FvH4_2g07460

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000118
Physical Location & Seq
Reverse (-)
6207760 .. 6218755
10996 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g07460.t1

Sequence Viewer

Length: 447 bp
ATGGTGGAGATGAGAAGAAAGGGAGTTGAAGAACCTTGGCCAACCCATATTTGCGCAACTCAAGAACAGAGAATGTCTAGATCAAAGAAGGACGTCCGCACGCCCTTAAAGTGCGGACGTCCCTCAGTTTGCCACCGTATGGCGCCGGCGAGGGCGCGCCTCCACCCCAGCAGCCTCCAGCAGCGTGATCTCGCCGGAAAATTGGAATTCAGCGGACTCGCCAGGGAGGAAAAGTGGTCGGGGACGCTGCTGGAGTCCGCTGGGGTGGAGGCGCACCCTCGCCGGCGCCGTACGTATATCTCCTTTCCCTTGAGATTGCTCACTATGCCCCGTGATATCTCCGCAAAATTACGCGCTCTGATACCAGCTATGGCGGATCTAACCGATGCTCAAAATATCAAGAGTTTAGCTTCTGATAAAAGATCAAGTCTAGTAGCAATAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

149

Amino Acids

16.73

Weight (kDa)

10.48

Isoelectric Point (pI)

