Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0000118

Physical Location & Seq

Genomic Coordinates Reverse (-)

9968171 .. 9971225

Gene Structure 3055 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g10631.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGCCTCTCCTCTTGTCGTATGACAGCAGAGGCATCCCCTACGACTTGACCATGAAAAGGAAGGACATGGAGATCAAATTTGAAGGTCTAGGCAGCAATTTCCACCCAAAACTTCAGATAAGAACAATAGCGATTGCAAACTGGTATATGGCGAGTCCACCGGCAAGAGGAAGGTCACAATCGAGGTCTGGTGTCCGCTCGGCAAGAAGAGAGGCGTCGCTGGCGCCGGCGCCGGCGCCGGACAGTGTAGAATGGAGAGACATCCTTAAGGGCGGTGAGGATAAACCCCTAGCACAACAGAACACTATCAAGCTTGAGCTGACCCGAAAGTTGGGATTTTCAGGGGAGATCAAGAGAAATCTATTTCGTAAACATAATCCTACTCGCATGCCCGTCAAGACCAACTCACACTCGCTTGCTGTGAAGCACACACATGTCCAGTTTTTCAATCAGCAATTGCCCTCGGAGAGGCACGAAATTACGGAGATGGGATTGGGTTGGACATGTTTCGGGTTCCGTGTTGGGCAGAGGGAAGGGGAGGGAAGGAGCACAGTCCAAAGAGGTGACAGAGAGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006996 GO:0008150 GO:0009987 GO:0015935 GO:0016043 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0032991 GO:0034622 GO:0042254 GO:0042255 GO:0042274 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043933 GO:0044085 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0065003 GO:0070925 GO:0071826 GO:0071840 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S19

Protein Analysis

193

Amino Acids

21.9

Weight (kDa)

10.26

Isoelectric Point (pI)

