FvH4_1g24542

Ethylene-responsive protein kinase Le-CTR1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000118
Physical Location & Seq
Reverse (-)
16386304 .. 16386967
664 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g24542.t1

Sequence Viewer

Length: 360 bp
ATGATATATAATAGGAATAATTATTGGCCCACACTCCATCAACGTCGACTGGCTAGTCCAGGCGACTTGGTGAGCCTCAAATGCCTAAGGATCTCTTCGTCGGAGTTTGACGGCTTGCCGCTGCACAAGTTCAAGGGGCTGAAGGAGCTGGAGCTCTCCAAAGTCACGTCTCGATGCTTGGCGGTTCCGATTCTGATCCAGGGCGTCGGGCTCAAGCTCCTGACAAAGCTATCGGTATGTTATTTCTCTATAACTTTTCTACCGTCGGAGATTTGCTGCTTGAAGAGCTTGGAGTATCTGGACCTTTTGTTCAACAAGATGAAGACTTTGCCTGGAGAAATTGGGAATTTGAATGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EDR1 LRR_8 Pkinase

Protein Analysis

120

Amino Acids

13.43

Weight (kDa)

9.2

Isoelectric Point (pI)

45.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 29 - 118 1.9e-06 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000118)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01361 FvH4_1g07161 FvH4_1g07431 FvH4_1g07821 FvH4_1g08223 FvH4_1g10041 FvH4_1g12132 FvH4_1g15053 FvH4_1g18161 FvH4_1g18400 FvH4_1g18931 FvH4_1g19242 FvH4_1g19461 FvH4_1g20550 FvH4_1g21381 FvH4_1g21542 FvH4_1g22102 FvH4_1g23991 FvH4_1g24542 FvH4_1g24951 FvH4_1g24960 FvH4_1g25272 FvH4_1g25552 FvH4_1g25771 FvH4_1g28771 FvH4_1g29201 FvH4_1g29611 FvH4_2g01181 FvH4_2g02491 FvH4_2g04621 FvH4_2g04631 FvH4_2g07460 FvH4_2g08540 FvH4_2g08550 FvH4_2g09292 FvH4_2g10501 FvH4_2g12101 FvH4_2g12220 FvH4_2g12551 FvH4_2g14071 FvH4_2g14241 FvH4_2g15041 FvH4_2g15311 FvH4_2g18971 FvH4_2g19220 FvH4_2g19260 FvH4_2g19611 FvH4_2g19652 FvH4_2g20211 FvH4_2g20231 FvH4_2g21541 FvH4_2g22380 FvH4_2g27712 FvH4_2g28171 FvH4_2g29879 FvH4_2g32391 FvH4_3g02171 FvH4_3g05531 FvH4_3g09750 FvH4_3g10310 FvH4_3g10460 FvH4_3g13172 FvH4_3g15232 FvH4_3g18481 FvH4_3g18621 FvH4_3g20504 FvH4_3g20812 FvH4_3g22320 FvH4_3g22930 FvH4_3g22940 FvH4_3g23752 FvH4_3g24791 FvH4_3g26411 FvH4_3g26432 FvH4_3g27201 FvH4_3g27862 FvH4_3g28871 FvH4_3g28954 FvH4_3g29131 FvH4_3g29832 FvH4_3g29922 FvH4_3g30190 FvH4_3g32231 FvH4_3g32250 FvH4_3g33460 FvH4_3g34670 FvH4_3g36982 FvH4_3g37001 FvH4_3g38252 FvH4_3g38772 FvH4_3g40141 FvH4_3g40181 FvH4_3g42521 FvH4_4g00090 FvH4_4g00290 FvH4_4g00301 FvH4_4g00530 FvH4_4g00823 FvH4_4g02300 FvH4_4g02450 FvH4_4g03360 FvH4_4g04481 FvH4_4g04761 FvH4_4g06301 FvH4_4g06630 FvH4_4g08312 FvH4_4g08552 FvH4_4g10053 FvH4_4g11971 FvH4_4g13211 FvH4_4g13511 FvH4_4g15351 FvH4_4g16360 FvH4_4g16601 FvH4_4g18462 FvH4_4g22911 FvH4_4g23221 FvH4_4g24301 FvH4_4g24721 FvH4_4g27905 FvH4_4g28971 