69.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000118)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01361 FvH4_1g07161 FvH4_1g07431 FvH4_1g07821 FvH4_1g08223 FvH4_1g10041 FvH4_1g12132 FvH4_1g15053 FvH4_1g18161 FvH4_1g18400 FvH4_1g18931 FvH4_1g19242 FvH4_1g19461 FvH4_1g20550 FvH4_1g21381 FvH4_1g21542 FvH4_1g22102 FvH4_1g23991 FvH4_1g24542 FvH4_1g24951 FvH4_1g24960 FvH4_1g25272 FvH4_1g25552 FvH4_1g25771 FvH4_1g28771 FvH4_1g29201 FvH4_1g29611 FvH4_2g01181 FvH4_2g02491 FvH4_2g04621 FvH4_2g04631 FvH4_2g07460 FvH4_2g08540 FvH4_2g08550 FvH4_2g09292 FvH4_2g10501 FvH4_2g12101 FvH4_2g12220 FvH4_2g12551 FvH4_2g14071 FvH4_2g14241 FvH4_2g15041 FvH4_2g15311 FvH4_2g18971 FvH4_2g19220 FvH4_2g19260 FvH4_2g19611 FvH4_2g19652 FvH4_2g20211 FvH4_2g20231 FvH4_2g21541 FvH4_2g22380 FvH4_2g27712 FvH4_2g28171 FvH4_2g29879 FvH4_2g32391 FvH4_3g02171 FvH4_3g05531 FvH4_3g09750 FvH4_3g10310 FvH4_3g10460 FvH4_3g13172 FvH4_3g15232 FvH4_3g18481 FvH4_3g18621 FvH4_3g20504 FvH4_3g20812 FvH4_3g22320 FvH4_3g22930 FvH4_3g22940 FvH4_3g23752 FvH4_3g24791 FvH4_3g26411 FvH4_3g26432 FvH4_3g27201 FvH4_3g27862 FvH4_3g28871 FvH4_3g28954 FvH4_3g29131 FvH4_3g29832 FvH4_3g29922 FvH4_3g30190 FvH4_3g32231 FvH4_3g32250 FvH4_3g33460 FvH4_3g34670 FvH4_3g36982 FvH4_3g37001 FvH4_3g38252 FvH4_3g38772 FvH4_3g40141 FvH4_3g40181 FvH4_3g42521 FvH4_4g00090 FvH4_4g00290 FvH4_4g00301 FvH4_4g00530 FvH4_4g00823 FvH4_4g02300 FvH4_4g02450 FvH4_4g03360 FvH4_4g04481 FvH4_4g04761 FvH4_4g06301 FvH4_4g06630 FvH4_4g08312 FvH4_4g08552 FvH4_4g10053 FvH4_4g11971 FvH4_4g13211 FvH4_4g13511 FvH4_4g15351 FvH4_4g16360 FvH4_4g16601 FvH4_4g18462 FvH4_4g22911 FvH4_4g23221 FvH4_4g24301 FvH4_4g24721 FvH4_4g27905 FvH4_4g28971 FvH4_4g29540 FvH4_4g30720 FvH4_4g31521 FvH4_4g33371 FvH4_4g34111 FvH4_4g35740 FvH4_5g00131 FvH4_5g02530 FvH4_5g02550 FvH4_5g02560 FvH4_5g02580 FvH4_5g03783 FvH4_5g05681 FvH4_5g05681 FvH4_5g09371 FvH4_5g09381 FvH4_5g14611 FvH4_5g15341 FvH4_5g19801 FvH4_5g20110 FvH4_5g20911 FvH4_5g22230 FvH4_5g25751 FvH4_5g26070 FvH4_5g26471 FvH4_5g27072 FvH4_5g27471 FvH4_5g27471 FvH4_5g27998 FvH4_5g28291 FvH4_5g30951 FvH4_5g31082 FvH4_5g31890 FvH4_5g32251 FvH4_5g34112 FvH4_5g37184 FvH4_5g37993 FvH4_5g38271 FvH4_6g00153 FvH4_6g00640 FvH4_6g05921 FvH4_6g08591 FvH4_6g09511 FvH4_6g10331 FvH4_6g10401 FvH4_6g14161 FvH4_6g14171 FvH4_6g18481 FvH4_6g19721 FvH4_6g19980 FvH4_6g20104 FvH4_6g20112 FvH4_6g21261 FvH4_6g21651 FvH4_6g22051 FvH4_6g23141 FvH4_6g24822 FvH4_6g25082 FvH4_6g25391 FvH4_6g25560 FvH4_6g26350 FvH4_6g27031 FvH4_6g27810 FvH4_6g27971 FvH4_6g28331 FvH4_6g29391 FvH4_6g30781 FvH4_6g32221 FvH4_6g34680 FvH4_6g36181 FvH4_6g36551 FvH4_6g37491 FvH4_6g37663 FvH4_6g39590 FvH4_6g40582 FvH4_6g43843 FvH4_6g50551 FvH4_7g00240 FvH4_7g00731 FvH4_7g01031 FvH4_7g03301 FvH4_7g08180 FvH4_7g08180 FvH4_7g10631 FvH4_7g19710 FvH4_7g23892 FvH4_7g25280 FvH4_7g25551 FvH4_7g30121 FvH4_7g31931 FvH4_7g32672 FvH4_c21g00040 FvH4_c2g00053
