FvH4_1g07821

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000118
Physical Location & Seq
Forward (+)
4142051 .. 4142688
638 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g07821.t1

Sequence Viewer

Length: 318 bp
ATGGCGGCGGCACGGACCCCACGCTGCCAGATTTCCGTCCTTTTGCCACCGTACTGCGCCGCGCGAGGGCGCGCCTCCACCCATGCAGACTCCAGCAGCTTCCCCAACCACTTTTCATCCCCGGTGACTCCGCCGAATTTCAGTTTTCCGGCGAGATCGACTTTATTTGAAGTTTTGGGTGATCTCGCCGGAAAACTGGAAAAGAACGGACTCGCCGGGGATGGAAAATGGTCGGGGAAGCTGCTGGAGTCCGCTGGGTGGAGGCGCGCCCTCACGCAGCGTCGTACGGTGGCGAACGGACGGAAATCCGCACCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

106

Amino Acids

11.22

Weight (kDa)

10.89

Isoelectric Point (pI)

41.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000118)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01361 FvH4_1g07161 FvH4_1g07431 FvH4_1g07821 FvH4_1g08223 FvH4_1g10041 FvH4_1g12132 FvH4_1g15053 FvH4_1g18161 FvH4_1g18400 FvH4_1g18931 FvH4_1g19242 FvH4_1g19461 FvH4_1g20550 FvH4_1g21381 FvH4_1g21542 FvH4_1g22102 FvH4_1g23991 FvH4_1g24542 FvH4_1g24951 FvH4_1g24960 FvH4_1g25272 FvH4_1g25552 FvH4_1g25771 FvH4_1g28771 FvH4_1g29201 FvH4_1g29611 FvH4_2g01181 FvH4_2g02491 FvH4_2g04621 FvH4_2g04631 FvH4_2g07460 FvH4_2g08540 FvH4_2g08550 FvH4_2g09292 FvH4_2g10501 FvH4_2g12101 FvH4_2g12220 FvH4_2g12551 FvH4_2g14071 FvH4_2g14241 FvH4_2g15041 FvH4_2g15311 FvH4_2g18971 FvH4_2g19220 FvH4_2g19260 FvH4_2g19611 FvH4_2g19652 FvH4_2g20211 FvH4_2g20231 FvH4_2g21541 FvH4_2g22380 FvH4_2g27712 FvH4_2g28171 FvH4_2g29879 FvH4_2g32391 FvH4_3g02171 FvH4_3g05531 FvH4_3g09750 FvH4_3g10310 FvH4_3g10460 FvH4_3g13172 FvH4_3g15232 FvH4_3g18481 FvH4_3g18621 FvH4_3g20504 FvH4_3g20812 FvH4_3g22320 FvH4_3g22930 FvH4_3g22940 FvH4_3g23752 FvH4_3g24791 FvH4_3g26411 FvH4_3g26432 FvH4_3g27201 FvH4_3g27862 FvH4_3g28871 FvH4_3g28954 FvH4_3g29131 FvH4_3g29832 FvH4_3g29922 FvH4_3g30190 FvH4_3g32231 FvH4_3g32250 FvH4_3g33460 FvH4_3g34670 FvH4_3g36982 FvH4_3g37001 FvH4_3g38252 FvH4_3g38772 FvH4_3g40141 FvH4_3g40181 FvH4_3g42521 FvH4_4g00090 FvH4_4g00290 FvH4_4g00301 FvH4_4g00530 FvH4_4g00823 FvH4_4g02300 FvH4_4g02450 FvH4_4g03360 FvH4_4g04481 FvH4_4g04761 FvH4_4g06301 FvH4_4g06630 FvH4_4g08312 FvH4_4g08552 FvH4_4g10053 FvH4_4g11971 FvH4_4g13211 FvH4_4g13511 