FvH4_4g29540 FvH4_4g30720 FvH4_4g31521 FvH4_4g33371 FvH4_4g34111 FvH4_4g35740 FvH4_5g00131 FvH4_5g02530 FvH4_5g02550 FvH4_5g02560 FvH4_5g02580 FvH4_5g03783 FvH4_5g05681 FvH4_5g05681 FvH4_5g09371 FvH4_5g09381 FvH4_5g14611 FvH4_5g15341 FvH4_5g19801 FvH4_5g20110 FvH4_5g20911 FvH4_5g22230 FvH4_5g25751 FvH4_5g26070 FvH4_5g26471 FvH4_5g27072 FvH4_5g27471 FvH4_5g27471 FvH4_5g27998 FvH4_5g28291 FvH4_5g30951 FvH4_5g31082 FvH4_5g31890 FvH4_5g32251 FvH4_5g34112 FvH4_5g37184 FvH4_5g37993 FvH4_5g38271 FvH4_6g00153 FvH4_6g00640 FvH4_6g05921 FvH4_6g08591 FvH4_6g09511 FvH4_6g10331 FvH4_6g10401 FvH4_6g14161 FvH4_6g14171 FvH4_6g18481 FvH4_6g19721 FvH4_6g19980 FvH4_6g20104 FvH4_6g20112 FvH4_6g21261 FvH4_6g21651 FvH4_6g22051 FvH4_6g23141 FvH4_6g24822 FvH4_6g25082 FvH4_6g25391 FvH4_6g25560 FvH4_6g26350 FvH4_6g27031 FvH4_6g27810 FvH4_6g27971 FvH4_6g28331 FvH4_6g29391 FvH4_6g30781 FvH4_6g32221 FvH4_6g34680 FvH4_6g36181 FvH4_6g36551 FvH4_6g37491 FvH4_6g37663 FvH4_6g39590 FvH4_6g40582 FvH4_6g43843 FvH4_6g50551 FvH4_7g00240 FvH4_7g00731 FvH4_7g01031 FvH4_7g03301 FvH4_7g08180 FvH4_7g08180 FvH4_7g10631 FvH4_7g19710 FvH4_7g23892 FvH4_7g25280 FvH4_7g25551 FvH4_7g30121 FvH4_7g31931 FvH4_7g32672 FvH4_c21g00040 FvH4_c2g00053
prunus_persica Prupe.1G448800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322451 RchiOBHm_Chr5g0015171
rosa_laevigata RLG00000003077 RLG00000018186 RLG00000030343
rosa_multiflora Rmu_co8096726.1_g000001
rosa_roxburghii Rroxscaffold_157G00438380 Rroxscaffold_1G00001730 Rroxscaffold_3G00236310
rosa_rugosa Rorug02G0236500
rosa_samantha Rh4BG247300 Rh6BG286200 Rh6CG287300 Rh7DG257500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 54
AccI GTMKAC 1 cut(s) 46
AciI CCGC 2 cut(s) 119, 182
AclWI GGATC 2 cut(s) 98, 190
AcsI RAATTY 1 cut(s) 346
AcuI CTGAAG 1 cut(s) 161
AcyI GRCGYC 1 cut(s) 204
AgsI TTSAA 4 cut(s) 133, 283, 313, 352
AjiI CACGTC 1 cut(s) 168
AjnI CCWGG 3 cut(s) 58, 198, 331
AloI GAACNNNNNNTCC 2 cut(s) 293, 325
AluBI AGCT 5 cut(s) 148, 154, 217, 229, 288
AluI AGCT 5 cut(s) 148, 154, 217, 229, 288
Alw21I GWGCWC 1 cut(s) 156
Alw26I GTCTC 1 cut(s) 174
AlwI GGATC 2 cut(s) 98, 190
AoxI GGCC 1 cut(s) 26
ApeKI GCWGC 2 cut(s) 121, 276
ApoI RAATTY 1 cut(s) 346
AspS9I GGNCC 2 cut(s) 27, 301
AsuHPI GGTGA 1 cut(s) 82
AvaII GGWCC 1 cut(s) 301
AxyI CCTNAGG 1 cut(s) 86
BanII GRGCYC 2 cut(s) 156, 213
BbsI GAAGAC 1 cut(s) 329
Bbv12I GWGCWC 1 cut(s) 156
BbvI GCAGC 2 cut(s) 108, 263
BccI CCATC 1 cut(s) 45
BceAI ACGGC 1 cut(s) 127
BciT130I CCWGG 3 cut(s) 60, 200, 333
BcoDI GTCTC 1 cut(s) 174
BfaI CTAG 1 cut(s) 54