55.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000118)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g01361 FvH4_1g07161 FvH4_1g07431 FvH4_1g07821 FvH4_1g08223 FvH4_1g10041 FvH4_1g12132 FvH4_1g15053 FvH4_1g18161 FvH4_1g18400 FvH4_1g18931 FvH4_1g19242 FvH4_1g19461 FvH4_1g20550 FvH4_1g21381 FvH4_1g21542 FvH4_1g22102 FvH4_1g23991 FvH4_1g24542 FvH4_1g24951 FvH4_1g24960 FvH4_1g25272 FvH4_1g25552 FvH4_1g25771 FvH4_1g28771 FvH4_1g29201 FvH4_1g29611 FvH4_2g01181 FvH4_2g02491 FvH4_2g04621 FvH4_2g04631 FvH4_2g07460 FvH4_2g08540 FvH4_2g08550 FvH4_2g09292 FvH4_2g10501 FvH4_2g12101 FvH4_2g12220 FvH4_2g12551 FvH4_2g14071 FvH4_2g14241 FvH4_2g15041 FvH4_2g15311 FvH4_2g18971 FvH4_2g19220 FvH4_2g19260 FvH4_2g19611 FvH4_2g19652 FvH4_2g20211 FvH4_2g20231 FvH4_2g21541 FvH4_2g22380 FvH4_2g27712 FvH4_2g28171 FvH4_2g29879 FvH4_2g32391 FvH4_3g02171 FvH4_3g05531 FvH4_3g09750 FvH4_3g10310 FvH4_3g10460 FvH4_3g13172 FvH4_3g15232 FvH4_3g18481 FvH4_3g18621 FvH4_3g20504 FvH4_3g20812 FvH4_3g22320 FvH4_3g22930 FvH4_3g22940 FvH4_3g23752 FvH4_3g24791 FvH4_3g26411 FvH4_3g26432 FvH4_3g27201 FvH4_3g27862 FvH4_3g28871 FvH4_3g28954 FvH4_3g29131 FvH4_3g29832 FvH4_3g29922 FvH4_3g30190 FvH4_3g32231 FvH4_3g32250 FvH4_3g33460 FvH4_3g34670 FvH4_3g36982 FvH4_3g37001 FvH4_3g38252 FvH4_3g38772 FvH4_3g40141 FvH4_3g40181 FvH4_3g42521 FvH4_4g00090 FvH4_4g00290 FvH4_4g00301 FvH4_4g00530 FvH4_4g00823 FvH4_4g02300 FvH4_4g02450 FvH4_4g03360 FvH4_4g04481 FvH4_4g04761 FvH4_4g06301 FvH4_4g06630 FvH4_4g08312 FvH4_4g08552 FvH4_4g10053 FvH4_4g11971 FvH4_4g13211 FvH4_4g13511 FvH4_4g15351 FvH4_4g16360 FvH4_4g16601 FvH4_4g18462 FvH4_4g22911 FvH4_4g23221 FvH4_4g24301 FvH4_4g24721 FvH4_4g27905 FvH4_4g28971 FvH4_4g29540 FvH4_4g30720 FvH4_4g31521 FvH4_4g33371 FvH4_4g34111 FvH4_4g35740 FvH4_5g00131 FvH4_5g02530 FvH4_5g02550 FvH4_5g02560 FvH4_5g02580 FvH4_5g03783 FvH4_5g05681 FvH4_5g05681 FvH4_5g09371 FvH4_5g09381 FvH4_5g14611 FvH4_5g15341 FvH4_5g19801 FvH4_5g20110 FvH4_5g20911 FvH4_5g22230 FvH4_5g25751 FvH4_5g26070 FvH4_5g26471 FvH4_5g27072 FvH4_5g27471 FvH4_5g27471 FvH4_5g27998 FvH4_5g28291 FvH4_5g30951 FvH4_5g31082 FvH4_5g31890 FvH4_5g32251 FvH4_5g34112 FvH4_5g37184 FvH4_5g37993 FvH4_5g38271 FvH4_6g00153 FvH4_6g00640 FvH4_6g05921 FvH4_6g08591 FvH4_6g09511 FvH4_6g10331 FvH4_6g10401 FvH4_6g14161 FvH4_6g14171 FvH4_6g18481 FvH4_6g19721 FvH4_6g19980 FvH4_6g20104 FvH4_6g20112 FvH4_6g21261 FvH4_6g21651 FvH4_6g22051 FvH4_6g23141 FvH4_6g24822 FvH4_6g25082 FvH4_6g25391 FvH4_6g25560 FvH4_6g26350 FvH4_6g27031 FvH4_6g27810 FvH4_6g27971 FvH4_6g28331 FvH4_6g29391 FvH4_6g30781 FvH4_6g32221 FvH4_6g34680 FvH4_6g36181 FvH4_6g36551 FvH4_6g37491 FvH4_6g37663 FvH4_6g39590 FvH4_6g40582 FvH4_6g43843 FvH4_6g50551 FvH4_7g00240 FvH4_7g00731 FvH4_7g01031 FvH4_7g03301 FvH4_7g08180 FvH4_7g08180 FvH4_7g10631 FvH4_7g19710 FvH4_7g23892 FvH4_7g25280 FvH4_7g25551 FvH4_7g30121 FvH4_7g31931 FvH4_7g32672 FvH4_c21g00040 FvH4_c2g00053
prunus_persica	Prupe.1G448800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0322451 RchiOBHm_Chr5g0015171
rosa_laevigata	RLG00000003077 RLG00000018186 RLG00000030343
rosa_multiflora	Rmu_co8096726.1_g000001
rosa_roxburghii	Rroxscaffold_157G00438380 Rroxscaffold_1G00001730 Rroxscaffold_3G00236310
rosa_rugosa	Rorug02G0236500
rosa_samantha	Rh4BG247300 Rh6BG286200 Rh6CG287300 Rh7DG257500

