FvH4_1g10041

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000118
Physical Location & Seq
Forward (+)
5452149 .. 5453962
1814 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g10041.t1

Sequence Viewer

Length: 612 bp
ATGGAAGCTTTGTCAATCAACCCTCAATTGCATTCATATCACTATAATTATGCATCAGATGTTGATTATGCAAAGACGCCTAAGACACGGAGCGGCTTCATGCCTTCATGTTTTAGAGCCCCCTTAATTCCTCTCACGTCCTTCCATTCTCCACCGTACAGCTCCGACGACGACGCCTCCACCCTAGCGGCCTCCAGCAGCGTCCCTAATCACTTTCTCTCCCCGGGTGGAGACGCGCCGTCGTCGGAGCTGTACGGTGGAGAACGGAGGGACGTCCGCACTTTAAGGGTTGTGCGCACGTCCTCTTTGGAACGGCTCTCTAACACTTGTGTTGTCATCGCCGCACCTCACCACTACATCATCGGTCAACTATTGTCGTTGAAGAGGCAGCCCAATTCGAAAGCTCTCATGGGAACCCTAACCATTGCTTGGGGTTTCAAGAACCGGTTTCTCTTGAGGGCAGAAGAAGACCGCTTCACCCTCTCGTTTAACCTCGAGGAGGATCGAAAACATGTAGTCGATGGCACATGGTTTTACGGCATGAATCTGTTAGTCGTGGCTCCTATGACTGATTATGTTCGACTGCTCAAGTTCCTAGTCAGAATTTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

204

Amino Acids

22.83

Weight (kDa)

8.89

Isoelectric Point (pI)