BisI GCNGC 3 cut(s) 119, 122, 277
BlsI GCNGC 3 cut(s) 120, 123, 278
Bme1390I CCNGG 3 cut(s) 60, 200, 333
Bme18I GGWCC 1 cut(s) 301
BmgBI CACGTC 1 cut(s) 168
BmgT120I GGNCC 2 cut(s) 27, 301
BmiI GGNNCC 1 cut(s) 186
BmrFI CCNGG 3 cut(s) 60, 200, 333
BmsI GCATC 1 cut(s) 164
BpiI GAAGAC 1 cut(s) 329
BpmI CTGGAG 2 cut(s) 170, 354
BpuEI CTTGAG 1 cut(s) 197
BsaBI GATNNNNATC 1 cut(s) 194
BsaHI GRCGYC 1 cut(s) 204
BsaJI CCNNGG 1 cut(s) 199
Bse1I ACTGG 1 cut(s) 54
Bse21I CCTNAGG 1 cut(s) 86
Bse8I GATNNNNATC 1 cut(s) 194
BseBI CCWGG 3 cut(s) 60, 200, 333
BseDI CCNNGG 1 cut(s) 199
BseJI GATNNNNATC 1 cut(s) 194
BseNI ACTGG 1 cut(s) 54
BseXI GCAGC 2 cut(s) 108, 263
BsgI GTGCAG 1 cut(s) 107
BshFI GGCC 1 cut(s) 28
BsiHKAI GWGCWC 1 cut(s) 156
BsmAI GTCTC 1 cut(s) 174
BsmBI CGTCTC 1 cut(s) 174
BsmI GAATGC 1 cut(s) 358
BsnI GGCC 1 cut(s) 28
Bsp1286I GDGCHC 2 cut(s) 156, 213
Bsp143I GATC 2 cut(s) 90, 195
BspACI CCGC 2 cut(s) 119, 182
BspANI GGCC 1 cut(s) 28
BspLI GGNNCC 1 cut(s) 186
BspPI GGATC 2 cut(s) 98, 190
BspQI GCTCTTC 1 cut(s) 278
BsrI ACTGG 1 cut(s) 54
BssECI CCNNGG 1 cut(s) 199
BssMI GATC 2 cut(s) 90, 195
BssNI GRCGYC 1 cut(s) 204
Bst2UI CCWGG 3 cut(s) 60, 200, 333
Bst4CI ACNGT 1 cut(s) 264
Bst6I CTCTTC 2 cut(s) 100, 278
BstACI GRCGYC 1 cut(s) 204
BstC8I GCNNGC 1 cut(s) 116
BstDEI CTNAG 2 cut(s) 86, 357
BstKTI GATC 2 cut(s) 93, 198
BstMAI GTCTC 1 cut(s) 174
BstMBI GATC 2 cut(s) 90, 195
BstMWI GCNNNNNNNGC 3 cut(s) 81, 145, 285
BstNI CCWGG 3 cut(s) 60, 200, 333
BstSCI CCNGG 3 cut(s) 58, 198, 331
BstV1I GCAGC 2 cut(s) 108, 263
BstV2I GAAGAC 1 cut(s) 329
BstX2I RGATCY 1 cut(s) 90
BstYI RGATCY 1 cut(s) 90
Bsu36I CCTNAGG 1 cut(s) 86
BsuRI GGCC 1 cut(s) 28
BtrI CACGTC 1 cut(s) 168
Cac8I GCNNGC 1 cut(s) 116
Cfr13I GGNCC 2 cut(s) 27, 301
CseI GACGC 1 cut(s) 193
DdeI CTNAG 2 cut(s) 86, 357
DpnI GATC 2 cut(s) 92, 197
DpnII GATC 2 cut(s) 90, 195
DrdI GACNNNNNNGTC 1 cut(s) 54
DseDI GACNNNNNNGTC 1 cut(s) 54
Eam1104I CTCTTC 2 cut(s) 100, 278
EarI CTCTTC 2 cut(s) 100, 278
Ecl136II GAGCTC 1 cut(s) 154
Eco24I GRGCYC 2 cut(s) 156, 213
Eco47I GGWCC 1 cut(s) 301
Eco53kI GAGCTC 1 cut(s) 154
Eco57I CTGAAG 1 cut(s) 161
Eco81I CCTNAGG 1 cut(s) 86
EcoICRI GAGCTC 1 cut(s) 154
EcoRII CCWGG 3 cut(s) 58, 198, 331
EcoT38I GRGCYC 2 cut(s) 156, 213
Esp3I CGTCTC 1 cut(s) 174
FaiI YATR 4 cut(s) 7, 9, 238, 251
FalI AAGNNNNNCTT 2 cut(s) 79, 111
FblI GTMKAC 1 cut(s) 46
Fnu4HI GCNGC 3 cut(s) 119, 122, 277
FriOI GRGCYC 2 cut(s) 156, 213
Fsp4HI GCNGC 3 cut(s) 119, 122, 277
FspBI CTAG 1 cut(s) 54
GluI GCNGC 3 cut(s) 119, 122, 277
