FvH4_3g29922

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000118
Physical Location & Seq
Reverse (-)
23029147 .. 23030037
891 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g29922.t1

Sequence Viewer

Length: 513 bp
ATGCTGTTGGAGATTATAAGCAGAGTATTTGTCAATAAGAGGCATTCTCAGGTGCAGACGATTTTCGTCCGTTCGACACCGTACGGCGCTACGCGAGGATGCGCCTCCACCCCAGTGGACTCCAGCAGCTTCCCCAACCACTTTCCATCTCCGGCGAGTCCACTGAATTCCAGTTTTCCGGCGAGATCGACTTTATTTGAAGTTTTGGGTGATCTCGCCGGAAAATTGGAAAAGAACGGACTCGCCGGGGATGGAAAGTGGTCGGGGAAGCTGCTGGAGTTCGCTGGGGTGGAGGCGCGCCCTCGCGCGGCGTTGTACAATGACGAACGGACGGAAATCCGCACCGACTGGCCGGCGACAAGTTTTCCGACCAACCTTGATCAATCATGGTGTTTTCCGTCCAGAGCTTCAATCCGCCCGGAAAACTTGTCGCCGGCCAGTCCTAGAAGGAGAGAAGCCGTCTTGGAAGCCTGTGCTGTCGTCCGGGAAGGAGATAAGCCGTCGCCGGCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

171

Amino Acids

18.59

Weight (kDa)

8.93

Isoelectric Point (pI)

