
Fnu4HI GCNGC 2 cut(s) 84, 134
FokI GGATG 3 cut(s) 52, 73, 208
Fsp4HI GCNGC 2 cut(s) 84, 134
FspBI CTAG 2 cut(s) 137, 243
GlaI GCGC 2 cut(s) 159, 161
GluI GCNGC 2 cut(s) 84, 134
GsuI CTGGAG 2 cut(s) 63, 168
HaeIII GGCC 2 cut(s) 241, 267
HapII CCGG 2 cut(s) 42, 109
HgaI GACGC 1 cut(s) 139
HhaI GCGC 2 cut(s) 160, 162
Hin1I GRCGYC 3 cut(s) 20, 223, 247
Hin6I GCGC 2 cut(s) 158, 160
HinP1I GCGC 2 cut(s) 158, 160
HinfI GANTC 3 cut(s) 76, 140, 260
HpaII CCGG 2 cut(s) 42, 109
HphI GGTGA 1 cut(s) 98
Hpy188III TCNNGA 1 cut(s) 147
Hpy99I CGWCG 3 cut(s) 53, 56, 168
HpyCH4IV ACGT 4 cut(s) 20, 223, 247, 256
HpyF10VI GCNNNNNNNGC 1 cut(s) 273
HpySE526I ACGT 4 cut(s) 20, 223, 247, 256
Hsp92I GRCGYC 3 cut(s) 20, 223, 247
HspAI GCGC 2 cut(s) 158, 160
Kzo9I GATC 1 cut(s) 93
LpnPI CCDG 7 cut(s) 55, 83, 93, 122, 132, 188, 249
Lsp1109I GCAGC 2 cut(s) 95, 120
LweI GCATC 1 cut(s) 95
MaeI CTAG 2 cut(s) 137, 243
MaeII ACGT 4 cut(s) 20, 223, 247, 256
MalI GATC 1 cut(s) 95
MbiI CCGCTC 1 cut(s) 229
MboI GATC 1 cut(s) 93
MboII GAAGA 2 cut(s) 85, 135
MlyI GAGTC 2 cut(s) 70, 149
MnlI CCTC 8 cut(s) 35, 49, 72, 100, 106, 148, 171, 185
MseI TTAA 2 cut(s) 9, 212
MspI CCGG 2 cut(s) 42, 109
MspR9I CCNGG 1 cut(s) 110
MvnI CGCG 1 cut(s) 160
MwoI GCNNNNNNNGC 1 cut(s) 273
NciI CCSGG 1 cut(s) 110
NdeII GATC 1 cut(s) 93
NlaIV GGNNCC 1 cut(s) 46
PalAI GGCGCGCC 1 cut(s) 158
PauI GCGCGC 1 cut(s) 158
PcsI WCGNNNNNNNCGW 1 cut(s) 253
PfeI GAWTC 1 cut(s) 260
PflMI CCANNNNNTGG 1 cut(s) 181
PkrI GCNGC 2 cut(s) 85, 135
PleI GAGTC 2 cut(s) 70, 148
PpsI GAGTC 2 cut(s) 70, 148
Ppu21I YACGTR 1 cut(s) 257
PspN4I GGNNCC 1 cut(s) 46
PspPI GGNCC 2 cut(s) 4, 239
PteI GCGCGC 1 cut(s) 158
SaqAI TTAA 2 cut(s) 9, 212
SatI GCNGC 2 cut(s) 84, 134
Sau3AI GATC 1 cut(s) 93
Sau96I GGNCC 2 cut(s) 4, 239
SchI GAGTC 2 cut(s) 70, 149
ScrFI CCNGG 1 cut(s) 110
SetI ASST 5 cut(s) 23, 226, 250, 259, 278
SfaNI GCATC 1 cut(s) 95
SgsI GGCGCGCC 1 cut(s) 158
SinI GGWCC 1 cut(s) 4
SsiI CCGC 3 cut(s) 16, 201, 227
SspMI CTAG 2 cut(s) 137, 243
StyD4I CCNGG 1 cut(s) 108
TaiI ACGT 4 cut(s) 23, 226, 250, 259
TaqI TCGA 1 cut(s) 92
TfiI GAWTC 1 cut(s) 260
Tru1I TTAA 2 cut(s) 9, 212
Tru9I TTAA 2 cut(s) 9, 212
TscAI CASTG 1 cut(s) 176
TseI GCWGC 2 cut(s) 83, 133
TspGWI ACGGA 2 cut(s) 17, 234
TspRI CASTG 1 cut(s) 176
Van91I CCANNNNNTGG 1 cut(s) 181
VpaK11BI GGWCC 1 cut(s) 4
XspI CTAG 2 cut(s) 137, 243
ZraI GACGTC 3 cut(s) 21, 224, 248
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.