FvH4_3g22940

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000118
Physical Location & Seq
Forward (+)
16080565 .. 16081112
548 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g22940.t1

Sequence Viewer

Length: 453 bp
ATGTTGATGTGGGTCATTGGCCTCGCCGCCATTCGTCAAATGGCGGGTCTGTGGGGGACGATGGGGACCGATGGTGTGGCTGAGATACGCGCTCGATCGGGATCGATGGTAGGTGATTGGATCTACTCAAATCTGGTTGTCATTCCATGTGCATTTCTTTTCCAGGTCAGCGCTCCAAATCCAGTAACAGAAAGCAACGACGAGTGCTCTAGAGTTGGATATTATATTCAATTCAGACGCTTGGGATTTGAGGGGAGATTTCTGACCTTCTGGTGCTTGGCTGACGGAATCGATCTGATGGCTTTTGGGGTCCACGACGGAGACGATGCGAGGATCTTGGCGGAGCGATCATGGCGACGGGACTGTCTGTGTTACATGCGTTGTGGGCTGGGTCAGAGGTTAGGACCCTTCTGGTCTCAATCTCAGTTTGGGCCTGTTATAACATGGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

151

Amino Acids

16.87

Weight (kDa)

5.75

Isoelectric Point (pI)

44.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000118)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01361 FvH4_1g07161 FvH4_1g07431 FvH4_1g07821 FvH4_1g08223 FvH4_1g10041 FvH4_1g12132 FvH4_1g15053 FvH4_1g18161 FvH4_1g18400 FvH4_1g18931 FvH4_1g19242 FvH4_1g19461 FvH4_1g20550 FvH4_1g21381 FvH4_1g21542 FvH4_1g22102 FvH4_1g23991 FvH4_1g24542 FvH4_1g24951 FvH4_1g24960 FvH4_1g25272 FvH4_1g25552 FvH4_1g25771 FvH4_1g28771 FvH4_1g29201 FvH4_1g29611 FvH4_2g01181 FvH4_2g02491 FvH4_2g04621 FvH4_2g04631 FvH4_2g07460 FvH4_2g08540 FvH4_2g08550 FvH4_2g09292 FvH4_2g10501 FvH4_2g12101 FvH4_2g12220 FvH4_2g12551 FvH4_2g14071 FvH4_2g14241 FvH4_2g15041 FvH4_2g15311 FvH4_2g18971 FvH4_2g19220 FvH4_2g19260 FvH4_2g19611 FvH4_2g19652 FvH4_2g20211 FvH4_2g20231 FvH4_2g21541 FvH4_2g22380 FvH4_2g27712 FvH4_2g28171 FvH4_2g29879 FvH4_2g32391 FvH4_3g02171 FvH4_3g05531 FvH4_3g09750 FvH4_3g10310 FvH4_3g10460 FvH4_3g13172 FvH4_3g15232 FvH4_3g18481 FvH4_3g18621 FvH4_3g20504 FvH4_3g20812 FvH4_3g22320 FvH4_3g22930 FvH4_3g22940 FvH4_3g23752 FvH4_3g24791 FvH4_3g26411 FvH4_3g26432 FvH4_3g27201 FvH4_3g27862 FvH4_3g28871 FvH4_3g28954 FvH4_3g29131 FvH4_3g29832 FvH4_3g29922 FvH4_3g30190 FvH4_3g32231 FvH4_3g32250 FvH4_3g33460 FvH4_3g34670 FvH4_3g36982 FvH4_3g37001 FvH4_3g38252 FvH4_3g38772 FvH4_3g40141 FvH4_3g40181 FvH4_3g42521 FvH4_4g00090 FvH4_4g00290 FvH4_4g00301 FvH4_4g00530 FvH4_4g00823 FvH4_4g02300 FvH4_4g02450 FvH4_4g03360 FvH4_4g04481 FvH4_4g04761 FvH4_4g06301 FvH4_4g06630 FvH4_4g08312 FvH4_4g08552 FvH4_4g10053 FvH4_4g11971 FvH4_4g13211 FvH4_4g13511 FvH4_4g15351 FvH4_4g16360 FvH4_4g16601 FvH4_4g18462 FvH4_4g22911 FvH4_4g23221 FvH4_4g24301 FvH4_4g24721 FvH4_4g27905 FvH4_4g28971 FvH4_4g29540 FvH4_4g30720 FvH4_4g31521 FvH4_4g33371 FvH4_4g34111 