FvH4_4g16360

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000118
Physical Location & Seq
Reverse (-)
20330368 .. 20331243
876 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g16360.t1

Sequence Viewer

Length: 246 bp
ATGCCTCTTGATTATGTTCTAGCTATGGAATTGCAAAGCAATAGCAGTTCAAAAGAATCAAAGTCTGCAGAAGAAGAGAAGTCATATCTGTTTTCCGTTTCAGATACGGACGTCCGCACCGCCTTAAGATGCGGATTTCCCTCCGTTCACCATTGTACGGGTCCGGCGAGGGCGCGCCTCCACCCCAGCGGACTCCAGCAGCTTCCCCGACCATTTTCCCTCCCCGGCGAGTCCGCCGAATTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

82

Amino Acids

8.91

Weight (kDa)

5.84

Isoelectric Point (pI)

69.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000118)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01361 FvH4_1g07161 FvH4_1g07431 FvH4_1g07821 FvH4_1g08223 FvH4_1g10041 FvH4_1g12132 FvH4_1g15053 FvH4_1g18161 FvH4_1g18400 FvH4_1g18931 FvH4_1g19242 FvH4_1g19461 FvH4_1g20550 FvH4_1g21381 FvH4_1g21542 FvH4_1g22102 FvH4_1g23991 FvH4_1g24542 FvH4_1g24951 FvH4_1g24960 FvH4_1g25272 FvH4_1g25552 FvH4_1g25771 FvH4_1g28771 FvH4_1g29201 FvH4_1g29611 FvH4_2g01181 FvH4_2g02491 FvH4_2g04621 FvH4_2g04631 FvH4_2g07460 FvH4_2g08540 FvH4_2g08550 FvH4_2g09292 FvH4_2g10501 FvH4_2g12101 FvH4_2g12220 FvH4_2g12551 FvH4_2g14071 FvH4_2g14241 FvH4_2g15041 FvH4_2g15311 FvH4_2g18971 FvH4_2g19220 FvH4_2g19260 FvH4_2g19611 FvH4_2g19652 FvH4_2g20211 FvH4_2g20231 FvH4_2g21541 FvH4_2g22380 FvH4_2g27712 FvH4_2g28171 FvH4_2g29879 FvH4_2g32391 FvH4_3g02171 FvH4_3g05531 FvH4_3g09750 FvH4_3g10310 FvH4_3g10460 FvH4_3g13172 FvH4_3g15232 FvH4_3g18481 FvH4_3g18621 FvH4_3g20504 FvH4_3g20812 FvH4_3g22320 FvH4_3g22930 FvH4_3g22940 FvH4_3g23752 FvH4_3g24791 FvH4_3g26411 FvH4_3g26432 FvH4_3g27201 FvH4_3g27862 FvH4_3g28871 FvH4_3g28954 FvH4_3g29131 FvH4_3g29832 FvH4_3g29922 FvH4_3g30190 FvH4_3g32231 FvH4_3g32250 FvH4_3g33460 FvH4_3g34670 FvH4_3g36982 FvH4_3g37001 FvH4_3g38252 FvH4_3g38772 FvH4_3g40141 FvH4_3g40181 FvH4_3g42521 FvH4_4g00090 FvH4_4g00290 FvH4_4g00301 FvH4_4g00530 FvH4_4g00823 FvH4_4g02300 FvH4_4g02450 FvH4_4g03360 FvH4_4g04481 FvH4_4g04761 FvH4_4g06301 FvH4_4g06630 FvH4_4g08312 FvH4_4g08552 FvH4_4g10053 FvH4_4g11971 FvH4_4g13211 FvH4_4g13511 FvH4_4g15351 FvH4_4g16360 FvH4_4g16601 FvH4_4g18462 FvH4_4g22911 FvH4_4g23221 FvH4_4g24301 FvH4_4g24721 FvH4_4g27905 FvH4_4g28971 FvH4_4g29540 FvH4_4g30720 FvH4_4g31521 FvH4_4g33371 FvH4_4g34111 FvH4_4g35740 FvH4_5g00131 FvH4_5g02530 FvH4_5g02550 FvH4_5g02560 FvH4_5g02580 FvH4_5g03783 FvH4_5g05681 FvH4_5g05681 FvH4_5g09371 FvH4_5g09381 FvH4_5g14611 FvH4_5g15341 FvH4_5g19801 FvH4_5g20110 FvH4_5g20911 FvH4_5g22230 FvH4_5g25751 FvH4_5g26070 FvH4_5g26471 FvH4_5g27072 FvH4_5g27471 FvH4_5g27471 FvH4_5g27998 FvH4_5g28291 FvH4_5g30951 FvH4_5g31082 FvH4_5g31890 FvH4_5g32251 FvH4_5g34112 FvH4_5g37184 FvH4_5g37993 