65.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000118)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01361 FvH4_1g07161 FvH4_1g07431 FvH4_1g07821 FvH4_1g08223 FvH4_1g10041 FvH4_1g12132 FvH4_1g15053 FvH4_1g18161 FvH4_1g18400 FvH4_1g18931 FvH4_1g19242 FvH4_1g19461 FvH4_1g20550 FvH4_1g21381 FvH4_1g21542 FvH4_1g22102 FvH4_1g23991 FvH4_1g24542 FvH4_1g24951 FvH4_1g24960 FvH4_1g25272 FvH4_1g25552 FvH4_1g25771 FvH4_1g28771 FvH4_1g29201 FvH4_1g29611 FvH4_2g01181 FvH4_2g02491 FvH4_2g04621 FvH4_2g04631 FvH4_2g07460 FvH4_2g08540 FvH4_2g08550 FvH4_2g09292 FvH4_2g10501 FvH4_2g12101 FvH4_2g12220 FvH4_2g12551 FvH4_2g14071 FvH4_2g14241 FvH4_2g15041 FvH4_2g15311 FvH4_2g18971 FvH4_2g19220 FvH4_2g19260 FvH4_2g19611 FvH4_2g19652 FvH4_2g20211 FvH4_2g20231 FvH4_2g21541 FvH4_2g22380 FvH4_2g27712 FvH4_2g28171 FvH4_2g29879 FvH4_2g32391 FvH4_3g02171 FvH4_3g05531 FvH4_3g09750 FvH4_3g10310 FvH4_3g10460 FvH4_3g13172 FvH4_3g15232 FvH4_3g18481 FvH4_3g18621 FvH4_3g20504 FvH4_3g20812 FvH4_3g22320 FvH4_3g22930 FvH4_3g22940 FvH4_3g23752 FvH4_3g24791 FvH4_3g26411 FvH4_3g26432 FvH4_3g27201 FvH4_3g27862 FvH4_3g28871 FvH4_3g28954 FvH4_3g29131 FvH4_3g29832 FvH4_3g29922 FvH4_3g30190 FvH4_3g32231 FvH4_3g32250 FvH4_3g33460 FvH4_3g34670 FvH4_3g36982 FvH4_3g37001 FvH4_3g38252 FvH4_3g38772 FvH4_3g40141 FvH4_3g40181 FvH4_3g42521 FvH4_4g00090 FvH4_4g00290 FvH4_4g00301 FvH4_4g00530 FvH4_4g00823 FvH4_4g02300 FvH4_4g02450 FvH4_4g03360 FvH4_4g04481 FvH4_4g04761 FvH4_4g06301 FvH4_4g06630 FvH4_4g08312 FvH4_4g08552 FvH4_4g10053 FvH4_4g11971 FvH4_4g13211 FvH4_4g13511 FvH4_4g15351 FvH4_4g16360 FvH4_4g16601 FvH4_4g18462 FvH4_4g22911 FvH4_4g23221 FvH4_4g24301 FvH4_4g24721 FvH4_4g27905 FvH4_4g28971 FvH4_4g29540 FvH4_4g30720 FvH4_4g31521 FvH4_4g33371 FvH4_4g34111 FvH4_4g35740 FvH4_5g00131 FvH4_5g02530 FvH4_5g02550 FvH4_5g02560 FvH4_5g02580 FvH4_5g03783 FvH4_5g05681 FvH4_5g05681 FvH4_5g09371 FvH4_5g09381 FvH4_5g14611 FvH4_5g15341 FvH4_5g19801 FvH4_5g20110 FvH4_5g20911 FvH4_5g22230 FvH4_5g25751 FvH4_5g26070 FvH4_5g26471 FvH4_5g27072 FvH4_5g27471 FvH4_5g27471 FvH4_5g27998 FvH4_5g28291 FvH4_5g30951 FvH4_5g31082 FvH4_5g31890 FvH4_5g32251 FvH4_5g34112 FvH4_5g37184 FvH4_5g37993 FvH4_5g38271 FvH4_6g00153 FvH4_6g00640 FvH4_6g05921 FvH4_6g08591 FvH4_6g09511 FvH4_6g10331 FvH4_6g10401 FvH4_6g14161 FvH4_6g14171 FvH4_6g18481 FvH4_6g19721 FvH4_6g19980 FvH4_6g20104 FvH4_6g20112 FvH4_6g21261 FvH4_6g21651 FvH4_6g22051 FvH4_6g23141 