prunus_persica Prupe.1G448800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322451 RchiOBHm_Chr5g0015171
rosa_laevigata RLG00000003077 RLG00000018186 RLG00000030343
rosa_multiflora Rmu_co8096726.1_g000001
rosa_roxburghii Rroxscaffold_157G00438380 Rroxscaffold_1G00001730 Rroxscaffold_3G00236310
rosa_rugosa Rorug02G0236500
rosa_samantha Rh4BG247300 Rh6BG286200 Rh6CG287300 Rh7DG257500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 96, 121
Acc16I TGCGCA 1 cut(s) 55
AccB1I GGYRCC 2 cut(s) 142, 285
AccB7I CCANNNNNTGG 1 cut(s) 139
AccII CGCG 2 cut(s) 157, 354
AciI CCGC 6 cut(s) 97, 114, 213, 258, 342, 374
AclWI GGATC 1 cut(s) 384
AcoI YGGCCR 1 cut(s) 38
AcsI RAATTY 1 cut(s) 206
AcyI GRCGYC 4 cut(s) 93, 118, 143, 286
AfaI GTAC 1 cut(s) 292
AfiI CCNNNNNNNGG 1 cut(s) 139
AgsI TTSAA 1 cut(s) 29
AjnI CCWGG 1 cut(s) 221
AluBI AGCT 2 cut(s) 368, 410
AluI AGCT 2 cut(s) 368, 410
AlwI GGATC 1 cut(s) 384
AoxI GGCC 1 cut(s) 38
ApeKI GCWGC 3 cut(s) 171, 181, 247
ApoI RAATTY 1 cut(s) 206
AscI GGCGCGCC 1 cut(s) 155
AspLEI GCGC 7 cut(s) 56, 145, 157, 159, 274, 288, 356
BalI TGGCCA 1 cut(s) 40
BanI GGYRCC 2 cut(s) 142, 285
BbvI GCAGC 3 cut(s) 183, 193, 234
BceAI ACGGC 1 cut(s) 273
BciT130I CCWGG 1 cut(s) 223
BfaI CTAG 2 cut(s) 78, 431
BfoI RGCGCY 2 cut(s) 146, 289
BisI GCNGC 3 cut(s) 172, 182, 248
BlsI GCNGC 3 cut(s) 173, 183, 249
Bme1390I CCNGG 1 cut(s) 223
BmiI GGNNCC 2 cut(s) 144, 287
BmrFI CCNGG 1 cut(s) 223
BmsI GCATC 1 cut(s) 376
BpmI CTGGAG 2 cut(s) 161, 272
BpuEI CTTGAG 2 cut(s) 45, 331
BsaAI YACGTR 1 cut(s) 294
BsaHI GRCGYC 4 cut(s) 93, 118, 143, 286
BsaJI CCNNGG 2 cut(s) 35, 222
BsaXI ACNNNNNCTCC 2 cut(s) 218, 248
Bsc4I CCNNNNNNNGG 1 cut(s) 139
Bse118I RCCGGY 2 cut(s) 145, 282
BseBI CCWGG 1 cut(s) 223
BseDI CCNNGG 2 cut(s) 35, 222
BseLI CCNNNNNNNGG 1 cut(s) 139
BseMII CTCAG 1 cut(s) 138
BsePI GCGCGC 1 cut(s) 155
BseXI GCAGC 3 cut(s) 183, 193, 234
BseYI CCCAGC 2 cut(s) 167, 260
Bsh1236I CGCG 2 cut(s) 157, 354
BshFI GGCC 1 cut(s) 40
BshNI GGYRCC 2 cut(s) 142, 285
BsiSI CCGG 3 cut(s) 146, 195, 283
BsiWI CGTACG 1 cut(s) 290
BslFI GGGAC 2 cut(s) 105, 256
BslI CCNNNNNNNGG 1 cut(s) 139
BsmFI GGGAC 2 cut(s) 105, 256
BsnI GGCC 1 cut(s) 40
Bsp143I GATC 4 cut(s) 80, 187, 376, 422
BspACI CCGC 6 cut(s) 97, 114, 213, 258, 342, 374
BspANI GGCC 1 cut(s) 40
BspCNI CTCAG 1 cut(s) 137
BspFNI CGCG 2 cut(s) 157, 354
BspLI GGNNCC 2 cut(s) 144, 287
BspPI GGATC 1 cut(s) 384