FvH4_4g15351 FvH4_4g16360 FvH4_4g16601 FvH4_4g18462 FvH4_4g22911 FvH4_4g23221 FvH4_4g24301 FvH4_4g24721 FvH4_4g27905 FvH4_4g28971 FvH4_4g29540 FvH4_4g30720 FvH4_4g31521 FvH4_4g33371 FvH4_4g34111 FvH4_4g35740 FvH4_5g00131 FvH4_5g02530 FvH4_5g02550 FvH4_5g02560 FvH4_5g02580 FvH4_5g03783 FvH4_5g05681 FvH4_5g05681 FvH4_5g09371 FvH4_5g09381 FvH4_5g14611 FvH4_5g15341 FvH4_5g19801 FvH4_5g20110 FvH4_5g20911 FvH4_5g22230 FvH4_5g25751 FvH4_5g26070 FvH4_5g26471 FvH4_5g27072 FvH4_5g27471 FvH4_5g27471 FvH4_5g27998 FvH4_5g28291 FvH4_5g30951 FvH4_5g31082 FvH4_5g31890 FvH4_5g32251 FvH4_5g34112 FvH4_5g37184 FvH4_5g37993 FvH4_5g38271 FvH4_6g00153 FvH4_6g00640 FvH4_6g05921 FvH4_6g08591 FvH4_6g09511 FvH4_6g10331 FvH4_6g10401 FvH4_6g14161 FvH4_6g14171 FvH4_6g18481 FvH4_6g19721 FvH4_6g19980 FvH4_6g20104 FvH4_6g20112 FvH4_6g21261 FvH4_6g21651 FvH4_6g22051 FvH4_6g23141 FvH4_6g24822 FvH4_6g25082 FvH4_6g25391 FvH4_6g25560 FvH4_6g26350 FvH4_6g27031 FvH4_6g27810 FvH4_6g27971 FvH4_6g28331 FvH4_6g29391 FvH4_6g30781 FvH4_6g32221 FvH4_6g34680 FvH4_6g36181 FvH4_6g36551 FvH4_6g37491 FvH4_6g37663 FvH4_6g39590 FvH4_6g40582 FvH4_6g43843 FvH4_6g50551 FvH4_7g00240 FvH4_7g00731 FvH4_7g01031 FvH4_7g03301 FvH4_7g08180 FvH4_7g08180 FvH4_7g10631 FvH4_7g19710 FvH4_7g23892 FvH4_7g25280 FvH4_7g25551 FvH4_7g30121 FvH4_7g31931 FvH4_7g32672 FvH4_c21g00040 FvH4_c2g00053
prunus_persica Prupe.1G448800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322451 RchiOBHm_Chr5g0015171
rosa_laevigata RLG00000003077 RLG00000018186 RLG00000030343
rosa_multiflora Rmu_co8096726.1_g000001
rosa_roxburghii Rroxscaffold_157G00438380 Rroxscaffold_1G00001730 Rroxscaffold_3G00236310
rosa_rugosa Rorug02G0236500
rosa_samantha Rh4BG247300 Rh6BG286200 Rh6CG287300 Rh7DG257500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 4 cut(s) 62, 64, 72, 267
AciI CCGC 6 cut(s) 5, 8, 60, 131, 252, 309
AcsI RAATTY 1 cut(s) 136
AfaI GTAC 2 cut(s) 53, 286
AfiI CCNNNNNNNGG 2 cut(s) 66, 258
AgsI TTSAA 1 cut(s) 170
AluBI AGCT 2 cut(s) 99, 241
AluI AGCT 2 cut(s) 99, 241
ApeKI GCWGC 4 cut(s) 24, 96, 241, 277
ApoI RAATTY 1 cut(s) 136
AscI GGCGCGCC 2 cut(s) 70, 265
AspLEI GCGC 6 cut(s) 59, 64, 72, 74, 267, 269
AspS9I GGNCC 1 cut(s) 15
AsuC2I CCSGG 2 cut(s) 122, 217