GsuI CTGGAG 2 cut(s) 170, 354
HaeIII GGCC 1 cut(s) 28
HgaI GACGC 1 cut(s) 193
Hin1I GRCGYC 1 cut(s) 204
HincII GTYRAC 1 cut(s) 47
HindII GTYRAC 1 cut(s) 47
HinfI GANTC 1 cut(s) 190
HphI GGTGA 1 cut(s) 82
Hpy166II GTNNAC 1 cut(s) 47
Hpy188I TCNGA 4 cut(s) 103, 189, 195, 268
Hpy188III TCNNGA 3 cut(s) 171, 220, 299
Hpy8I GTNNAC 1 cut(s) 47
Hpy99I CGWCG 4 cut(s) 48, 103, 209, 268
HpyAV CCTTC 1 cut(s) 136
HpyCH4III ACNGT 1 cut(s) 264
HpyCH4IV ACGT 2 cut(s) 43, 167
HpyCH4V TGCA 1 cut(s) 124
HpyF10VI GCNNNNNNNGC 3 cut(s) 81, 145, 285
HpyF3I CTNAG 2 cut(s) 86, 357
HpySE526I ACGT 2 cut(s) 43, 167
Hsp92I GRCGYC 1 cut(s) 204
Kzo9I GATC 2 cut(s) 90, 195
LguI GCTCTTC 1 cut(s) 278
LmnI GCTCC 3 cut(s) 145, 151, 222
Lsp1109I GCAGC 2 cut(s) 108, 263
LweI GCATC 1 cut(s) 164
MaeI CTAG 1 cut(s) 54
MaeII ACGT 2 cut(s) 43, 167
MaeIII GTNAC 1 cut(s) 163
MalI GATC 2 cut(s) 92, 197
MboI GATC 2 cut(s) 90, 195
MboII GAAGA 3 cut(s) 87, 295, 334
MflI RGATCY 1 cut(s) 90
MhlI GDGCHC 2 cut(s) 156, 213
MluCI AATT 3 cut(s) 19, 339, 346
MmeI TCCRAC 2 cut(s) 81, 246
MnlI CCTC 1 cut(s) 86
MspA1I CMGCKG 1 cut(s) 121
MspR9I CCNGG 3 cut(s) 60, 200, 333
Mva1269I GAATGC 1 cut(s) 358
MvaI CCWGG 3 cut(s) 60, 200, 333
MwoI GCNNNNNNNGC 3 cut(s) 81, 145, 285
NdeII GATC 2 cut(s) 90, 195
NlaIV GGNNCC 1 cut(s) 186
NmuCI GTSAC 1 cut(s) 163
PciSI GCTCTTC 1 cut(s) 278
PctI GAATGC 1 cut(s) 358
PfeI GAWTC 1 cut(s) 190
PkrI GCNGC 3 cut(s) 120, 123, 278
Psp124BI GAGCTC 1 cut(s) 156
Psp6I CCWGG 3 cut(s) 58, 198, 331
PspGI CCWGG 3 cut(s) 58, 198, 331
PspN4I GGNNCC 1 cut(s) 186
PspPI GGNCC 2 cut(s) 27, 301
PsuI RGATCY 1 cut(s) 90
SacI GAGCTC 1 cut(s) 156
SalI GTCGAC 1 cut(s) 45
SapI GCTCTTC 1 cut(s) 278
SatI GCNGC 3 cut(s) 119, 122, 277
Sau3AI GATC 2 cut(s) 90, 195
Sau96I GGNCC 2 cut(s) 27, 301
ScrFI CCNGG 3 cut(s) 60, 200, 333
SduI GDGCHC 2 cut(s) 156, 213
SetI ASST 8 cut(s) 46, 150, 156, 170, 219, 231, 290, 306
SfaNI GCATC 1 cut(s) 164
SinI GGWCC 1 cut(s) 301
SmlI CTYRAG 1 cut(s) 212
SmoI CTYRAG 1 cut(s) 212
Sse9I AATT 3 cut(s) 19, 339, 346
SsiI CCGC 2 cut(s) 119, 182
SspMI CTAG 1 cut(s) 54
SstI GAGCTC 1 cut(s) 156
StyD4I CCNGG 3 cut(s) 58, 198, 331
TaaI ACNGT 1 cut(s) 264
TaiI ACGT 2 cut(s) 46, 170
TaqI TCGA 2 cut(s) 46, 172
TasI AATT 3 cut(s) 19, 339, 346
TauI GCSGC 1 cut(s) 121
TfiI GAWTC 1 cut(s) 190
TseFI GTSAC 1 cut(s) 163
TseI GCWGC 2 cut(s) 121, 276
Tsp45I GTSAC 1 cut(s) 163
TspDTI ATGAA 1 cut(s) 335
VpaK11BI GGWCC 1 cut(s) 301
XapI RAATTY 1 cut(s) 346
XmiI GTMKAC 1 cut(s) 46
XspI CTAG 1 cut(s) 54
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.