Rroxscaffold_1G00001730

Retrotransposon gag protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000118
Physical Location & Seq
Forward (+)
1953128 .. 1958377
5250 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00001730.1

Sequence Viewer

Length: 1752 bp
ATGGCTACACGATCAAGGAGAAACTTCAGAGGGCGTCTGACTGACAACCAGCGAGATGGTTTGTTACTAAAGATTGTTGAGCAACTTGAATCGATGGACACTCGGAGTGCATCAATGGACACTCGGATCAAAAAGTTAGAAGATCGTGGGAAAGCTTCCGCAACTGATAAGGCAGATGAAGAAGAAGATACTATAGTTGAGGAAACCAACACTGATGACAAAGAAGAGCAGGCCCAGAACAAGCAATCTTTTGGGGATTGGGTCAAAGAATACCTTGAGTCTAGTAGTGTGCCTGACAAAGTGGATACTGCTGGAGATATTACCAAGAAAGTTAAGGTTGAAGTGCCCGATTTCGAGGGGAAAACTGACCCTACTGTGTTTTCAGATTGGCTTGCTAGAATCGAGGAGTACTTTGATTGGTATGACATGGATGATGAACGGCGAGTGAGGTTTGCTAAGATGAAACTGGTGCTCTTGGCAAAAGTATGGTGGGCTGGTGTTGAAGGTGATATTATGAGATTGGGACAACCACCAATCAGCTCTTGGCAAGAGATGAAGGCCAAGTTGCGAGAGAAATACATGCCACCTAACTATCTTGACAAACTGTGTGATAAGCTCACTGCTCTCAAGCAAGGCAACATGTCAGTATCTGAGTATATGCAAAAGTTTGACGAGTTAAAGACTAGGAGTCGGATTGTAGAAGACCCTAGACAAACTCTTGCAAGGTTCAAGGCTGGTTTGAGACCTGACATAAAGAGAGAGCTGATACGGCAACAGGTGTACAGCGTAGAACATGCTTTCCAAGTTGCTCTGGACTTGGAAGAATATCTGGAAGACACCCAGCATGGTAAATCTGGTCTTCAAAGTAGTGGAACAGCGCAACAGAAGTATAATGAGATGGTTGGTAAGGTGGGAACAGGAGCAGCTGATGCTAAACCATCTTCTTCAAAGATGACGGAGACAAGGAAGTGTTTTAAGTGTGGGGAGCCAGGTCATATGGGCTTTCAATGTCCAAAGAAAAATCTGCACATCAGAATAGAGCATGAAGAAGAGACTGAACAGCAACGGGAAGGTGGGGATGACGGTACCTTCGACTACGGAATTTATGATCCATCTGATCTGGACGAAGACTTAGATACTTCGGTCTGTTCTGTTGTTAGACACAATATAGCACCTCCTACAATTGAAGATGAGGATTGGCGACGAACAGATATTTTCCAGATGTTGGTTCGTTGTGGGGACAGAGCTCAAAAGCTGATAATTGATGGTGGAAGTTGTGTAAATGCTATCTCAAGTTCGGCAGTTGAGCGCCTCAAACTTCAAGTGCAGCCACAGCCACAGCCACACAAGGTCGGTTGGGTTGACAGCACCCAAATTCCAGTGACGCATCGATGCCTTGTGTCTTTTTCTTGTGGAGACTATCAAGATTCCATTTGGTGTGACGTGATCCCCATGAAGGCAGCACATATACTTCTTGGAAGACCGTGGCTATTTGATCGAGATGTGCACCATTGTGGAAAAGAAAATACATATTCTTTCCTCTTTAACAAGAAGAAGGTTGTCTTGAAGCCTATGAGGACAGTTGACATGGAGAAATACAGGGGAAAGACACTCAGGAAACCTAATGCACCCAAGAGGAAAGTTCTTCATATTCTTATGCCGAAATCATTTCCGCTAGAGCCTGGTGATTTGGTGAGGGGAATCTACACCTTTAACTCGCCGGAGTCGAGTTTTTCAACCGAGGGAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 Retrotrans_gag zf-CCHC

Protein Analysis

583

Amino Acids

66.83

Weight (kDa)

5.89

Isoelectric Point (pI)