BspT107I GGYRCC 2 cut(s) 142, 285
BsrFI RCCGGY 2 cut(s) 145, 282
BssAI RCCGGY 2 cut(s) 145, 282
BssECI CCNNGG 2 cut(s) 35, 222
BssHII GCGCGC 1 cut(s) 155
BssMI GATC 4 cut(s) 80, 187, 376, 422
BssNI GRCGYC 4 cut(s) 93, 118, 143, 286
BssT1I CCWWGG 1 cut(s) 35
Bst2UI CCWGG 1 cut(s) 223
Bst4CI ACNGT 1 cut(s) 137
BstACI GRCGYC 4 cut(s) 93, 118, 143, 286
BstBAI YACGTR 1 cut(s) 294
BstC8I GCNNGC 4 cut(s) 101, 147, 157, 284
BstDEI CTNAG 1 cut(s) 124
BstFNI CGCG 2 cut(s) 157, 354
BstH2I RGCGCY 2 cut(s) 146, 289
BstHHI GCGC 7 cut(s) 56, 145, 157, 159, 274, 288, 356
BstKTI GATC 4 cut(s) 83, 190, 379, 425
BstMBI GATC 4 cut(s) 80, 187, 376, 422
BstMWI GCNNNNNNNGC 1 cut(s) 325
BstNI CCWGG 1 cut(s) 223
BstSCI CCNGG 1 cut(s) 221
BstSNI TACGTA 1 cut(s) 294
BstUI CGCG 2 cut(s) 157, 354
BstV1I GCAGC 3 cut(s) 183, 193, 234
BstX2I RGATCY 1 cut(s) 376
BstYI RGATCY 1 cut(s) 376
BsuRI GGCC 1 cut(s) 40
Cac8I GCNNGC 4 cut(s) 101, 147, 157, 284
CfoI GCGC 7 cut(s) 56, 145, 157, 159, 274, 288, 356
Cfr10I RCCGGY 2 cut(s) 145, 282
CseI GACGC 1 cut(s) 253
Csp6I GTAC 1 cut(s) 291
CviJI RGCY 4 cut(s) 40, 174, 368, 410
CviKI_1 RGCY 4 cut(s) 40, 174, 368, 410
CviQI GTAC 1 cut(s) 291
DdeI CTNAG 1 cut(s) 124
DinI GGCGCC 2 cut(s) 144, 287
DpnI GATC 4 cut(s) 82, 189, 378, 424
DpnII GATC 4 cut(s) 80, 187, 376, 422
EaeI YGGCCR 1 cut(s) 38
EciI GGCGGA 1 cut(s) 389
Eco105I TACGTA 1 cut(s) 294
Eco130I CCWWGG 1 cut(s) 35
Eco32I GATATC 1 cut(s) 337
EcoRI GAATTC 1 cut(s) 206
EcoRII CCWGG 1 cut(s) 221
EcoRV GATATC 1 cut(s) 337
EcoT14I CCWWGG 1 cut(s) 35
EgeI GGCGCC 2 cut(s) 144, 287
EheI GGCGCC 2 cut(s) 144, 287
ErhI CCWWGG 1 cut(s) 35
FaiI YATR 5 cut(s) 48, 140, 297, 326, 371
FaqI GGGAC 2 cut(s) 105, 256
Fnu4HI GCNGC 3 cut(s) 172, 182, 248
Fsp4HI GCNGC 3 cut(s) 172, 182, 248
FspBI CTAG 2 cut(s) 78, 431
FspI TGCGCA 1 cut(s) 55
GlaI GCGC 7 cut(s) 55, 144, 156, 158, 273, 287, 355
GluI GCNGC 3 cut(s) 172, 182, 248
GsaI CCCAGC 2 cut(s) 171, 264
GsuI CTGGAG 2 cut(s) 161, 272
HaeII RGCGCY 2 cut(s) 146, 289
HaeIII GGCC 1 cut(s) 40
HapII CCGG 3 cut(s) 146, 195, 283
HgaI GACGC 1 cut(s) 253
HhaI GCGC 7 cut(s) 56, 145, 157, 159, 274, 288, 356
Hin1I GRCGYC 4 cut(s) 93, 118, 143, 286
Hin6I GCGC 7 cut(s) 54, 143, 155, 157, 272, 286, 354
HinP1I GCGC 7 cut(s) 54, 143, 155, 157, 272, 286, 354
HinfI GANTC 2 cut(s) 216, 254
HpaII CCGG 3 cut(s) 146, 195, 283
Hpy188I TCNGA 2 cut(s) 360, 415
Hpy188III TCNNGA 3 cut(s) 62, 78, 400
HpyAV CCTTC 1 cut(s) 82
HpyCH4III ACNGT 1 cut(s) 137
HpyCH4IV ACGT 3 cut(s) 93, 118, 293
HpyF10VI GCNNNNNNNGC 1 cut(s) 325
HpyF3I CTNAG 1 cut(s) 124
HpySE526I ACGT 3 cut(s) 93, 118, 293
Hsp92I GRCGYC 4 cut(s) 93, 118, 143, 286
HspAI GCGC 7 cut(s) 54, 143, 155, 157, 272, 286, 354