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	223, 229, 235
AccBSI	CCGCTC	1 cut(s)	198
AciI	CCGC	2 cut(s)	196, 273
AcsI	RAATTY	1 cut(s)	77
AcuI	CTGAAG	1 cut(s)	98
AcyI	GRCGYC	4 cut(s)	215, 224, 230, 236
AfiI	CCNNNNNNNGG	4 cut(s)	57, 167, 331, 468
AflII	CTTAAG	1 cut(s)	266
AflIII	ACRYGT	2 cut(s)	433, 503
AgsI	TTSAA	2 cut(s)	83, 448
AluBI	AGCT	2 cut(s)	313, 319
AluI	AGCT	2 cut(s)	313, 319
Alw21I	GWGCWC	1 cut(s)	551
Alw26I	GTCTC	1 cut(s)	252
ApeKI	GCWGC	1 cut(s)	93
ApoI	RAATTY	1 cut(s)	77
AspLEI	GCGC	3 cut(s)	226, 232, 238
AsuHPI	GGTGA	2 cut(s)	287, 575
BanI	GGYRCC	3 cut(s)	223, 229, 235
Bbv12I	GWGCWC	1 cut(s)	551
BbvI	GCAGC	1 cut(s)	105
BccI	CCATC	1 cut(s)	481
BcoDI	GTCTC	1 cut(s)	252
BfaI	CTAG	2 cut(s)	89, 290
BfoI	RGCGCY	3 cut(s)	227, 233, 239
BfrI	CTTAAG	1 cut(s)	266
BisI	GCNGC	1 cut(s)	94
BlsI	GCNGC	1 cut(s)	95
BmiI	GGNNCC	4 cut(s)	225, 231, 237, 515
BmsI	GCATC	1 cut(s)	42
BpuEI	CTTGAG	1 cut(s)	335
BsaHI	GRCGYC	4 cut(s)	215, 224, 230, 236
BsaJI	CCNNGG	1 cut(s)	462
Bsc4I	CCNNNNNNNGG	4 cut(s)	57, 167, 331, 468
Bse118I	RCCGGY	3 cut(s)	160, 226, 232
Bse1I	ACTGG	2 cut(s)	146, 439
BseDI	CCNNGG	1 cut(s)	462
BseGI	GGATG	2 cut(s)	33, 261
BseLI	CCNNNNNNNGG	4 cut(s)	57, 167, 331, 468
BseNI	ACTGG	2 cut(s)	146, 439
BseXI	GCAGC	1 cut(s)	105
BshNI	GGYRCC	3 cut(s)	223, 229, 235
BsiHKAI	GWGCWC	1 cut(s)	551
BsiSI	CCGG	4 cut(s)	161, 227, 233, 239
BslI	CCNNNNNNNGG	4 cut(s)	57, 167, 331, 468
BsmAI	GTCTC	1 cut(s)	252
Bsp1286I	GDGCHC	1 cut(s)	551
Bsp143I	GATC	2 cut(s)	72, 348
BspACI	CCGC	2 cut(s)	196, 273
BspLI	GGNNCC	4 cut(s)	225, 231, 237, 515
BspT107I	GGYRCC	3 cut(s)	223, 229, 235
BspTI	CTTAAG	1 cut(s)	266
BsrBI	CCGCTC	1 cut(s)	198
BsrFI	RCCGGY	3 cut(s)	160, 226, 232
BsrI	ACTGG	2 cut(s)	146, 439
BssAI	RCCGGY	3 cut(s)	160, 226, 232
BssECI	CCNNGG	1 cut(s)	462
BssMI	GATC	2 cut(s)	72, 348
BssNI	GRCGYC	4 cut(s)	215, 224, 230, 236
Bst4CI	ACNGT	2 cut(s)	245, 553
Bst6I	CTCTTC	1 cut(s)	202
BstACI	GRCGYC	4 cut(s)	215, 224, 230, 236
BstAFI	CTTAAG	1 cut(s)	266
BstC8I	GCNNGC	5 cut(s)	222, 228, 234, 389, 417
BstENI	CCTNNNNNAGG	1 cut(s)	466
BstF5I	GGATG	2 cut(s)	33, 261
BstH2I	RGCGCY	3 cut(s)	227, 233, 239
BstHHI	GCGC	3 cut(s)	226, 232, 238