47.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ty3_capsid PF19259 112 - 281 3e-08 Ty3 transposon capsid-like protein
Retrotrans_gag PF03732 160 - 249 2.9e-14 Retrotransposon gag protein
zf-CCHC PF00098 322 - 339 6.2e-06 Zinc knuckle
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000118)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01361 FvH4_1g07161 FvH4_1g07431 FvH4_1g07821 FvH4_1g08223 FvH4_1g10041 FvH4_1g12132 FvH4_1g15053 FvH4_1g18161 FvH4_1g18400 FvH4_1g18931 FvH4_1g19242 FvH4_1g19461 FvH4_1g20550 FvH4_1g21381 FvH4_1g21542 FvH4_1g22102 FvH4_1g23991 FvH4_1g24542 FvH4_1g24951 FvH4_1g24960 FvH4_1g25272 FvH4_1g25552 FvH4_1g25771 FvH4_1g28771 FvH4_1g29201 FvH4_1g29611 FvH4_2g01181 FvH4_2g02491 FvH4_2g04621 FvH4_2g04631 FvH4_2g07460 FvH4_2g08540 FvH4_2g08550 FvH4_2g09292 FvH4_2g10501 FvH4_2g12101 FvH4_2g12220 FvH4_2g12551 FvH4_2g14071 FvH4_2g14241 FvH4_2g15041 FvH4_2g15311 FvH4_2g18971 FvH4_2g19220 FvH4_2g19260 FvH4_2g19611 FvH4_2g19652 FvH4_2g20211 FvH4_2g20231 FvH4_2g21541 FvH4_2g22380 FvH4_2g27712 FvH4_2g28171 FvH4_2g29879 FvH4_2g32391 FvH4_3g02171 FvH4_3g05531 FvH4_3g09750 FvH4_3g10310 FvH4_3g10460 FvH4_3g13172 FvH4_3g15232 FvH4_3g18481 FvH4_3g18621 FvH4_3g20504 FvH4_3g20812 FvH4_3g22320 FvH4_3g22930 FvH4_3g22940 FvH4_3g23752 FvH4_3g24791 FvH4_3g26411 FvH4_3g26432 FvH4_3g27201 FvH4_3g27862 FvH4_3g28871 FvH4_3g28954 FvH4_3g29131 FvH4_3g29832 FvH4_3g29922 FvH4_3g30190 FvH4_3g32231 FvH4_3g32250 FvH4_3g33460 FvH4_3g34670 FvH4_3g36982 FvH4_3g37001 FvH4_3g38252 FvH4_3g38772 FvH4_3g40141 FvH4_3g40181 FvH4_3g42521 FvH4_4g00090 FvH4_4g00290 FvH4_4g00301 FvH4_4g00530 FvH4_4g00823 FvH4_4g02300 FvH4_4g02450 FvH4_4g03360 FvH4_4g04481 FvH4_4g04761 FvH4_4g06301 FvH4_4g06630 FvH4_4g08312 FvH4_4g08552 FvH4_4g10053 FvH4_4g11971 FvH4_4g13211 FvH4_4g13511 FvH4_4g15351 FvH4_4g16360 FvH4_4g16601 FvH4_4g18462 FvH4_4g22911 FvH4_4g23221 FvH4_4g24301 FvH4_4g24721 FvH4_4g27905 FvH4_4g28971 FvH4_4g29540 FvH4_4g30720 FvH4_4g31521 FvH4_4g33371 FvH4_4g34111 FvH4_4g35740 FvH4_5g00131 FvH4_5g02530 FvH4_5g02550 FvH4_5g02560 FvH4_5g02580 FvH4_5g03783 FvH4_5g05681 FvH4_5g05681 FvH4_5g09371 FvH4_5g09381 FvH4_5g14611 FvH4_5g15341 FvH4_5g19801 FvH4_5g20110 FvH4_5g20911 FvH4_5g22230 FvH4_5g25751 FvH4_5g26070 FvH4_5g26471 