FvH4_6g24822 FvH4_6g25082 FvH4_6g25391 FvH4_6g25560 FvH4_6g26350 FvH4_6g27031 FvH4_6g27810 FvH4_6g27971 FvH4_6g28331 FvH4_6g29391 FvH4_6g30781 FvH4_6g32221 FvH4_6g34680 FvH4_6g36181 FvH4_6g36551 FvH4_6g37491 FvH4_6g37663 FvH4_6g39590 FvH4_6g40582 FvH4_6g43843 FvH4_6g50551 FvH4_7g00240 FvH4_7g00731 FvH4_7g01031 FvH4_7g03301 FvH4_7g08180 FvH4_7g08180 FvH4_7g10631 FvH4_7g19710 FvH4_7g23892 FvH4_7g25280 FvH4_7g25551 FvH4_7g30121 FvH4_7g31931 FvH4_7g32672 FvH4_c21g00040 FvH4_c2g00053
prunus_persica Prupe.1G448800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322451 RchiOBHm_Chr5g0015171
rosa_laevigata RLG00000003077 RLG00000018186 RLG00000030343
rosa_multiflora Rmu_co8096726.1_g000001
rosa_roxburghii Rroxscaffold_157G00438380 Rroxscaffold_1G00001730 Rroxscaffold_3G00236310
rosa_rugosa Rorug02G0236500
rosa_samantha Rh4BG247300 Rh6BG286200 Rh6CG287300 Rh7DG257500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 17
AccII CGCG 4 cut(s) 94, 298, 306, 308
AciI CCGC 3 cut(s) 308, 340, 415
AcoI YGGCCR 2 cut(s) 350, 435
AcsI RAATTY 1 cut(s) 166
AfaI GTAC 2 cut(s) 83, 317
AfiI CCNNNNNNNGG 1 cut(s) 307
AgsI TTSAA 2 cut(s) 200, 411
AleI CACNNNNGTG 1 cut(s) 113
AluBI AGCT 3 cut(s) 129, 271, 407
AluI AGCT 3 cut(s) 129, 271, 407
AoxI GGCC 2 cut(s) 350, 435
ApeKI GCWGC 2 cut(s) 126, 271
ApoI RAATTY 1 cut(s) 166
AscI GGCGCGCC 1 cut(s) 296
AspLEI GCGC 5 cut(s) 89, 104, 298, 300, 308
AsuC2I CCSGG 3 cut(s) 247, 419, 485
AsuHPI GGTGA 1 cut(s) 221
BbvI GCAGC 2 cut(s) 138, 258
BccI CCATC 2 cut(s) 154, 245
BceAI ACGGC 3 cut(s) 100, 443, 484
BclI TGATCA 1 cut(s) 379
BcnI CCSGG 3 cut(s) 247, 419, 485
BfaI CTAG 1 cut(s) 444
BfoI RGCGCY 1 cut(s) 90
BisI GCNGC 3 cut(s) 127, 272, 309
BlsI GCNGC 3 cut(s) 128, 273, 310
Bme1390I CCNGG 3 cut(s) 247, 419, 485
BmrFI CCNGG 3 cut(s) 247, 419, 485
BmrI ACTGGG 1 cut(s) 107
BmsI GCATC 1 cut(s) 89
BmuI ACTGGG 1 cut(s) 107
BplI GAGNNNNNCTC 2 cut(s) 31, 63
BpmI CTGGAG 2 cut(s) 106, 296
BpuMI CCSGG 3 cut(s) 247, 419, 485
BsaJI CCNNGG 1 cut(s) 246
Bsc4I CCNNNNNNNGG 1 cut(s) 307
Bse118I RCCGGY 3 cut(s) 352, 433, 505
Bse1I ACTGG 4 cut(s) 113, 171, 353, 438
BseDI CCNNGG 1 cut(s) 246
BseGI GGATG 2 cut(s) 104, 256
BseLI CCNNNNNNNGG 1 cut(s) 307
BseMII CTCAG 1 cut(s) 62
BseNI ACTGG 4 cut(s) 113, 171, 353, 438
BsePI GCGCGC 1 cut(s) 296
BseXI GCAGC 2 cut(s) 138, 258
BseYI CCCAGC 1 cut(s) 284
BsgI GTGCAG 1 cut(s) 74
Bsh1236I CGCG 4 cut(s) 94, 298, 306, 308