FvH4_5g38271 FvH4_6g00153 FvH4_6g00640 FvH4_6g05921 FvH4_6g08591 FvH4_6g09511 FvH4_6g10331 FvH4_6g10401 FvH4_6g14161 FvH4_6g14171 FvH4_6g18481 FvH4_6g19721 FvH4_6g19980 FvH4_6g20104 FvH4_6g20112 FvH4_6g21261 FvH4_6g21651 FvH4_6g22051 FvH4_6g23141 FvH4_6g24822 FvH4_6g25082 FvH4_6g25391 FvH4_6g25560 FvH4_6g26350 FvH4_6g27031 FvH4_6g27810 FvH4_6g27971 FvH4_6g28331 FvH4_6g29391 FvH4_6g30781 FvH4_6g32221 FvH4_6g34680 FvH4_6g36181 FvH4_6g36551 FvH4_6g37491 FvH4_6g37663 FvH4_6g39590 FvH4_6g40582 FvH4_6g43843 FvH4_6g50551 FvH4_7g00240 FvH4_7g00731 FvH4_7g01031 FvH4_7g03301 FvH4_7g08180 FvH4_7g08180 FvH4_7g10631 FvH4_7g19710 FvH4_7g23892 FvH4_7g25280 FvH4_7g25551 FvH4_7g30121 FvH4_7g31931 FvH4_7g32672 FvH4_c21g00040 FvH4_c2g00053
prunus_persica Prupe.1G448800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322451 RchiOBHm_Chr5g0015171
rosa_laevigata RLG00000003077 RLG00000018186 RLG00000030343
rosa_multiflora Rmu_co8096726.1_g000001
rosa_roxburghii Rroxscaffold_157G00438380 Rroxscaffold_1G00001730 Rroxscaffold_3G00236310
rosa_rugosa Rorug02G0236500
rosa_samantha Rh4BG247300 Rh6BG286200 Rh6CG287300 Rh7DG257500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 114
AccII CGCG 1 cut(s) 175
AciI CCGC 5 cut(s) 115, 120, 132, 189, 234
AcsI RAATTY 1 cut(s) 239
AcyI GRCGYC 1 cut(s) 111
AfaI GTAC 1 cut(s) 157
AfiI CCNNNNNNNGG 1 cut(s) 157
AflII CTTAAG 1 cut(s) 124
AgsI TTSAA 1 cut(s) 51
AluBI AGCT 2 cut(s) 23, 202
AluI AGCT 2 cut(s) 23, 202
ApeKI GCWGC 1 cut(s) 199
ApoI RAATTY 1 cut(s) 239
AscI GGCGCGCC 1 cut(s) 173
AspLEI GCGC 2 cut(s) 175, 177
AspS9I GGNCC 1 cut(s) 161
AsuC2I CCSGG 1 cut(s) 225
AsuHPI GGTGA 1 cut(s) 140
AvaII GGWCC 1 cut(s) 161
BaeI ACNNNNGTAYC 2 cut(s) 96, 129
BbvI GCAGC 1 cut(s) 211
BcnI CCSGG 1 cut(s) 225
BfaI CTAG 2 cut(s) 20, 244
BfmI CTRYAG 1 cut(s) 66
BfrI CTTAAG 1 cut(s) 124
BisI GCNGC 1 cut(s) 200
BlsI GCNGC 1 cut(s) 201
Bme1390I CCNGG 1 cut(s) 225
Bme18I GGWCC 1 cut(s) 161
BmgT120I GGNCC 1 cut(s) 161
BmiI GGNNCC 1 cut(s) 162
BmrFI CCNGG 1 cut(s) 225
BmsI GCATC 1 cut(s) 119
BpmI CTGGAG 1 cut(s) 179
BpuMI CCSGG 1 cut(s) 225
BsaHI GRCGYC 1 cut(s) 111
BsaJI CCNNGG 1 cut(s) 223
Bsc4I CCNNNNNNNGG 1 cut(s) 157
BseDI CCNNGG 1 cut(s) 223
BseLI CCNNNNNNNGG 1 cut(s) 157
BsePI GCGCGC 1 cut(s) 173
BseXI GCAGC 1 cut(s) 211
BseYI CCCAGC 1 cut(s) 185
Bsh1236I CGCG 1 cut(s) 175
BsiSI CCGG 2 cut(s) 164, 225
BslI CCNNNNNNNGG 1 cut(s) 157
BspACI CCGC 5 cut(s) 115, 120, 132, 189, 234
BspFNI CGCG 1 cut(s) 175
BspLI GGNNCC 1 cut(s) 162
BspMAI CTGCAG 1 cut(s) 70
BspTI CTTAAG 1 cut(s) 124
BssECI CCNNGG 1 cut(s) 223
BssHII GCGCGC 1 cut(s) 173
BssNI GRCGYC 1 cut(s) 111
Bst6I CTCTTC 1 cut(s) 69
BstACI GRCGYC 1 cut(s) 111
BstAFI CTTAAG 1 cut(s) 124
BstC8I GCNNGC 1 cut(s) 175
BstFNI CGCG 1 cut(s) 175
BstHHI GCGC 2 cut(s) 175, 177