FvH4_5g27072 FvH4_5g27471 FvH4_5g27471 FvH4_5g27998 FvH4_5g28291 FvH4_5g30951 FvH4_5g31082 FvH4_5g31890 FvH4_5g32251 FvH4_5g34112 FvH4_5g37184 FvH4_5g37993 FvH4_5g38271 FvH4_6g00153 FvH4_6g00640 FvH4_6g05921 FvH4_6g08591 FvH4_6g09511 FvH4_6g10331 FvH4_6g10401 FvH4_6g14161 FvH4_6g14171 FvH4_6g18481 FvH4_6g19721 FvH4_6g19980 FvH4_6g20104 FvH4_6g20112 FvH4_6g21261 FvH4_6g21651 FvH4_6g22051 FvH4_6g23141 FvH4_6g24822 FvH4_6g25082 FvH4_6g25391 FvH4_6g25560 FvH4_6g26350 FvH4_6g27031 FvH4_6g27810 FvH4_6g27971 FvH4_6g28331 FvH4_6g29391 FvH4_6g30781 FvH4_6g32221 FvH4_6g34680 FvH4_6g36181 FvH4_6g36551 FvH4_6g37491 FvH4_6g37663 FvH4_6g39590 FvH4_6g40582 FvH4_6g43843 FvH4_6g50551 FvH4_7g00240 FvH4_7g00731 FvH4_7g01031 FvH4_7g03301 FvH4_7g08180 FvH4_7g08180 FvH4_7g10631 FvH4_7g19710 FvH4_7g23892 FvH4_7g25280 FvH4_7g25551 FvH4_7g30121 FvH4_7g31931 FvH4_7g32672 FvH4_c21g00040 FvH4_c2g00053
prunus_persica Prupe.1G448800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322451 RchiOBHm_Chr5g0015171
rosa_laevigata RLG00000003077 RLG00000018186 RLG00000030343
rosa_multiflora Rmu_co8096726.1_g000001
rosa_roxburghii Rroxscaffold_157G00438380 Rroxscaffold_1G00001730 Rroxscaffold_3G00236310
rosa_rugosa Rorug02G0236500
rosa_samantha Rh4BG247300 Rh6BG286200 Rh6CG287300 Rh7DG257500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1085
AccB1I GGYRCC 1 cut(s) 1085
AccB7I CCANNNNNTGG 1 cut(s) 1225
AciI CCGC 2 cut(s) 159, 1673
AclWI GGATC 3 cut(s) 134, 1103, 1441
AcsI RAATTY 2 cut(s) 1101, 1374
AcuI CTGAAG 1 cut(s) 10
AcyI GRCGYC 1 cut(s) 34
AfaI GTAC 3 cut(s) 410, 782, 1087
AfiI CCNNNNNNNGG 2 cut(s) 1225, 1456
AflIII ACRYGT 1 cut(s) 639
AhdI GACNNNNNGTC 1 cut(s) 687
AjiI CACGTC 1 cut(s) 1444
AjnI CCWGG 2 cut(s) 988, 1681
AleI CACNNNNGTG 1 cut(s) 1512
AloI GAACNNNNNNTCC 2 cut(s) 783, 815
AluBI AGCT 7 cut(s) 155, 540, 616, 763, 926, 1247, 1255
AluI AGCT 7 cut(s) 155, 540, 616, 763, 926, 1247, 1255
Alw21I GWGCWC 3 cut(s) 474, 1249, 1509
Alw26I GTCTC 4 cut(s) 736, 953, 1046, 1410
Alw44I GTGCAC 1 cut(s) 1505
AlwI GGATC 3 cut(s) 134, 1103, 1441
AlwNI CAGNNNCTG 1 cut(s) 650
AoxI GGCC 2 cut(s) 231, 558
ApaLI GTGCAC 1 cut(s) 1505
ApeKI GCWGC 3 cut(s) 923, 1327, 1460
ApoI RAATTY 2 cut(s) 1101, 1374
ArsI GACNNNNNNTTYG 2 cut(s) 1073, 1105
Asp718I GGTACC 1 cut(s) 1085
