FvH4_6g27810

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000118
Physical Location & Seq
Forward (+)
21428531 .. 21429316
786 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g27810.t1

Sequence Viewer

Length: 276 bp
ATGGGAAGTTGCACTCAAGCTAGAGATTGCAAAAAGAAGTTCCGGGGAATACATCCCTCCCAAATCCACTTATGTTTACTGCTTTATCTTATACAGAAACGTTCTGAAGCGGACGTCCGCACTGGGCTTAAAGTGCGGACGTCCCTCTGTTCTTCTCCGGACGGCTCCGACGACGGCGCGCCTCCACCCGAGCGGACACCAAAGGCATCCCCGATCACTTTCCCTTACCGGCAGTCCGCCGAATACCAGTTTGCAGCCGAGATCGATCTTGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

92

Amino Acids

10.09

Weight (kDa)

8.78

Isoelectric Point (pI)

58.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000118)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01361 FvH4_1g07161 FvH4_1g07431 FvH4_1g07821 FvH4_1g08223 FvH4_1g10041 FvH4_1g12132 FvH4_1g15053 FvH4_1g18161 FvH4_1g18400 FvH4_1g18931 FvH4_1g19242 FvH4_1g19461 FvH4_1g20550 FvH4_1g21381 FvH4_1g21542 FvH4_1g22102 FvH4_1g23991 FvH4_1g24542 FvH4_1g24951 FvH4_1g24960 FvH4_1g25272 FvH4_1g25552 FvH4_1g25771 FvH4_1g28771 FvH4_1g29201 FvH4_1g29611 FvH4_2g01181 FvH4_2g02491 FvH4_2g04621 FvH4_2g04631 FvH4_2g07460 FvH4_2g08540 FvH4_2g08550 FvH4_2g09292 FvH4_2g10501 FvH4_2g12101 FvH4_2g12220 FvH4_2g12551 FvH4_2g14071 FvH4_2g14241 FvH4_2g15041 FvH4_2g15311 FvH4_2g18971 FvH4_2g19220 FvH4_2g19260 FvH4_2g19611 FvH4_2g19652 FvH4_2g20211 FvH4_2g20231 FvH4_2g21541 FvH4_2g22380 FvH4_2g27712 FvH4_2g28171 FvH4_2g29879 FvH4_2g32391 FvH4_3g02171 FvH4_3g05531 FvH4_3g09750 FvH4_3g10310 FvH4_3g10460 FvH4_3g13172 FvH4_3g15232 FvH4_3g18481 FvH4_3g18621 FvH4_3g20504 FvH4_3g20812 FvH4_3g22320 FvH4_3g22930 FvH4_3g22940 FvH4_3g23752 FvH4_3g24791 FvH4_3g26411 FvH4_3g26432 FvH4_3g27201 FvH4_3g27862 FvH4_3g28871 FvH4_3g28954 FvH4_3g29131 FvH4_3g29832 FvH4_3g29922 FvH4_3g30190 FvH4_3g32231 FvH4_3g32250 FvH4_3g33460 FvH4_3g34670 FvH4_3g36982 FvH4_3g37001 FvH4_3g38252 FvH4_3g38772 FvH4_3g40141 FvH4_3g40181 FvH4_3g42521 FvH4_4g00090 FvH4_4g00290 FvH4_4g00301 FvH4_4g00530 FvH4_4g00823 FvH4_4g02300 FvH4_4g02450 FvH4_4g03360 FvH4_4g04481 FvH4_4g04761 FvH4_4g06301 FvH4_4g06630 FvH4_4g08312 FvH4_4g08552 FvH4_4g10053 FvH4_4g11971 FvH4_4g13211 FvH4_4g13511 