48.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4283 PF14111 118 - 193 3.9e-06 Domain of unknown function (DUF4283)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000118)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01361 FvH4_1g07161 FvH4_1g07431 FvH4_1g07821 FvH4_1g08223 FvH4_1g10041 FvH4_1g12132 FvH4_1g15053 FvH4_1g18161 FvH4_1g18400 FvH4_1g18931 FvH4_1g19242 FvH4_1g19461 FvH4_1g20550 FvH4_1g21381 FvH4_1g21542 FvH4_1g22102 FvH4_1g23991 FvH4_1g24542 FvH4_1g24951 FvH4_1g24960 FvH4_1g25272 FvH4_1g25552 FvH4_1g25771 FvH4_1g28771 FvH4_1g29201 FvH4_1g29611 FvH4_2g01181 FvH4_2g02491 FvH4_2g04621 FvH4_2g04631 FvH4_2g07460 FvH4_2g08540 FvH4_2g08550 FvH4_2g09292 FvH4_2g10501 FvH4_2g12101 FvH4_2g12220 FvH4_2g12551 FvH4_2g14071 FvH4_2g14241 FvH4_2g15041 FvH4_2g15311 FvH4_2g18971 FvH4_2g19220 FvH4_2g19260 FvH4_2g19611 FvH4_2g19652 FvH4_2g20211 FvH4_2g20231 FvH4_2g21541 FvH4_2g22380 FvH4_2g27712 FvH4_2g28171 FvH4_2g29879 FvH4_2g32391 FvH4_3g02171 FvH4_3g05531 FvH4_3g09750 FvH4_3g10310 FvH4_3g10460 FvH4_3g13172 FvH4_3g15232 FvH4_3g18481 FvH4_3g18621 FvH4_3g20504 FvH4_3g20812 FvH4_3g22320 FvH4_3g22930 FvH4_3g22940 FvH4_3g23752 FvH4_3g24791 FvH4_3g26411 FvH4_3g26432 FvH4_3g27201 FvH4_3g27862 FvH4_3g28871 FvH4_3g28954 FvH4_3g29131 FvH4_3g29832 FvH4_3g29922 FvH4_3g30190 FvH4_3g32231 FvH4_3g32250 FvH4_3g33460 FvH4_3g34670 FvH4_3g36982 FvH4_3g37001 FvH4_3g38252 FvH4_3g38772 FvH4_3g40141 FvH4_3g40181 FvH4_3g42521 FvH4_4g00090 FvH4_4g00290 FvH4_4g00301 FvH4_4g00530 FvH4_4g00823 FvH4_4g02300 FvH4_4g02450 FvH4_4g03360 FvH4_4g04481 FvH4_4g04761 FvH4_4g06301 FvH4_4g06630 FvH4_4g08312 FvH4_4g08552 FvH4_4g10053 FvH4_4g11971 FvH4_4g13211 FvH4_4g13511 FvH4_4g15351 FvH4_4g16360 FvH4_4g16601 FvH4_4g18462 FvH4_4g22911 FvH4_4g23221 FvH4_4g24301 FvH4_4g24721 FvH4_4g27905 FvH4_4g28971 FvH4_4g29540 FvH4_4g30720 FvH4_4g31521 FvH4_4g33371 FvH4_4g34111 FvH4_4g35740 FvH4_5g00131 FvH4_5g02530 FvH4_5g02550 FvH4_5g02560 FvH4_5g02580 FvH4_5g03783 FvH4_5g05681 FvH4_5g05681 FvH4_5g09371 FvH4_5g09381 FvH4_5g14611 FvH4_5g15341 FvH4_5g19801 FvH4_5g20110 FvH4_5g20911 FvH4_5g22230 FvH4_5g25751 FvH4_5g26070 FvH4_5g26471 FvH4_5g27072 FvH4_5g27471 FvH4_5g27471 FvH4_5g27998 FvH4_5g28291 FvH4_5g30951 FvH4_5g31082 FvH4_5g31890 FvH4_5g32251 FvH4_5g34112 FvH4_5g37184 FvH4_5g37993 FvH4_5g38271 FvH4_6g00153 FvH4_6g00640 FvH4_6g05921 FvH4_6g08591 FvH4_6g09511 FvH4_6g10331 FvH4_6g10401 FvH4_6g14161 FvH4_6g14171 FvH4_6g18481 FvH4_6g19721 FvH4_6g19980 FvH4_6g20104 FvH4_6g20112 FvH4_6g21261 FvH4_6g21651 FvH4_6g22051 FvH4_6g23141 FvH4_6g24822 FvH4_6g25082 FvH4_6g25391 FvH4_6g25560 FvH4_6g26350 FvH4_6g27031 FvH4_6g27810 FvH4_6g27971 FvH4_6g28331 FvH4_6g29391 FvH4_6g30781 FvH4_6g32221 FvH4_6g34680 FvH4_6g36181 FvH4_6g36551 FvH4_6g37491 FvH4_6g37663 FvH4_6g39590 FvH4_6g40582 FvH4_6g43843 FvH4_6g50551 FvH4_7g00240 FvH4_7g00731 FvH4_7g01031 FvH4_7g03301 FvH4_7g08180 FvH4_7g08180 FvH4_7g10631 FvH4_7g19710 FvH4_7g23892 FvH4_7g25280 FvH4_7g25551 FvH4_7g30121 FvH4_7g31931 FvH4_7g32672 FvH4_c21g00040 FvH4_c2g00053