AspLEI GCGC 2 cut(s) 880, 1311
AspS9I GGNCC 1 cut(s) 232
AsuHPI GGTGA 3 cut(s) 518, 1697, 1705
BaeGI GKGCMC 2 cut(s) 348, 1509
BaeI ACNNNNGTAYC 4 cut(s) 180, 213, 1128, 1161
BanI GGYRCC 1 cut(s) 1085
BanII GRGCYC 1 cut(s) 1249
BbsI GAAGAC 5 cut(s) 708, 840, 851, 1134, 1486
Bbv12I GWGCWC 3 cut(s) 474, 1249, 1509
BbvI GCAGC 3 cut(s) 935, 1339, 1472
BccI CCATC 6 cut(s) 50, 88, 892, 946, 1120, 1259
BceAI ACGGC 2 cut(s) 455, 785
BciT130I CCWGG 2 cut(s) 990, 1683
BciVI GTATCC 1 cut(s) 298
BcoDI GTCTC 4 cut(s) 736, 953, 1046, 1410
BfaI CTAG 5 cut(s) 282, 396, 684, 708, 1676
BfmI CTRYAG 1 cut(s) 192
BfoI RGCGCY 1 cut(s) 1312
BfuI GTATCC 1 cut(s) 298
BisI GCNGC 3 cut(s) 924, 1328, 1461
BlsI GCNGC 3 cut(s) 925, 1329, 1462
BmcAI AGTACT 1 cut(s) 410
Bme1390I CCNGG 2 cut(s) 990, 1683
BmeRI GACNNNNNGTC 1 cut(s) 687
BmgBI CACGTC 1 cut(s) 1444
BmgT120I GGNCC 1 cut(s) 232
BmiI GGNNCC 2 cut(s) 987, 1087
BmrFI CCNGG 2 cut(s) 990, 1683
BmsI GCATC 4 cut(s) 119, 919, 1382, 1396
BpiI GAAGAC 5 cut(s) 708, 840, 851, 1134, 1486
BpmI CTGGAG 1 cut(s) 333
BpuEI CTTGAG 3 cut(s) 296, 611, 1276
Bsa29I ATCGAT 2 cut(s) 92, 1390
BsaHI GRCGYC 1 cut(s) 34
BsaI GGTCTC 1 cut(s) 736
BsaJI CCNNGG 2 cut(s) 1484, 1740
Bsc4I CCNNNNNNNGG 2 cut(s) 1225, 1456
Bse1I ACTGG 2 cut(s) 471, 1379
BseBI CCWGG 2 cut(s) 990, 1683
BseCI ATCGAT 2 cut(s) 92, 1390
BseDI CCNNGG 2 cut(s) 1484, 1740
BseGI GGATG 2 cut(s) 436, 1084
BseLI CCNNNNNNNGG 2 cut(s) 1225, 1456
BseMII CTCAG 2 cut(s) 642, 1627
BseNI ACTGG 2 cut(s) 471, 1379
BseRI GAGGAG 1 cut(s) 419
BseSI GKGCMC 2 cut(s) 348, 1509
BseXI GCAGC 3 cut(s) 935, 1339, 1472
BseYI CCCAGC 1 cut(s) 840
BsgI GTGCAG 2 cut(s) 1010, 1346
BshFI GGCC 2 cut(s) 233, 560
BshNI GGYRCC 1 cut(s) 1085
BshVI ATCGAT 2 cut(s) 92, 1390
BsiHKAI GWGCWC 3 cut(s) 474, 1249, 1509
BsiSI CCGG 1 cut(s) 1721
BslFI GGGAC 2 cut(s) 537, 1253
BslI CCNNNNNNNGG 2 cut(s) 1225, 1456
BsmAI GTCTC 4 cut(s) 736, 953, 1046, 1410
BsmFI GGGAC 2 cut(s) 537, 1253
BsnI GGCC 2 cut(s) 233, 560
Bso31I GGTCTC 1 cut(s) 736
Bsp1286I GDGCHC 4 cut(s) 348, 474, 1249, 1509
Bsp1407I TGTACA 1 cut(s) 780
Bsp143I GATC 7 cut(s) 11, 126, 142, 1108, 1117, 1446, 1495
BspACI CCGC 2 cut(s) 159, 1673
BspANI GGCC 2 cut(s) 233, 560
BspCNI CTCAG 2 cut(s) 643, 1626
BspDI ATCGAT 2 cut(s) 92, 1390