FvH4_4g35740 FvH4_5g00131 FvH4_5g02530 FvH4_5g02550 FvH4_5g02560 FvH4_5g02580 FvH4_5g03783 FvH4_5g05681 FvH4_5g05681 FvH4_5g09371 FvH4_5g09381 FvH4_5g14611 FvH4_5g15341 FvH4_5g19801 FvH4_5g20110 FvH4_5g20911 FvH4_5g22230 FvH4_5g25751 FvH4_5g26070 FvH4_5g26471 FvH4_5g27072 FvH4_5g27471 FvH4_5g27471 FvH4_5g27998 FvH4_5g28291 FvH4_5g30951 FvH4_5g31082 FvH4_5g31890 FvH4_5g32251 FvH4_5g34112 FvH4_5g37184 FvH4_5g37993 FvH4_5g38271 FvH4_6g00153 FvH4_6g00640 FvH4_6g05921 FvH4_6g08591 FvH4_6g09511 FvH4_6g10331 FvH4_6g10401 FvH4_6g14161 FvH4_6g14171 FvH4_6g18481 FvH4_6g19721 FvH4_6g19980 FvH4_6g20104 FvH4_6g20112 FvH4_6g21261 FvH4_6g21651 FvH4_6g22051 FvH4_6g23141 FvH4_6g24822 FvH4_6g25082 FvH4_6g25391 FvH4_6g25560 FvH4_6g26350 FvH4_6g27031 FvH4_6g27810 FvH4_6g27971 FvH4_6g28331 FvH4_6g29391 FvH4_6g30781 FvH4_6g32221 FvH4_6g34680 FvH4_6g36181 FvH4_6g36551 FvH4_6g37491 FvH4_6g37663 FvH4_6g39590 FvH4_6g40582 FvH4_6g43843 FvH4_6g50551 FvH4_7g00240 FvH4_7g00731 FvH4_7g01031 FvH4_7g03301 FvH4_7g08180 FvH4_7g08180 FvH4_7g10631 FvH4_7g19710 FvH4_7g23892 FvH4_7g25280 FvH4_7g25551 FvH4_7g30121 FvH4_7g31931 FvH4_7g32672 FvH4_c21g00040 FvH4_c2g00053
prunus_persica Prupe.1G448800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322451 RchiOBHm_Chr5g0015171
rosa_laevigata RLG00000003077 RLG00000018186 RLG00000030343
rosa_multiflora Rmu_co8096726.1_g000001
rosa_roxburghii Rroxscaffold_157G00438380 Rroxscaffold_1G00001730 Rroxscaffold_3G00236310
rosa_rugosa Rorug02G0236500
rosa_samantha Rh4BG247300 Rh6BG286200 Rh6CG287300 Rh7DG257500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 440
AasI GACNNNNNNGTC 1 cut(s) 363
AccII CGCG 1 cut(s) 90
AciI CCGC 3 cut(s) 27, 44, 341
AclWI GGATC 3 cut(s) 109, 128, 341
AfeI AGCGCT 1 cut(s) 172
AgsI TTSAA 1 cut(s) 230
AjnI CCWGG 1 cut(s) 162
Alw21I GWGCWC 1 cut(s) 209
Alw26I GTCTC 2 cut(s) 315, 420
AlwI GGATC 3 cut(s) 109, 128, 341
Aor51HI AGCGCT 1 cut(s) 172
AoxI GGCC 2 cut(s) 19, 431
ArsI GACNNNNNNTTYG 2 cut(s) 31, 63
AspLEI GCGC 2 cut(s) 92, 173
AspS9I GGNCC 4 cut(s) 66, 310, 404, 431
AsuHPI GGTGA 1 cut(s) 125
AvaII GGWCC 3 cut(s) 66, 310, 404
Bbv12I GWGCWC 1 cut(s) 209
BccI CCATC 4 cut(s) 55, 65, 100, 292
BciT130I CCWGG 1 cut(s) 164
BcoDI GTCTC 2 cut(s) 315, 420
BfaI CTAG 1 cut(s) 210
BfoI RGCGCY 1 cut(s) 174
BisI GCNGC 1 cut(s) 27
BlsI GCNGC 1 cut(s) 28
Bme1390I CCNGG 1 cut(s) 164
Bme18I GGWCC 3 cut(s) 66, 310, 404
BmgT120I GGNCC 4 cut(s) 66, 310, 404, 431
BmiI GGNNCC 3 cut(s) 67, 311, 406
BmrFI CCNGG 1 cut(s) 164
BmsI GCATC 1 cut(s) 316
Bsa29I ATCGAT 2 cut(s) 104, 291