prunus_persica Prupe.1G448800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322451 RchiOBHm_Chr5g0015171
rosa_laevigata RLG00000003077 RLG00000018186 RLG00000030343
rosa_multiflora Rmu_co8096726.1_g000001
rosa_roxburghii Rroxscaffold_157G00438380 Rroxscaffold_1G00001730 Rroxscaffold_3G00236310
rosa_rugosa Rorug02G0236500
rosa_samantha Rh4BG247300 Rh6BG286200 Rh6CG287300 Rh7DG257500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 276
AbsI CCTCGAGG 1 cut(s) 494
Acc16I TGCGCA 1 cut(s) 296
AccB7I CCANNNNNTGG 1 cut(s) 429
AccBSI CCGCTC 1 cut(s) 93
AccII CGCG 1 cut(s) 236
AciI CCGC 5 cut(s) 93, 188, 277, 342, 472
AclWI GGATC 1 cut(s) 510
AcsI RAATTY 1 cut(s) 603
AcyI GRCGYC 3 cut(s) 77, 174, 273
AfaI GTAC 2 cut(s) 158, 254
AfiI CCNNNNNNNGG 2 cut(s) 429, 499
AflIII ACRYGT 1 cut(s) 511
AgeI ACCGGT 1 cut(s) 444
AgsI TTSAA 2 cut(s) 382, 439
AhdI GACNNNNNGTC 1 cut(s) 238
AjiI CACGTC 2 cut(s) 138, 300
AluBI AGCT 4 cut(s) 8, 162, 250, 404
AluI AGCT 4 cut(s) 8, 162, 250, 404
Alw26I GTCTC 1 cut(s) 225
AlwI GGATC 1 cut(s) 510
Ama87I CYCGRG 2 cut(s) 223, 494
AoxI GGCC 1 cut(s) 189
ApeKI GCWGC 2 cut(s) 198, 388
ApoI RAATTY 1 cut(s) 603
AsiGI ACCGGT 1 cut(s) 444
AspLEI GCGC 2 cut(s) 238, 297
AsuC2I CCSGG 2 cut(s) 224, 225
AsuHPI GGTGA 2 cut(s) 341, 469
AsuII TTCGAA 1 cut(s) 398
AvaI CYCGRG 2 cut(s) 223, 494
BanII GRGCYC 1 cut(s) 121
BbsI GAAGAC 1 cut(s) 474
BbvI GCAGC 2 cut(s) 210, 400
BccI CCATC 1 cut(s) 515
BceAI ACGGC 3 cut(s) 223, 329, 553
BcnI CCSGG 2 cut(s) 224, 225
BcoDI GTCTC 1 cut(s) 225
BfaI CTAG 3 cut(s) 185, 596, 610
BisI GCNGC 5 cut(s) 94, 189, 199, 342, 389
BlsI GCNGC 5 cut(s) 95, 190, 200, 343, 390
Bme1390I CCNGG 2 cut(s) 224, 225
BmeRI GACNNNNNGTC 1 cut(s) 238
BmeT110I CYCGRG 2 cut(s) 223, 494
BmgBI CACGTC 2 cut(s) 138, 300
BmiI GGNNCC 2 cut(s) 415, 561
BmrFI CCNGG 2 cut(s) 224, 225
BmsI GCATC 1 cut(s) 62
BpiI GAAGAC 1 cut(s) 474
BpmI CTGGAG 1 cut(s) 178
Bpu14I TTCGAA 1 cut(s) 398
BpuEI CTTGAG 2 cut(s) 475, 572
BpuMI CCSGG 2 cut(s) 224, 225
BsaHI GRCGYC 3 cut(s) 77, 174, 273
BsaJI CCNNGG 2 cut(s) 222, 223
BsaWI WCCGGW 1 cut(s) 444
BsaXI ACNNNNNCTCC 4 cut(s) 161, 191, 203, 233
Bsc4I CCNNNNNNNGG 2 cut(s) 429, 499
Bse118I RCCGGY 1 cut(s) 444
Bse3DI GCAATG 1 cut(s) 423
BseDI CCNNGG 2 cut(s) 222, 223
BseLI CCNNNNNNNGG 2 cut(s) 429, 499
BseMI GCAATG 1 cut(s) 423
BseRI GAGGAG 1 cut(s) 512
BseXI GCAGC 2 cut(s) 210, 400
Bsh1236I CGCG 1 cut(s) 236
BshFI GGCC 1 cut(s) 191
BshTI ACCGGT 1 cut(s) 444
BsiHKCI CYCGRG 2 cut(s) 223, 494
BsiSI CCGG 2 cut(s) 224, 445
BslFI GGGAC 2 cut(s) 188, 284
BslI CCNNNNNNNGG 2 cut(s) 429, 499