BstSCI CCNGG 1 cut(s) 223
BstSFI CTRYAG 1 cut(s) 66
BstUI CGCG 1 cut(s) 175
BstV1I GCAGC 1 cut(s) 211
Cac8I GCNNGC 1 cut(s) 175
CfoI GCGC 2 cut(s) 175, 177
Cfr13I GGNCC 1 cut(s) 161
Csp6I GTAC 1 cut(s) 156
CviJI RGCY 2 cut(s) 23, 202
CviKI_1 RGCY 2 cut(s) 23, 202
CviQI GTAC 1 cut(s) 156
Eam1104I CTCTTC 1 cut(s) 69
EarI CTCTTC 1 cut(s) 69
EciI GGCGGA 1 cut(s) 223
Eco47I GGWCC 1 cut(s) 161
EcoRI GAATTC 1 cut(s) 239
FaiI YATR 3 cut(s) 15, 26, 85
Fnu4HI GCNGC 1 cut(s) 200
Fsp4HI GCNGC 1 cut(s) 200
FspBI CTAG 2 cut(s) 20, 244
GlaI GCGC 2 cut(s) 174, 176
GluI GCNGC 1 cut(s) 200
GsaI CCCAGC 1 cut(s) 189
GsuI CTGGAG 1 cut(s) 179
HapII CCGG 2 cut(s) 164, 225
HhaI GCGC 2 cut(s) 175, 177
Hin1I GRCGYC 1 cut(s) 111
Hin6I GCGC 2 cut(s) 173, 175
HinP1I GCGC 2 cut(s) 173, 175
HinfI GANTC 3 cut(s) 56, 192, 230
HpaII CCGG 2 cut(s) 164, 225
HphI GGTGA 1 cut(s) 140
Hpy166II GTNNAC 1 cut(s) 148
Hpy188I TCNGA 1 cut(s) 103
Hpy188III TCNNGA 1 cut(s) 8
Hpy8I GTNNAC 1 cut(s) 148
HpyCH4IV ACGT 1 cut(s) 111
HpyCH4V TGCA 2 cut(s) 34, 68
HpySE526I ACGT 1 cut(s) 111
Hsp92I GRCGYC 1 cut(s) 111
HspAI GCGC 2 cut(s) 173, 175
LpnPI CCDG 4 cut(s) 177, 199, 209, 238
Lsp1109I GCAGC 1 cut(s) 211
LweI GCATC 1 cut(s) 119
MaeI CTAG 2 cut(s) 20, 244
MaeII ACGT 1 cut(s) 111
MboII GAAGA 2 cut(s) 83, 86
MluCI AATT 2 cut(s) 29, 239
MlyI GAGTC 2 cut(s) 186, 239
MnlI CCTC 5 cut(s) 15, 151, 162, 188, 230
MseI TTAA 1 cut(s) 125
MspA1I CMGCKG 1 cut(s) 189
MspCI CTTAAG 1 cut(s) 124
MspI CCGG 2 cut(s) 164, 225
MspR9I CCNGG 1 cut(s) 225
MvnI CGCG 1 cut(s) 175
NciI CCSGG 1 cut(s) 225
NlaIV GGNNCC 1 cut(s) 162
PalAI GGCGCGCC 1 cut(s) 173
PauI GCGCGC 1 cut(s) 173
PcsI WCGNNNNNNNCGW 1 cut(s) 164
PfeI GAWTC 1 cut(s) 56
PkrI GCNGC 1 cut(s) 201
PleI GAGTC 2 cut(s) 186, 238
PpsI GAGTC 2 cut(s) 186, 238
PspFI CCCAGC 1 cut(s) 185
PspN4I GGNNCC 1 cut(s) 162
PspPI GGNCC 1 cut(s) 161
PstI CTGCAG 1 cut(s) 70
PteI GCGCGC 1 cut(s) 173
RsaI GTAC 1 cut(s) 157
RsaNI GTAC 1 cut(s) 156
SaqAI TTAA 1 cut(s) 125
SatI GCNGC 1 cut(s) 200
Sau96I GGNCC 1 cut(s) 161
SchI GAGTC 2 cut(s) 186, 239
ScrFI CCNGG 1 cut(s) 225
SetI ASST 3 cut(s) 25, 114, 204
SfaNI GCATC 1 cut(s) 119
SfcI CTRYAG 1 cut(s) 66
SgsI GGCGCGCC 1 cut(s) 173
SinI GGWCC 1 cut(s) 161
SmlI CTYRAG 1 cut(s) 124
SmoI CTYRAG 1 cut(s) 124
Sse9I AATT 2 cut(s) 29, 239
SsiI CCGC 5 cut(s) 115, 120, 132, 189, 234
SspMI CTAG 2 cut(s) 20, 244
StyD4I CCNGG 1 cut(s) 223
TaiI ACGT 1 cut(s) 114
TasI AATT 2 cut(s) 29, 239
TfiI GAWTC 1 cut(s) 56
Tru1I TTAA 1 cut(s) 125
Tru9I TTAA 1 cut(s) 125
TseI GCWGC 1 cut(s) 199
TspGWI ACGGA 3 cut(s) 85, 122, 133
Vha464I CTTAAG 1 cut(s) 124
VpaK11BI GGWCC 1 cut(s) 161
XapI RAATTY 1 cut(s) 239
XspI CTAG 2 cut(s) 20, 244
ZraI GACGTC 1 cut(s) 112
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.