BsaBI GATNNNNATC 1 cut(s) 100
BsaI GGTCTC 1 cut(s) 420
Bse1I ACTGG 1 cut(s) 182
Bse8I GATNNNNATC 1 cut(s) 100
BseBI CCWGG 1 cut(s) 164
BseCI ATCGAT 2 cut(s) 104, 291
BseJI GATNNNNATC 1 cut(s) 100
BseMII CTCAG 2 cut(s) 72, 437
BseNI ACTGG 1 cut(s) 182
BseYI CCCAGC 1 cut(s) 388
Bsh1236I CGCG 1 cut(s) 90
Bsh1285I CGRYCG 1 cut(s) 98
BshFI GGCC 2 cut(s) 21, 433
BshVI ATCGAT 2 cut(s) 104, 291
BsiEI CGRYCG 1 cut(s) 98
BsiHKAI GWGCWC 1 cut(s) 209
BslFI GGGAC 3 cut(s) 70, 79, 374
BsmAI GTCTC 2 cut(s) 315, 420
BsmBI CGTCTC 1 cut(s) 315
BsmFI GGGAC 3 cut(s) 70, 79, 374
BsnI GGCC 2 cut(s) 21, 433
Bso31I GGTCTC 1 cut(s) 420
Bsp1286I GDGCHC 1 cut(s) 209
Bsp143I GATC 6 cut(s) 95, 101, 120, 292, 333, 347
BspACI CCGC 3 cut(s) 27, 44, 341
BspANI GGCC 2 cut(s) 21, 433
BspCNI CTCAG 2 cut(s) 73, 436
BspDI ATCGAT 2 cut(s) 104, 291
BspFNI CGCG 1 cut(s) 90
BspLI GGNNCC 3 cut(s) 67, 311, 406
BspPI GGATC 3 cut(s) 109, 128, 341
BspTNI GGTCTC 1 cut(s) 420
BsrI ACTGG 1 cut(s) 182
BssMI GATC 6 cut(s) 95, 101, 120, 292, 333, 347
Bst2UI CCWGG 1 cut(s) 164
Bst4CI ACNGT 1 cut(s) 365
BstDEI CTNAG 2 cut(s) 81, 423
BstFNI CGCG 1 cut(s) 90
BstH2I RGCGCY 1 cut(s) 174
BstHHI GCGC 2 cut(s) 92, 173
BstKTI GATC 6 cut(s) 98, 104, 123, 295, 336, 350
BstMAI GTCTC 2 cut(s) 315, 420
BstMBI GATC 6 cut(s) 95, 101, 120, 292, 333, 347
BstMCI CGRYCG 1 cut(s) 98
BstMWI GCNNNNNNNGC 2 cut(s) 352, 385
BstNI CCWGG 1 cut(s) 164
BstNSI RCATGY 1 cut(s) 379
BstSCI CCNGG 1 cut(s) 162
BstUI CGCG 1 cut(s) 90
BstX2I RGATCY 2 cut(s) 120, 333
BstYI RGATCY 2 cut(s) 120, 333
Bsu15I ATCGAT 2 cut(s) 104, 291
BsuRI GGCC 2 cut(s) 21, 433
BsuTUI ATCGAT 2 cut(s) 104, 291
CfoI GCGC 2 cut(s) 92, 173
Cfr13I GGNCC 4 cut(s) 66, 310, 404, 431
ClaI ATCGAT 2 cut(s) 104, 291
CseI GACGC 1 cut(s) 246
CviAII CATG 4 cut(s) 147, 351, 376, 444
CviJI RGCY 7 cut(s) 21, 80, 281, 302, 388, 433, 449
CviKI_1 RGCY 7 cut(s) 21, 80, 281, 302, 388, 433, 449
DdeI CTNAG 2 cut(s) 81, 423
DpnI GATC 6 cut(s) 97, 103, 122, 294, 335, 349
DpnII GATC 6 cut(s) 95, 101, 120, 292, 333, 347
DrdI GACNNNNNNGTC 1 cut(s) 363
DseDI GACNNNNNNGTC 1 cut(s) 363
EciI GGCGGA 1 cut(s) 356
Eco31I GGTCTC 1 cut(s) 420
Eco47I GGWCC 3 cut(s) 66, 310, 404
Eco47III AGCGCT 1 cut(s) 172
EcoO109I RGGNCCY 1 cut(s) 404
EcoRII CCWGG 1 cut(s) 162
Esp3I CGTCTC 1 cut(s) 315
FaeI CATG 4 cut(s) 150, 354, 379, 447
FaiI YATR 6 cut(s) 148, 225, 352, 377, 440, 445
FaqI GGGAC 3 cut(s) 70, 79, 374
FatI CATG 4 cut(s) 146, 350, 375, 443
FauI CCCGC 1 cut(s) 37
Fnu4HI GCNGC 1 cut(s) 27
Fsp4HI GCNGC 1 cut(s) 27
FspBI CTAG 1 cut(s) 210
GlaI GCGC 2 cut(s) 91, 172