BsmAI GTCTC 1 cut(s) 225
BsmBI CGTCTC 1 cut(s) 225
BsmFI GGGAC 2 cut(s) 188, 284
BsmI GAATGC 1 cut(s) 31
BsnI GGCC 1 cut(s) 191
BsoBI CYCGRG 2 cut(s) 223, 494
Bsp119I TTCGAA 1 cut(s) 398
Bsp1286I GDGCHC 1 cut(s) 121
Bsp143I GATC 1 cut(s) 502
BspACI CCGC 5 cut(s) 93, 188, 277, 342, 472
BspANI GGCC 1 cut(s) 191
BspFNI CGCG 1 cut(s) 236
BspLI GGNNCC 2 cut(s) 415, 561
BspPI GGATC 1 cut(s) 510
BspT104I TTCGAA 1 cut(s) 398
BsrBI CCGCTC 1 cut(s) 93
BsrDI GCAATG 1 cut(s) 423
BsrFI RCCGGY 1 cut(s) 444
BssAI RCCGGY 1 cut(s) 444
BssECI CCNNGG 2 cut(s) 222, 223
BssMI GATC 1 cut(s) 502
BssNI GRCGYC 3 cut(s) 77, 174, 273
Bst4CI ACNGT 2 cut(s) 156, 257
Bst6I CTCTTC 1 cut(s) 377
BstACI GRCGYC 3 cut(s) 77, 174, 273
BstBI TTCGAA 1 cut(s) 398
BstDEI CTNAG 1 cut(s) 81
BstENI CCTNNNNNAGG 1 cut(s) 497
BstFNI CGCG 1 cut(s) 236
BstHHI GCGC 2 cut(s) 238, 297
BstKTI GATC 1 cut(s) 505
BstMAI GTCTC 1 cut(s) 225
BstMBI GATC 1 cut(s) 502
BstNSI RCATGY 1 cut(s) 515
BstSCI CCNGG 2 cut(s) 222, 223
BstUI CGCG 1 cut(s) 236
BstV1I GCAGC 2 cut(s) 210, 400
BstV2I GAAGAC 1 cut(s) 474
BsuRI GGCC 1 cut(s) 191
BtgZI GCGATG 1 cut(s) 322
BtrI CACGTC 2 cut(s) 138, 300
CfoI GCGC 2 cut(s) 238, 297
Cfr10I RCCGGY 1 cut(s) 444
Cfr9I CCCGGG 1 cut(s) 223
CseI GACGC 4 cut(s) 85, 182, 190, 242
Csp6I GTAC 2 cut(s) 157, 253
CspAI ACCGGT 1 cut(s) 444
CviAII CATG 6 cut(s) 100, 108, 409, 512, 528, 541
CviQI GTAC 2 cut(s) 157, 253
DdeI CTNAG 1 cut(s) 81
DpnI GATC 1 cut(s) 504
DpnII GATC 1 cut(s) 502
DriI GACNNNNNGTC 1 cut(s) 238
Eam1104I CTCTTC 1 cut(s) 377
Eam1105I GACNNNNNGTC 1 cut(s) 238
EarI CTCTTC 1 cut(s) 377
Eco24I GRGCYC 1 cut(s) 121
Eco88I CYCGRG 2 cut(s) 223, 494
EcoNI CCTNNNNNAGG 1 cut(s) 497
EcoT22I ATGCAT 1 cut(s) 55
EcoT38I GRGCYC 1 cut(s) 121
Esp3I CGTCTC 1 cut(s) 225
FaeI CATG 6 cut(s) 103, 111, 412, 515, 531, 544
FaqI GGGAC 2 cut(s) 188, 284
FatI CATG 6 cut(s) 99, 107, 408, 511, 527, 540
Fnu4HI GCNGC 5 cut(s) 94, 189, 199, 342, 389
FriOI GRGCYC 1 cut(s) 121
Fsp4HI GCNGC 5 cut(s) 94, 189, 199, 342, 389
FspAI RTGCGCAY 1 cut(s) 296
FspBI CTAG 3 cut(s) 185, 596, 610
FspI TGCGCA 1 cut(s) 296
GlaI GCGC 2 cut(s) 237, 296
GluI GCNGC 5 cut(s) 94, 189, 199, 342, 389
GsuI CTGGAG 1 cut(s) 178
HaeIII GGCC 1 cut(s) 191
HapII CCGG 2 cut(s) 224, 445
HgaI GACGC 4 cut(s) 85, 182, 190, 242
HhaI GCGC 2 cut(s) 238, 297
Hin1I GRCGYC 3 cut(s) 77, 174, 273
Hin1II CATG 6 cut(s) 103, 111, 412, 515, 531, 544
Hin6I GCGC 2 cut(s) 236, 295
HinP1I GCGC 2 cut(s) 236, 295
HincII GTYRAC 1 cut(s) 368
HindII GTYRAC 1 cut(s) 368
HindIII AAGCTT 1 cut(s) 6
HinfI GANTC 1 cut(s) 544
HpaII CCGG 2 cut(s) 224, 445
HphI GGTGA 2 cut(s) 341, 469
Hpy166II GTNNAC 1 cut(s) 368
Hpy188I TCNGA 4 cut(s) 58, 166, 247, 602
Hpy188III TCNNGA 2 cut(s) 439, 454
Hpy8I GTNNAC 1 cut(s) 368
Hpy99I CGWCG 5 cut(s) 170, 173, 176, 244, 247
HpyAV CCTTC 2 cut(s) 114, 151