BstKTI	GATC	2 cut(s)	75, 351
BstMAI	GTCTC	1 cut(s)	252
BstMBI	GATC	2 cut(s)	72, 348
BstMWI	GCNNNNNNNGC	1 cut(s)	221
BstNSI	RCATGY	3 cut(s)	391, 437, 507
BstV1I	GCAGC	1 cut(s)	105
BtsCI	GGATG	2 cut(s)	33, 261
BtsIMutI	CAGTG	1 cut(s)	250
Cac8I	GCNNGC	5 cut(s)	222, 228, 234, 389, 417
CfoI	GCGC	3 cut(s)	226, 232, 238
Cfr10I	RCCGGY	3 cut(s)	160, 226, 232
CseI	GACGC	1 cut(s)	204
CviAII	CATG	5 cut(s)	52, 67, 388, 434, 504
CviJI	RGCY	2 cut(s)	313, 319
CviKI_1	RGCY	2 cut(s)	313, 319
DinI	GGCGCC	3 cut(s)	225, 231, 237
DpnI	GATC	2 cut(s)	74, 350
DpnII	GATC	2 cut(s)	72, 348
Eam1104I	CTCTTC	1 cut(s)	202
EarI	CTCTTC	1 cut(s)	202
Eco57I	CTGAAG	1 cut(s)	98
EcoNI	CCTNNNNNAGG	1 cut(s)	466
EgeI	GGCGCC	3 cut(s)	225, 231, 237
EheI	GGCGCC	3 cut(s)	225, 231, 237
FaeI	CATG	5 cut(s)	55, 70, 391, 437, 507
FaiI	YATR	9 cut(s)	21, 53, 68, 147, 149, 375, 389, 435, 505
FatI	CATG	5 cut(s)	51, 66, 387, 433, 503
Fnu4HI	GCNGC	1 cut(s)	94
FokI	GGATG	2 cut(s)	20, 248
Fsp4HI	GCNGC	1 cut(s)	94
FspBI	CTAG	2 cut(s)	89, 290
GlaI	GCGC	3 cut(s)	225, 231, 237
GluI	GCNGC	1 cut(s)	94
HaeII	RGCGCY	3 cut(s)	227, 233, 239
HapII	CCGG	4 cut(s)	161, 227, 233, 239
HgaI	GACGC	1 cut(s)	204
HhaI	GCGC	3 cut(s)	226, 232, 238
Hin1I	GRCGYC	4 cut(s)	215, 224, 230, 236
Hin1II	CATG	5 cut(s)	55, 70, 391, 437, 507
Hin6I	GCGC	3 cut(s)	224, 230, 236
HinP1I	GCGC	3 cut(s)	224, 230, 236
HindIII	AAGCTT	1 cut(s)	311
HinfI	GANTC	1 cut(s)	154
HpaII	CCGG	4 cut(s)	161, 227, 233, 239
HphI	GGTGA	2 cut(s)	287, 575
Hpy166II	GTNNAC	2 cut(s)	158, 371
Hpy188I	TCNGA	2 cut(s)	117, 466
Hpy188III	TCNNGA	2 cut(s)	352, 397
Hpy8I	GTNNAC	2 cut(s)	158, 371
Hpy99I	CGWCG	1 cut(s)	220
HpyAV	CCTTC	5 cut(s)	55, 77, 165, 527, 537
HpyCH4III	ACNGT	2 cut(s)	245, 553
HpyCH4V	TGCA	1 cut(s)	137
HpyF10VI	GCNNNNNNNGC	1 cut(s)	221
Hsp92I	GRCGYC	4 cut(s)	215, 224, 230, 236
Hsp92II	CATG	5 cut(s)	55, 70, 391, 437, 507
HspAI	GCGC	3 cut(s)	224, 230, 236
KasI	GGCGCC	3 cut(s)	223, 229, 235
KroI	GCCGGC	2 cut(s)	226, 232
KroNI	GCCGGC	2 cut(s)	228, 234
Kzo9I	GATC	2 cut(s)	72, 348
LmnI	GCTCC	1 cut(s)	546
LpnPI	CCDG	9 cut(s)	127, 174, 174, 206, 240, 246, 252, 327, 452
Lsp1109I	GCAGC	1 cut(s)	105
LweI	GCATC	1 cut(s)	42
MaeI	CTAG	2 cut(s)	89, 290