BshFI GGCC 2 cut(s) 352, 437
BsiSI CCGG 9 cut(s) 152, 179, 219, 246, 353, 419, 434, 484, 506
BsiWI CGTACG 1 cut(s) 81
BslI CCNNNNNNNGG 1 cut(s) 307
BsmI GAATGC 1 cut(s) 43
BsnI GGCC 2 cut(s) 352, 437
Bsp1407I TGTACA 1 cut(s) 315
Bsp143I GATC 3 cut(s) 185, 211, 379
BspACI CCGC 3 cut(s) 308, 340, 415
BspANI GGCC 2 cut(s) 352, 437
BspCNI CTCAG 1 cut(s) 61
BspFNI CGCG 4 cut(s) 94, 298, 306, 308
BsrFI RCCGGY 3 cut(s) 352, 433, 505
BsrGI TGTACA 1 cut(s) 315
BsrI ACTGG 4 cut(s) 113, 171, 353, 438
BssAI RCCGGY 3 cut(s) 352, 433, 505
BssECI CCNNGG 1 cut(s) 246
BssHII GCGCGC 1 cut(s) 296
BssMI GATC 3 cut(s) 185, 211, 379
Bst4CI ACNGT 1 cut(s) 81
BstAUI TGTACA 1 cut(s) 315
BstC8I GCNNGC 4 cut(s) 298, 354, 435, 507
BstDEI CTNAG 1 cut(s) 48
BstF5I GGATG 2 cut(s) 104, 256
BstFNI CGCG 4 cut(s) 94, 298, 306, 308
BstH2I RGCGCY 1 cut(s) 90
BstHHI GCGC 5 cut(s) 89, 104, 298, 300, 308
BstKTI GATC 3 cut(s) 188, 214, 382
BstMBI GATC 3 cut(s) 185, 211, 379
BstSCI CCNGG 3 cut(s) 245, 417, 483
BstUI CGCG 4 cut(s) 94, 298, 306, 308
BstV1I GCAGC 2 cut(s) 138, 258
BstXI CCANNNNNNTGG 1 cut(s) 115
BsuRI GGCC 2 cut(s) 352, 437
BtsCI GGATG 2 cut(s) 104, 256
BtsIMutI CAGTG 2 cut(s) 120, 161
Cac8I GCNNGC 4 cut(s) 298, 354, 435, 507
CfoI GCGC 5 cut(s) 89, 104, 298, 300, 308
Cfr10I RCCGGY 3 cut(s) 352, 433, 505
Csp6I GTAC 2 cut(s) 82, 316
CviAII CATG 1 cut(s) 387
CviJI RGCY 8 cut(s) 129, 271, 352, 407, 437, 458, 470, 499
CviKI_1 RGCY 8 cut(s) 129, 271, 352, 407, 437, 458, 470, 499
CviQI GTAC 2 cut(s) 82, 316
DdeI CTNAG 1 cut(s) 48
DpnI GATC 3 cut(s) 187, 213, 381
DpnII GATC 3 cut(s) 185, 211, 379
EaeI YGGCCR 2 cut(s) 350, 435
EciI GGCGGA 1 cut(s) 404
EcoRI GAATTC 1 cut(s) 166
FaeI CATG 1 cut(s) 390
FaiI YATR 2 cut(s) 17, 388
FatI CATG 1 cut(s) 386
FbaI TGATCA 1 cut(s) 379
Fnu4HI GCNGC 3 cut(s) 127, 272, 309
FokI GGATG 2 cut(s) 111, 263
Fsp4HI GCNGC 3 cut(s) 127, 272, 309
FspBI CTAG 1 cut(s) 444
GlaI GCGC 5 cut(s) 88, 103, 297, 299, 307
GluI GCNGC 3 cut(s) 127, 272, 309
GsaI CCCAGC 1 cut(s) 288
GsuI CTGGAG 2 cut(s) 106, 296
HaeII RGCGCY 1 cut(s) 90
HaeIII GGCC 2 cut(s) 352, 437
HapII CCGG 9 cut(s) 152, 179, 219, 246, 353, 419, 434, 484, 506
HhaI GCGC 5 cut(s) 89, 104, 298, 300, 308
Hin1II CATG 1 cut(s) 390
Hin6I GCGC 5 cut(s) 87, 102, 296, 298, 306
HinP1I GCGC 5 cut(s) 87, 102, 296, 298, 306
HinfI GANTC 3 cut(s) 119, 157, 240
HpaII CCGG 9 cut(s) 152, 179, 219, 246, 353, 419, 434, 484, 506
HphI GGTGA 1 cut(s) 221