HpyCH4III ACNGT 2 cut(s) 156, 257
HpyCH4IV ACGT 3 cut(s) 137, 273, 299
HpyCH4V TGCA 3 cut(s) 31, 53, 71
HpyF3I CTNAG 1 cut(s) 81
HpySE526I ACGT 3 cut(s) 137, 273, 299
Hsp92I GRCGYC 3 cut(s) 77, 174, 273
Hsp92II CATG 6 cut(s) 103, 111, 412, 515, 531, 544
HspAI GCGC 2 cut(s) 236, 295
Kzo9I GATC 1 cut(s) 502
LmnI GCTCC 4 cut(s) 90, 167, 247, 565
LpnPI CCDG 3 cut(s) 208, 237, 458
Lsp1109I GCAGC 2 cut(s) 210, 400
LweI GCATC 1 cut(s) 62
MaeI CTAG 3 cut(s) 185, 596, 610
MaeII ACGT 3 cut(s) 137, 273, 299
MalI GATC 1 cut(s) 504
MbiI CCGCTC 1 cut(s) 93
MboI GATC 1 cut(s) 502
MboII GAAGA 3 cut(s) 394, 476, 479
MfeI CAATTG 1 cut(s) 26
MhlI GDGCHC 1 cut(s) 121
MluCI AATT 5 cut(s) 26, 46, 126, 394, 603
MmeI TCCRAC 2 cut(s) 189, 225
Mph1103I ATGCAT 1 cut(s) 55
MseI TTAA 3 cut(s) 125, 284, 489
MspI CCGG 2 cut(s) 224, 445
MspR9I CCNGG 2 cut(s) 224, 225
MunI CAATTG 1 cut(s) 26
Mva1269I GAATGC 1 cut(s) 31
MvnI CGCG 1 cut(s) 236
NciI CCSGG 2 cut(s) 224, 225
NdeII GATC 1 cut(s) 502
NlaIII CATG 6 cut(s) 103, 111, 412, 515, 531, 544
NlaIV GGNNCC 2 cut(s) 415, 561
NsbI TGCGCA 1 cut(s) 296
NsiI ATGCAT 1 cut(s) 55
NspI RCATGY 1 cut(s) 515
NspV TTCGAA 1 cut(s) 398
PaeR7I CTCGAG 1 cut(s) 494
PciI ACATGT 1 cut(s) 511
PctI GAATGC 1 cut(s) 31
PfeI GAWTC 1 cut(s) 544
PflMI CCANNNNNTGG 1 cut(s) 429
PinAI ACCGGT 1 cut(s) 444
PkrI GCNGC 5 cut(s) 95, 190, 200, 343, 390
PscI ACATGT 1 cut(s) 511
PspN4I GGNNCC 2 cut(s) 415, 561
PspXI VCTCGAGB 1 cut(s) 494
RsaI GTAC 2 cut(s) 158, 254
RsaNI GTAC 2 cut(s) 157, 253
SaqAI TTAA 3 cut(s) 125, 284, 489
SatI GCNGC 5 cut(s) 94, 189, 199, 342, 389
Sau3AI GATC 1 cut(s) 502
ScrFI CCNGG 2 cut(s) 224, 225
SduI GDGCHC 1 cut(s) 121
SetI ASST 9 cut(s) 10, 140, 164, 252, 276, 302, 349, 406, 495
SfaNI GCATC 1 cut(s) 62
Sfr274I CTCGAG 1 cut(s) 494
SfuI TTCGAA 1 cut(s) 398
SlaI CTCGAG 1 cut(s) 494
SmaI CCCGGG 1 cut(s) 225
SmlI CTYRAG 3 cut(s) 454, 494, 587
SmoI CTYRAG 3 cut(s) 454, 494, 587
Sse9I AATT 5 cut(s) 26, 46, 126, 394, 603
SsiI CCGC 5 cut(s) 93, 188, 277, 342, 472
SspMI CTAG 3 cut(s) 185, 596, 610
StyD4I CCNGG 2 cut(s) 222, 223
TaaI ACNGT 2 cut(s) 156, 257
TaiI ACGT 3 cut(s) 140, 276, 302
TaqI TCGA 5 cut(s) 398, 495, 505, 519, 580
TaqII GACCGA 1 cut(s) 353
TasI AATT 5 cut(s) 26, 46, 126, 394, 603
TauI GCSGC 3 cut(s) 96, 191, 344
TfiI GAWTC 1 cut(s) 544
Tru1I TTAA 3 cut(s) 125, 284, 489
Tru9I TTAA 3 cut(s) 125, 284, 489
TseI GCWGC 2 cut(s) 198, 388
TspDTI ATGAA 4 cut(s) 24, 88, 96, 557
TspGWI ACGGA 2 cut(s) 103, 280
TspMI CCCGGG 1 cut(s) 223
Van91I CCANNNNNTGG 1 cut(s) 429
XagI CCTNNNNNAGG 1 cut(s) 497
XapI RAATTY 1 cut(s) 603
XceI RCATGY 1 cut(s) 515
XhoI CTCGAG 1 cut(s) 494
XmaI CCCGGG 1 cut(s) 223
XspI CTAG 3 cut(s) 185, 596, 610
ZraI GACGTC 1 cut(s) 274
Zsp2I ATGCAT 1 cut(s) 55
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.