FvH4_4g15351 FvH4_4g16360 FvH4_4g16601 FvH4_4g18462 FvH4_4g22911 FvH4_4g23221 FvH4_4g24301 FvH4_4g24721 FvH4_4g27905 FvH4_4g28971 FvH4_4g29540 FvH4_4g30720 FvH4_4g31521 FvH4_4g33371 FvH4_4g34111 FvH4_4g35740 FvH4_5g00131 FvH4_5g02530 FvH4_5g02550 FvH4_5g02560 FvH4_5g02580 FvH4_5g03783 FvH4_5g05681 FvH4_5g05681 FvH4_5g09371 FvH4_5g09381 FvH4_5g14611 FvH4_5g15341 FvH4_5g19801 FvH4_5g20110 FvH4_5g20911 FvH4_5g22230 FvH4_5g25751 FvH4_5g26070 FvH4_5g26471 FvH4_5g27072 FvH4_5g27471 FvH4_5g27471 FvH4_5g27998 FvH4_5g28291 FvH4_5g30951 FvH4_5g31082 FvH4_5g31890 FvH4_5g32251 FvH4_5g34112 FvH4_5g37184 FvH4_5g37993 FvH4_5g38271 FvH4_6g00153 FvH4_6g00640 FvH4_6g05921 FvH4_6g08591 FvH4_6g09511 FvH4_6g10331 FvH4_6g10401 FvH4_6g14161 FvH4_6g14171 FvH4_6g18481 FvH4_6g19721 FvH4_6g19980 FvH4_6g20104 FvH4_6g20112 FvH4_6g21261 FvH4_6g21651 FvH4_6g22051 FvH4_6g23141 FvH4_6g24822 FvH4_6g25082 FvH4_6g25391 FvH4_6g25560 FvH4_6g26350 FvH4_6g27031 FvH4_6g27810 FvH4_6g27971 FvH4_6g28331 FvH4_6g29391 FvH4_6g30781 FvH4_6g32221 FvH4_6g34680 FvH4_6g36181 FvH4_6g36551 FvH4_6g37491 FvH4_6g37663 FvH4_6g39590 FvH4_6g40582 FvH4_6g43843 FvH4_6g50551 FvH4_7g00240 FvH4_7g00731 FvH4_7g01031 FvH4_7g03301 FvH4_7g08180 FvH4_7g08180 FvH4_7g10631 FvH4_7g19710 FvH4_7g23892 FvH4_7g25280 FvH4_7g25551 FvH4_7g30121 FvH4_7g31931 FvH4_7g32672 FvH4_c21g00040 FvH4_c2g00053
prunus_persica Prupe.1G448800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322451 RchiOBHm_Chr5g0015171
rosa_laevigata RLG00000003077 RLG00000018186 RLG00000030343
rosa_multiflora Rmu_co8096726.1_g000001
rosa_roxburghii Rroxscaffold_157G00438380 Rroxscaffold_1G00001730 Rroxscaffold_3G00236310
rosa_rugosa Rorug02G0236500
rosa_samantha Rh4BG247300 Rh6BG286200 Rh6CG287300 Rh7DG257500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 117, 143
AccBSI CCGCTC 1 cut(s) 193
AccII CGCG 1 cut(s) 179
AccIII TCCGGA 1 cut(s) 157
AciI CCGC 5 cut(s) 110, 118, 136, 193, 237
AclI AACGTT 1 cut(s) 100
AcuI CTGAAG 1 cut(s) 126
AcyI GRCGYC 2 cut(s) 114, 140
AluBI AGCT 1 cut(s) 20
AluI AGCT 1 cut(s) 20
Ama87I CYCGRG 1 cut(s) 188
Aor13HI TCCGGA 1 cut(s) 157
ApeKI GCWGC 1 cut(s) 254
AscI GGCGCGCC 1 cut(s) 177
AspLEI GCGC 2 cut(s) 179, 181