AsuHPI GGTGA 2 cut(s) 136, 191
AvaII GGWCC 1 cut(s) 15
BbvI GCAGC 4 cut(s) 11, 108, 228, 289
BccI CCATC 1 cut(s) 215
BcnI CCSGG 2 cut(s) 122, 217
BisI GCNGC 7 cut(s) 6, 9, 25, 60, 97, 242, 278
BlsI GCNGC 7 cut(s) 7, 10, 26, 61, 98, 243, 279
Bme1390I CCNGG 2 cut(s) 122, 217
Bme18I GGWCC 1 cut(s) 15
BmgT120I GGNCC 1 cut(s) 15
BmiI GGNNCC 1 cut(s) 17
BmrFI CCNGG 2 cut(s) 122, 217
BpmI CTGGAG 2 cut(s) 76, 266
BpuMI CCSGG 2 cut(s) 122, 217
BsaJI CCNNGG 2 cut(s) 120, 216
Bsc4I CCNNNNNNNGG 2 cut(s) 66, 258
Bse1I ACTGG 1 cut(s) 201
BseDI CCNNGG 2 cut(s) 120, 216
BseGI GGATG 2 cut(s) 116, 226
BseLI CCNNNNNNNGG 2 cut(s) 66, 258
BseNI ACTGG 1 cut(s) 201
BsePI GCGCGC 2 cut(s) 70, 265
BseXI GCAGC 4 cut(s) 11, 108, 228, 289
BseYI CCCAGC 1 cut(s) 254
Bsh1236I CGCG 4 cut(s) 62, 64, 72, 267
BsiSI CCGG 4 cut(s) 122, 149, 189, 216
BsiWI CGTACG 1 cut(s) 284
BslI CCNNNNNNNGG 2 cut(s) 66, 258
Bsp143I GATC 2 cut(s) 155, 181
BspACI CCGC 6 cut(s) 5, 8, 60, 131, 252, 309
BspFNI CGCG 4 cut(s) 62, 64, 72, 267
BspLI GGNNCC 1 cut(s) 17
BsrI ACTGG 1 cut(s) 201
BssECI CCNNGG 2 cut(s) 120, 216
BssHII GCGCGC 2 cut(s) 70, 265
BssMI GATC 2 cut(s) 155, 181
Bst4CI ACNGT 3 cut(s) 51, 289, 315
BstC8I GCNNGC 2 cut(s) 72, 267
BstF5I GGATG 2 cut(s) 116, 226
BstFNI CGCG 4 cut(s) 62, 64, 72, 267
BstHHI GCGC 6 cut(s) 59, 64, 72, 74, 267, 269
BstKTI GATC 2 cut(s) 158, 184
BstMBI GATC 2 cut(s) 155, 181
BstSCI CCNGG 2 cut(s) 120, 215
BstUI CGCG 4 cut(s) 62, 64, 72, 267
BstV1I GCAGC 4 cut(s) 11, 108, 228, 289
BtsCI GGATG 2 cut(s) 116, 226
Cac8I GCNNGC 2 cut(s) 72, 267
CfoI GCGC 6 cut(s) 59, 64, 72, 74, 267, 269
Cfr13I GGNCC 1 cut(s) 15
CseI GACGC 1 cut(s) 269
Csp6I GTAC 2 cut(s) 52, 285
CviAII CATG 1 cut(s) 83
CviJI RGCY 2 cut(s) 99, 241
CviKI_1 RGCY 2 cut(s) 99, 241
CviQI GTAC 2 cut(s) 52, 285
DpnI GATC 2 cut(s) 157, 183
DpnII GATC 2 cut(s) 155, 181
EciI GGCGGA 1 cut(s) 120
Eco47I GGWCC 1 cut(s) 15
FaeI CATG 1 cut(s) 86
FaiI YATR 1 cut(s) 84
FatI CATG 1 cut(s) 82
Fnu4HI GCNGC 7 cut(s) 6, 9, 25, 60, 97, 242, 278
FokI GGATG 2 cut(s) 103, 233
Fsp4HI GCNGC 7 cut(s) 6, 9, 25, 60, 97, 242, 278
GlaI GCGC 6 cut(s) 58, 63, 71, 73, 266, 268
GluI GCNGC 7 cut(s) 6, 9, 25, 60, 97, 242, 278
GsaI CCCAGC 1 cut(s) 258
GsuI CTGGAG 2 cut(s) 76, 266