GluI GCNGC 1 cut(s) 27
GsaI CCCAGC 1 cut(s) 392
HaeII RGCGCY 1 cut(s) 174
HaeIII GGCC 2 cut(s) 21, 433
HgaI GACGC 1 cut(s) 246
HhaI GCGC 2 cut(s) 92, 173
Hin1II CATG 4 cut(s) 150, 354, 379, 447
Hin6I GCGC 2 cut(s) 90, 171
HinP1I GCGC 2 cut(s) 90, 171
HinfI GANTC 1 cut(s) 288
HphI GGTGA 1 cut(s) 125
Hpy166II GTNNAC 1 cut(s) 313
Hpy188I TCNGA 4 cut(s) 236, 264, 297, 396
Hpy188III TCNNGA 2 cut(s) 99, 210
Hpy8I GTNNAC 1 cut(s) 313
Hpy99I CGWCG 3 cut(s) 203, 320, 360
HpyAV CCTTC 2 cut(s) 277, 418
HpyCH4III ACNGT 1 cut(s) 365
HpyCH4V TGCA 1 cut(s) 152
HpyF10VI GCNNNNNNNGC 2 cut(s) 352, 385
HpyF3I CTNAG 2 cut(s) 81, 423
Hsp92II CATG 4 cut(s) 150, 354, 379, 447
HspAI GCGC 2 cut(s) 90, 171
Kzo9I GATC 6 cut(s) 95, 101, 120, 292, 333, 347
LmnI GCTCC 2 cut(s) 178, 343
LpnPI CCDG 8 cut(s) 119, 149, 176, 195, 256, 374, 397, 447
LweI GCATC 1 cut(s) 316
MaeI CTAG 1 cut(s) 210
MaeIII GTNAC 2 cut(s) 184, 371
MalI GATC 6 cut(s) 97, 103, 122, 294, 335, 349
MboI GATC 6 cut(s) 95, 101, 120, 292, 333, 347
MflI RGATCY 2 cut(s) 120, 333
MhlI GDGCHC 1 cut(s) 209
MluCI AATT 1 cut(s) 230
MmeI TCCRAC 1 cut(s) 196
MnlI CCTC 4 cut(s) 32, 244, 324, 390
MspR9I CCNGG 1 cut(s) 164
MvaI CCWGG 1 cut(s) 164
MvnI CGCG 1 cut(s) 90
MwoI GCNNNNNNNGC 2 cut(s) 352, 385
NdeII GATC 6 cut(s) 95, 101, 120, 292, 333, 347
NlaIII CATG 4 cut(s) 150, 354, 379, 447
NlaIV GGNNCC 3 cut(s) 67, 311, 406
NspI RCATGY 1 cut(s) 379
PcsI WCGNNNNNNNCGW 1 cut(s) 321
PfeI GAWTC 1 cut(s) 288
PkrI GCNGC 1 cut(s) 28
Ple19I CGATCG 1 cut(s) 98
PpuMI RGGWCCY 1 cut(s) 404
PsiI TTATAA 1 cut(s) 440
Psp5II RGGWCCY 1 cut(s) 404
Psp6I CCWGG 1 cut(s) 162
PspFI CCCAGC 1 cut(s) 388
PspGI CCWGG 1 cut(s) 162
PspN4I GGNNCC 3 cut(s) 67, 311, 406
PspPI GGNCC 4 cut(s) 66, 310, 404, 431
PspPPI RGGWCCY 1 cut(s) 404
PsuI RGATCY 2 cut(s) 120, 333
PvuI CGATCG 1 cut(s) 98
SatI GCNGC 1 cut(s) 27
Sau3AI GATC 6 cut(s) 95, 101, 120, 292, 333, 347
Sau96I GGNCC 4 cut(s) 66, 310, 404, 431
ScrFI CCNGG 1 cut(s) 164
SduI GDGCHC 1 cut(s) 209
SetI ASST 4 cut(s) 115, 168, 269, 401
SfaNI GCATC 1 cut(s) 316
SinI GGWCC 3 cut(s) 66, 310, 404
Sse9I AATT 1 cut(s) 230
SsiI CCGC 3 cut(s) 27, 44, 341
SspMI CTAG 1 cut(s) 210
StyD4I CCNGG 1 cut(s) 162
TaaI ACNGT 1 cut(s) 365
TaqI TCGA 3 cut(s) 94, 104, 291
TaqII GACCGA 1 cut(s) 83
TasI AATT 1 cut(s) 230
TauI GCSGC 1 cut(s) 29
TfiI GAWTC 1 cut(s) 288
TspGWI ACGGA 2 cut(s) 300, 333
VpaK11BI GGWCC 3 cut(s) 66, 310, 404
XbaI TCTAGA 1 cut(s) 209
XceI RCATGY 1 cut(s) 379
XcmI CCANNNNNNNNNTGG 1 cut(s) 37
XspI CTAG 1 cut(s) 210
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.