MaeIII	GTNAC	2 cut(s)	174, 563
MalI	GATC	2 cut(s)	74, 350
MbiI	CCGCTC	1 cut(s)	198
MboI	GATC	2 cut(s)	72, 348
MboII	GAAGA	1 cut(s)	219
MfeI	CAATTG	1 cut(s)	455
MhlI	GDGCHC	1 cut(s)	551
MluCI	AATT	4 cut(s)	77, 97, 455, 477
Mly113I	GGCGCC	3 cut(s)	224, 230, 236
MlyI	GAGTC	1 cut(s)	163
MmeI	TCCRAC	1 cut(s)	479
MreI	CGCCGGCG	2 cut(s)	226, 232
MroNI	GCCGGC	2 cut(s)	226, 232
MseI	TTAA	1 cut(s)	267
MslI	CAYNNNNRTG	1 cut(s)	432
MspCI	CTTAAG	1 cut(s)	266
MspI	CCGG	4 cut(s)	161, 227, 233, 239
MunI	CAATTG	1 cut(s)	455
MwoI	GCNNNNNNNGC	1 cut(s)	221
NaeI	GCCGGC	2 cut(s)	228, 234
NarI	GGCGCC	3 cut(s)	224, 230, 236
NdeII	GATC	2 cut(s)	72, 348
NgoMIV	GCCGGC	2 cut(s)	226, 232
NlaIII	CATG	5 cut(s)	55, 70, 391, 437, 507
NlaIV	GGNNCC	4 cut(s)	225, 231, 237, 515
NmeAIII	GCCGAG	1 cut(s)	179
NmuCI	GTSAC	2 cut(s)	174, 563
NspI	RCATGY	3 cut(s)	391, 437, 507
PaeI	GCATGC	1 cut(s)	391
PciI	ACATGT	2 cut(s)	433, 503
PdiI	GCCGGC	2 cut(s)	228, 234
PkrI	GCNGC	1 cut(s)	95
PleI	GAGTC	1 cut(s)	162
PluTI	GGCGCC	3 cut(s)	227, 233, 239
PpsI	GAGTC	1 cut(s)	162
PscI	ACATGT	2 cut(s)	433, 503
PspN4I	GGNNCC	4 cut(s)	225, 231, 237, 515
RseI	CAYNNNNRTG	1 cut(s)	432
SaqAI	TTAA	1 cut(s)	267
SatI	GCNGC	1 cut(s)	94
Sau3AI	GATC	2 cut(s)	72, 348
SchI	GAGTC	1 cut(s)	163
SduI	GDGCHC	1 cut(s)	551
SetI	ASST	6 cut(s)	88, 176, 188, 315, 321, 565
SfaNI	GCATC	1 cut(s)	42
SfoI	GGCGCC	3 cut(s)	225, 231, 237
SgrAI	CRCCGGYG	2 cut(s)	226, 232
SmiMI	CAYNNNNRTG	1 cut(s)	432
SmlI	CTYRAG	2 cut(s)	266, 314
SmoI	CTYRAG	2 cut(s)	266, 314
SphI	GCATGC	1 cut(s)	391
Sse9I	AATT	4 cut(s)	77, 97, 455, 477
SsiI	CCGC	2 cut(s)	196, 273
SspDI	GGCGCC	3 cut(s)	223, 229, 235
SspMI	CTAG	2 cut(s)	89, 290
TaaI	ACNGT	2 cut(s)	245, 553
TaqI	TCGA	1 cut(s)	182
TasI	AATT	4 cut(s)	77, 97, 455, 477
Tru1I	TTAA	1 cut(s)	267
Tru9I	TTAA	1 cut(s)	267
TscAI	CASTG	1 cut(s)	250
TseFI	GTSAC	2 cut(s)	174, 563
TseI	GCWGC	1 cut(s)	93
Tsp45I	GTSAC	2 cut(s)	174, 563
TspDTI	ATGAA	1 cut(s)	68
TspGWI	ACGGA	2 cut(s)	497, 506
TspRI	CASTG	1 cut(s)	250
Vha464I	CTTAAG	1 cut(s)	266
XagI	CCTNNNNNAGG	1 cut(s)	466
XapI	RAATTY	1 cut(s)	77
XceI	RCATGY	3 cut(s)	391, 437, 507
XspI	CTAG	2 cut(s)	89, 290

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.