HapII CCGG 4 cut(s) 122, 149, 189, 216
HgaI GACGC 1 cut(s) 269
HhaI GCGC 6 cut(s) 59, 64, 72, 74, 267, 269
Hin1II CATG 1 cut(s) 86
Hin6I GCGC 6 cut(s) 57, 62, 70, 72, 265, 267
HinP1I GCGC 6 cut(s) 57, 62, 70, 72, 265, 267
HinfI GANTC 4 cut(s) 89, 127, 210, 248
HpaII CCGG 4 cut(s) 122, 149, 189, 216
HphI GGTGA 2 cut(s) 136, 191
Hpy99I CGWCG 1 cut(s) 285
HpyCH4III ACNGT 3 cut(s) 51, 289, 315
HpyCH4V TGCA 1 cut(s) 86
Hsp92II CATG 1 cut(s) 86
HspAI GCGC 6 cut(s) 57, 62, 70, 72, 265, 267
Kzo9I GATC 2 cut(s) 155, 181
LpnPI CCDG 9 cut(s) 41, 106, 135, 162, 182, 202, 229, 230, 240
Lsp1109I GCAGC 4 cut(s) 11, 108, 228, 289
MaeIII GTNAC 1 cut(s) 124
MalI GATC 2 cut(s) 157, 183
MboI GATC 2 cut(s) 155, 181
MluCI AATT 1 cut(s) 136
MlyI GAGTC 4 cut(s) 83, 121, 204, 257
MnlI CCTC 4 cut(s) 59, 85, 255, 281
MspA1I CMGCKG 1 cut(s) 254
MspI CCGG 4 cut(s) 122, 149, 189, 216
MspR9I CCNGG 2 cut(s) 122, 217
MteI GCGCNGCGC 1 cut(s) 60
MvnI CGCG 4 cut(s) 62, 64, 72, 267
NciI CCSGG 2 cut(s) 122, 217
NdeII GATC 2 cut(s) 155, 181
NlaIII CATG 1 cut(s) 86
NlaIV GGNNCC 1 cut(s) 17
NmuCI GTSAC 1 cut(s) 124
PalAI GGCGCGCC 2 cut(s) 70, 265
PauI GCGCGC 2 cut(s) 70, 265
Pfl23II CGTACG 1 cut(s) 284
PkrI GCNGC 7 cut(s) 7, 10, 26, 61, 98, 243, 279
PleI GAGTC 4 cut(s) 83, 121, 204, 256
PpsI GAGTC 4 cut(s) 83, 121, 204, 256
PspFI CCCAGC 1 cut(s) 254
PspLI CGTACG 1 cut(s) 284
PspN4I GGNNCC 1 cut(s) 17
PspPI GGNCC 1 cut(s) 15
PteI GCGCGC 2 cut(s) 70, 265
RsaI GTAC 2 cut(s) 53, 286
RsaNI GTAC 2 cut(s) 52, 285
SatI GCNGC 7 cut(s) 6, 9, 25, 60, 97, 242, 278
Sau3AI GATC 2 cut(s) 155, 181
Sau96I GGNCC 1 cut(s) 15
SchI GAGTC 4 cut(s) 83, 121, 204, 257
ScrFI CCNGG 2 cut(s) 122, 217
SetI ASST 2 cut(s) 101, 243
SgsI GGCGCGCC 2 cut(s) 70, 265
SinI GGWCC 1 cut(s) 15
Sse9I AATT 1 cut(s) 136
SsiI CCGC 6 cut(s) 5, 8, 60, 131, 252, 309
StyD4I CCNGG 2 cut(s) 120, 215
TaaI ACNGT 3 cut(s) 51, 289, 315
TaqI TCGA 1 cut(s) 158
TasI AATT 1 cut(s) 136
TauI GCSGC 3 cut(s) 8, 11, 62
TseFI GTSAC 1 cut(s) 124
TseI GCWGC 4 cut(s) 24, 96, 241, 277
Tsp45I GTSAC 1 cut(s) 124
TspDTI ATGAA 1 cut(s) 105
TspGWI ACGGA 5 cut(s) 25, 28, 222, 312, 316
VpaK11BI GGWCC 1 cut(s) 15
XapI RAATTY 1 cut(s) 136
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.