AsuC2I CCSGG 1 cut(s) 44
AvaI CYCGRG 1 cut(s) 188
BbvI GCAGC 1 cut(s) 266
BceAI ACGGC 2 cut(s) 178, 190
BcnI CCSGG 1 cut(s) 44
BfaI CTAG 1 cut(s) 21
BisI GCNGC 1 cut(s) 255
BlsI GCNGC 1 cut(s) 256
Bme1390I CCNGG 1 cut(s) 44
BmeT110I CYCGRG 1 cut(s) 188
BmiI GGNNCC 1 cut(s) 166
BmrFI CCNGG 1 cut(s) 44
BmrI ACTGGG 1 cut(s) 132
BmsI GCATC 1 cut(s) 215
BmuI ACTGGG 1 cut(s) 132
BpuMI CCSGG 1 cut(s) 44
Bsa29I ATCGAT 1 cut(s) 264
BsaHI GRCGYC 2 cut(s) 114, 140
BsaJI CCNNGG 1 cut(s) 43
BsaWI WCCGGW 1 cut(s) 157
Bse118I RCCGGY 1 cut(s) 228
Bse1I ACTGG 2 cut(s) 127, 247
BseAI TCCGGA 1 cut(s) 157
BseCI ATCGAT 1 cut(s) 264
BseDI CCNNGG 1 cut(s) 43
BseGI GGATG 2 cut(s) 52, 206
BseNI ACTGG 2 cut(s) 127, 247
BsePI GCGCGC 1 cut(s) 177
BseXI GCAGC 1 cut(s) 266
Bsh1236I CGCG 1 cut(s) 179
BshVI ATCGAT 1 cut(s) 264
BsiHKCI CYCGRG 1 cut(s) 188
BsiSI CCGG 3 cut(s) 43, 158, 229
BslFI GGGAC 1 cut(s) 127
BsmFI GGGAC 1 cut(s) 127
BsoBI CYCGRG 1 cut(s) 188
Bsp13I TCCGGA 1 cut(s) 157
Bsp143I GATC 3 cut(s) 213, 261, 265
BspACI CCGC 5 cut(s) 110, 118, 136, 193, 237
BspDI ATCGAT 1 cut(s) 264
BspEI TCCGGA 1 cut(s) 157
BspFNI CGCG 1 cut(s) 179
BspLI GGNNCC 1 cut(s) 166
BsrBI CCGCTC 1 cut(s) 193
BsrFI RCCGGY 1 cut(s) 228
BsrI ACTGG 2 cut(s) 127, 247
BssAI RCCGGY 1 cut(s) 228
BssECI CCNNGG 1 cut(s) 43
BssHII GCGCGC 1 cut(s) 177
BssMI GATC 3 cut(s) 213, 261, 265
BssNI GRCGYC 2 cut(s) 114, 140
BstACI GRCGYC 2 cut(s) 114, 140
BstC8I GCNNGC 1 cut(s) 179
BstF5I GGATG 2 cut(s) 52, 206
BstFNI CGCG 1 cut(s) 179
BstHHI GCGC 2 cut(s) 179, 181
BstKTI GATC 3 cut(s) 216, 264, 268
BstMBI GATC 3 cut(s) 213, 261, 265
BstMWI GCNNNNNNNGC 1 cut(s) 133
BstSCI CCNGG 1 cut(s) 42
BstUI CGCG 1 cut(s) 179
BstV1I GCAGC 1 cut(s) 266
Bsu15I ATCGAT 1 cut(s) 264
BsuTUI ATCGAT 1 cut(s) 264
BtsCI GGATG 2 cut(s) 52, 206
BtsIMutI CAGTG 1 cut(s) 120
Cac8I GCNNGC 1 cut(s) 179
CfoI GCGC 2 cut(s) 179, 181
Cfr10I RCCGGY 1 cut(s) 228
ClaI ATCGAT 1 cut(s) 264
CviJI RGCY 4 cut(s) 20, 127, 165, 257
CviKI_1 RGCY 4 cut(s) 20, 127, 165, 257
DpnI GATC 3 cut(s) 215, 263, 267
DpnII GATC 3 cut(s) 213, 261, 265
EciI GGCGGA 1 cut(s) 226
Eco57I CTGAAG 1 cut(s) 126
Eco88I CYCGRG 1 cut(s) 188
FaiI YATR 2 cut(s) 73, 92