KasI GGCGCC 2 cut(s) 142, 285
KroI GCCGGC 2 cut(s) 145, 282
KroNI GCCGGC 2 cut(s) 147, 284
Kzo9I GATC 4 cut(s) 80, 187, 376, 422
Lsp1109I GCAGC 3 cut(s) 183, 193, 234
LweI GCATC 1 cut(s) 376
MaeI CTAG 2 cut(s) 78, 431
MaeII ACGT 3 cut(s) 93, 118, 293
MalI GATC 4 cut(s) 82, 189, 378, 424
MboI GATC 4 cut(s) 80, 187, 376, 422
MboII GAAGA 2 cut(s) 27, 41
MflI RGATCY 1 cut(s) 376
MlsI TGGCCA 1 cut(s) 40
MluCI AATT 3 cut(s) 200, 206, 347
MluNI TGGCCA 1 cut(s) 40
Mly113I GGCGCC 2 cut(s) 143, 286
MlyI GAGTC 2 cut(s) 210, 263
MnlI CCTC 7 cut(s) 133, 144, 170, 185, 220, 262, 288
Mox20I TGGCCA 1 cut(s) 40
MreI CGCCGGCG 2 cut(s) 145, 282
MroNI GCCGGC 2 cut(s) 145, 282
MscI TGGCCA 1 cut(s) 40
MseI TTAA 2 cut(s) 107, 445
Msp20I TGGCCA 1 cut(s) 40
MspA1I CMGCKG 2 cut(s) 213, 260
MspI CCGG 3 cut(s) 146, 195, 283
MspR9I CCNGG 1 cut(s) 223
MvaI CCWGG 1 cut(s) 223
MvnI CGCG 2 cut(s) 157, 354
MwoI GCNNNNNNNGC 1 cut(s) 325
NaeI GCCGGC 2 cut(s) 147, 284
NarI GGCGCC 2 cut(s) 143, 286
NdeII GATC 4 cut(s) 80, 187, 376, 422
NgoMIV GCCGGC 2 cut(s) 145, 282
NlaIV GGNNCC 2 cut(s) 144, 287
NsbI TGCGCA 1 cut(s) 55
PalAI GGCGCGCC 1 cut(s) 155
PauI GCGCGC 1 cut(s) 155
PcsI WCGNNNNNNNCGW 1 cut(s) 286
PdiI GCCGGC 2 cut(s) 147, 284
Pfl23II CGTACG 1 cut(s) 290
PflMI CCANNNNNTGG 1 cut(s) 139
PkrI GCNGC 3 cut(s) 173, 183, 249
PleI GAGTC 2 cut(s) 210, 262
PluTI GGCGCC 2 cut(s) 146, 289
PpsI GAGTC 2 cut(s) 210, 262
Ppu21I YACGTR 1 cut(s) 294
Psp6I CCWGG 1 cut(s) 221
PspFI CCCAGC 2 cut(s) 167, 260
PspGI CCWGG 1 cut(s) 221
PspLI CGTACG 1 cut(s) 290
PspN4I GGNNCC 2 cut(s) 144, 287
PsuI RGATCY 1 cut(s) 376
PteI GCGCGC 1 cut(s) 155
RsaI GTAC 1 cut(s) 292
RsaNI GTAC 1 cut(s) 291
SaqAI TTAA 2 cut(s) 107, 445
SatI GCNGC 3 cut(s) 172, 182, 248
Sau3AI GATC 4 cut(s) 80, 187, 376, 422
SchI GAGTC 2 cut(s) 210, 263
ScrFI CCNGG 1 cut(s) 223
SetI ASST 6 cut(s) 37, 96, 121, 296, 370, 412
SfaNI GCATC 1 cut(s) 376
SfoI GGCGCC 2 cut(s) 144, 287
SgrAI CRCCGGYG 2 cut(s) 145, 282
SgsI GGCGCGCC 1 cut(s) 155
SmlI CTYRAG 2 cut(s) 60, 310
SmoI CTYRAG 2 cut(s) 60, 310
SnaBI TACGTA 1 cut(s) 294
Sse9I AATT 3 cut(s) 200, 206, 347
SsiI CCGC 6 cut(s) 97, 114, 213, 258, 342, 374
SspDI GGCGCC 2 cut(s) 142, 285
SspMI CTAG 2 cut(s) 78, 431
StyD4I CCNGG 1 cut(s) 221
StyI CCWWGG 1 cut(s) 35
TaaI ACNGT 1 cut(s) 137
TaiI ACGT 3 cut(s) 96, 121, 296
TasI AATT 3 cut(s) 200, 206, 347
Tru1I TTAA 2 cut(s) 107, 445
Tru9I TTAA 2 cut(s) 107, 445
TseI GCWGC 3 cut(s) 171, 181, 247
Van91I CCANNNNNTGG 1 cut(s) 139
XapI RAATTY 1 cut(s) 206
XbaI TCTAGA 1 cut(s) 77
XspI CTAG 2 cut(s) 78, 431
ZraI GACGTC 2 cut(s) 94, 119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.