Hpy166II GTNNAC 2 cut(s) 118, 161
Hpy188I TCNGA 1 cut(s) 369
Hpy188III TCNNGA 1 cut(s) 402
Hpy8I GTNNAC 2 cut(s) 118, 161
Hpy99I CGWCG 1 cut(s) 505
HpyAV CCTTC 2 cut(s) 441, 482
HpyCH4III ACNGT 1 cut(s) 81
HpyCH4V TGCA 1 cut(s) 55
HpyF3I CTNAG 1 cut(s) 48
Hsp92II CATG 1 cut(s) 390
HspAI GCGC 5 cut(s) 87, 102, 296, 298, 306
KroI GCCGGC 3 cut(s) 352, 433, 505
KroNI GCCGGC 3 cut(s) 354, 435, 507
Ksp22I TGATCA 1 cut(s) 379
Kzo9I GATC 3 cut(s) 185, 211, 379
Lsp1109I GCAGC 2 cut(s) 138, 258
LweI GCATC 1 cut(s) 89
MaeI CTAG 1 cut(s) 444
MalI GATC 3 cut(s) 187, 213, 381
MboI GATC 3 cut(s) 185, 211, 379
MluCI AATT 2 cut(s) 166, 224
MlyI GAGTC 3 cut(s) 113, 166, 234
MmeI TCCRAC 1 cut(s) 392
MnlI CCTC 5 cut(s) 33, 89, 115, 286, 312
MreI CGCCGGCG 1 cut(s) 505
MroNI GCCGGC 3 cut(s) 352, 433, 505
MslI CAYNNNNRTG 1 cut(s) 113
MspI CCGG 9 cut(s) 152, 179, 219, 246, 353, 419, 434, 484, 506
MspR9I CCNGG 3 cut(s) 247, 419, 485
Mva1269I GAATGC 1 cut(s) 43
MvnI CGCG 4 cut(s) 94, 298, 306, 308
NaeI GCCGGC 3 cut(s) 354, 435, 507
NciI CCSGG 3 cut(s) 247, 419, 485
NdeII GATC 3 cut(s) 185, 211, 379
NgoMIV GCCGGC 3 cut(s) 352, 433, 505
NlaIII CATG 1 cut(s) 390
OliI CACNNNNGTG 1 cut(s) 113
PalAI GGCGCGCC 1 cut(s) 296
PauI GCGCGC 1 cut(s) 296
PctI GAATGC 1 cut(s) 43
PdiI GCCGGC 3 cut(s) 354, 435, 507
Pfl23II CGTACG 1 cut(s) 81
PfoI TCCNGGA 1 cut(s) 483
PkrI GCNGC 3 cut(s) 128, 273, 310
PleI GAGTC 3 cut(s) 113, 165, 234
PpsI GAGTC 3 cut(s) 113, 165, 234
PsiI TTATAA 1 cut(s) 17
PspFI CCCAGC 1 cut(s) 284
PspLI CGTACG 1 cut(s) 81
PteI GCGCGC 1 cut(s) 296
RsaI GTAC 2 cut(s) 83, 317
RsaNI GTAC 2 cut(s) 82, 316
RseI CAYNNNNRTG 1 cut(s) 113
SatI GCNGC 3 cut(s) 127, 272, 309
Sau3AI GATC 3 cut(s) 185, 211, 379
SchI GAGTC 3 cut(s) 113, 166, 234
ScrFI CCNGG 3 cut(s) 247, 419, 485
SetI ASST 5 cut(s) 54, 131, 273, 378, 409
SfaNI GCATC 1 cut(s) 89
SgrAI CRCCGGYG 1 cut(s) 505
SgsI GGCGCGCC 1 cut(s) 296
SmiMI CAYNNNNRTG 1 cut(s) 113
Sse9I AATT 2 cut(s) 166, 224
SsiI CCGC 3 cut(s) 308, 340, 415
SspMI CTAG 1 cut(s) 444
StyD4I CCNGG 3 cut(s) 245, 417, 483
TaaI ACNGT 1 cut(s) 81
TaqI TCGA 2 cut(s) 74, 188
TasI AATT 2 cut(s) 166, 224
TatI WGTACW 1 cut(s) 315
TauI GCSGC 1 cut(s) 311
TscAI CASTG 2 cut(s) 120, 168
TseI GCWGC 2 cut(s) 126, 271
TspGWI ACGGA 5 cut(s) 59, 252, 343, 347, 387
TspRI CASTG 2 cut(s) 120, 168
XapI RAATTY 1 cut(s) 166
XspI CTAG 1 cut(s) 444
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.