FaqI GGGAC 1 cut(s) 127
Fnu4HI GCNGC 1 cut(s) 255
FokI GGATG 2 cut(s) 39, 193
Fsp4HI GCNGC 1 cut(s) 255
FspBI CTAG 1 cut(s) 21
GlaI GCGC 2 cut(s) 178, 180
GluI GCNGC 1 cut(s) 255
HapII CCGG 3 cut(s) 43, 158, 229
HhaI GCGC 2 cut(s) 179, 181
Hin1I GRCGYC 2 cut(s) 114, 140
Hin6I GCGC 2 cut(s) 177, 179
HinP1I GCGC 2 cut(s) 177, 179
HpaII CCGG 3 cut(s) 43, 158, 229
Hpy166II GTNNAC 1 cut(s) 77
Hpy188I TCNGA 3 cut(s) 106, 169, 275
Hpy188III TCNNGA 1 cut(s) 158
Hpy8I GTNNAC 1 cut(s) 77
Hpy99I CGWCG 2 cut(s) 173, 176
HpyCH4IV ACGT 3 cut(s) 100, 114, 140
HpyCH4V TGCA 3 cut(s) 12, 30, 254
HpyF10VI GCNNNNNNNGC 1 cut(s) 133
HpySE526I ACGT 3 cut(s) 100, 114, 140
Hsp92I GRCGYC 2 cut(s) 114, 140
HspAI GCGC 2 cut(s) 177, 179
Kpn2I TCCGGA 1 cut(s) 157
Kzo9I GATC 3 cut(s) 213, 261, 265
LmnI GCTCC 1 cut(s) 170
LpnPI CCDG 5 cut(s) 56, 108, 171, 242, 260
Lsp1109I GCAGC 1 cut(s) 266
LweI GCATC 1 cut(s) 215
MaeI CTAG 1 cut(s) 21
MaeII ACGT 3 cut(s) 100, 114, 140
MalI GATC 3 cut(s) 215, 263, 267
MbiI CCGCTC 1 cut(s) 193
MboI GATC 3 cut(s) 213, 261, 265
MboII GAAGA 1 cut(s) 144
MmeI TCCRAC 1 cut(s) 192
MnlI CCTC 3 cut(s) 67, 155, 192
MroI TCCGGA 1 cut(s) 157
MseI TTAA 1 cut(s) 129
MspI CCGG 3 cut(s) 43, 158, 229
MspR9I CCNGG 1 cut(s) 44
MvnI CGCG 1 cut(s) 179
MwoI GCNNNNNNNGC 1 cut(s) 133
NciI CCSGG 1 cut(s) 44
NdeII GATC 3 cut(s) 213, 261, 265
NlaIV GGNNCC 1 cut(s) 166
PalAI GGCGCGCC 1 cut(s) 177
PauI GCGCGC 1 cut(s) 177
PcsI WCGNNNNNNNCGW 1 cut(s) 168
PkrI GCNGC 1 cut(s) 256
Psp1406I AACGTT 1 cut(s) 100
PspN4I GGNNCC 1 cut(s) 166
PteI GCGCGC 1 cut(s) 177
SaqAI TTAA 1 cut(s) 129
SatI GCNGC 1 cut(s) 255
Sau3AI GATC 3 cut(s) 213, 261, 265
ScrFI CCNGG 1 cut(s) 44
SetI ASST 4 cut(s) 22, 103, 117, 143
SfaNI GCATC 1 cut(s) 215
SgsI GGCGCGCC 1 cut(s) 177
SmlI CTYRAG 1 cut(s) 15
SmoI CTYRAG 1 cut(s) 15
SsiI CCGC 5 cut(s) 110, 118, 136, 193, 237
SspMI CTAG 1 cut(s) 21
StyD4I CCNGG 1 cut(s) 42
TaiI ACGT 3 cut(s) 103, 117, 143
TaqI TCGA 1 cut(s) 264
Tru1I TTAA 1 cut(s) 129
Tru9I TTAA 1 cut(s) 129
TscAI CASTG 1 cut(s) 127
TseI GCWGC 1 cut(s) 254
TspRI CASTG 1 cut(s) 127
XspI CTAG 1 cut(s) 21
ZraI GACGTC 2 cut(s) 115, 141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.