BspLI GGNNCC 2 cut(s) 987, 1087
BspPI GGATC 3 cut(s) 134, 1103, 1441
BspQI GCTCTTC 1 cut(s) 219
BspT107I GGYRCC 1 cut(s) 1085
BspTNI GGTCTC 1 cut(s) 736
BsrGI TGTACA 1 cut(s) 780
BsrI ACTGG 2 cut(s) 471, 1379
BssECI CCNNGG 2 cut(s) 1484, 1740
BssMI GATC 7 cut(s) 11, 126, 142, 1108, 1117, 1446, 1495
BssNI GRCGYC 1 cut(s) 34
Bst2UI CCWGG 2 cut(s) 990, 1683
Bst4CI ACNGT 5 cut(s) 376, 606, 1085, 1485, 1582
Bst6I CTCTTC 2 cut(s) 219, 1044
BstACI GRCGYC 1 cut(s) 34
BstAPI GCANNNNNTGC 1 cut(s) 929
BstAUI TGTACA 1 cut(s) 780
BstC8I GCNNGC 2 cut(s) 231, 393
BstDEI CTNAG 4 cut(s) 456, 651, 1132, 1613
BstDSI CCRYGG 1 cut(s) 1484
BstF5I GGATG 2 cut(s) 436, 1084
BstH2I RGCGCY 1 cut(s) 1312
BstHHI GCGC 2 cut(s) 880, 1311
BstKTI GATC 7 cut(s) 14, 129, 145, 1111, 1120, 1449, 1498
BstMAI GTCTC 4 cut(s) 736, 953, 1046, 1410
BstMBI GATC 7 cut(s) 11, 126, 142, 1108, 1117, 1446, 1495
BstMWI GCNNNNNNNGC 3 cut(s) 769, 929, 1333
BstNI CCWGG 2 cut(s) 990, 1683
BstNSI RCATGY 3 cut(s) 583, 643, 797
BstSCI CCNGG 2 cut(s) 988, 1681
BstSFI CTRYAG 1 cut(s) 192
BstSLI GKGCMC 2 cut(s) 348, 1509
BstV1I GCAGC 3 cut(s) 935, 1339, 1472
BstV2I GAAGAC 5 cut(s) 708, 840, 851, 1134, 1486
BstXI CCANNNNNNTGG 1 cut(s) 56
Bsu15I ATCGAT 2 cut(s) 92, 1390
BsuI GTATCC 1 cut(s) 298
BsuRI GGCC 2 cut(s) 233, 560
BsuTUI ATCGAT 2 cut(s) 92, 1390
BtgI CCRYGG 1 cut(s) 1484
BtrI CACGTC 1 cut(s) 1444
BtsCI GGATG 2 cut(s) 436, 1084
BtsI GCAGTG 1 cut(s) 618
BtsIMutI CAGTG 3 cut(s) 210, 618, 1386
Cac8I GCNNGC 2 cut(s) 231, 393
CaiI CAGNNNCTG 1 cut(s) 650
CfoI GCGC 2 cut(s) 880, 1311
Cfr13I GGNCC 1 cut(s) 232
ClaI ATCGAT 2 cut(s) 92, 1390
CseI GACGC 2 cut(s) 23, 1393
Csp6I GTAC 3 cut(s) 409, 781, 1086
CviAII CATG 8 cut(s) 427, 580, 640, 794, 845, 1043, 1453, 1588
CviQI GTAC 3 cut(s) 409, 781, 1086
DdeI CTNAG 4 cut(s) 456, 651, 1132, 1613
DpnI GATC 7 cut(s) 13, 128, 144, 1110, 1119, 1448, 1497
DpnII GATC 7 cut(s) 11, 126, 142, 1108, 1117, 1446, 1495
DriI GACNNNNNGTC 1 cut(s) 687
Eam1104I CTCTTC 2 cut(s) 219, 1044
Eam1105I GACNNNNNGTC 1 cut(s) 687
EarI CTCTTC 2 cut(s) 219, 1044
Ecl136II GAGCTC 1 cut(s) 1247
Eco24I GRGCYC 1 cut(s) 1249
Eco31I GGTCTC 1 cut(s) 736
Eco53kI GAGCTC 1 cut(s) 1247
Eco57I CTGAAG 1 cut(s) 10
EcoICRI GAGCTC 1 cut(s) 1247
EcoRII CCWGG 2 cut(s) 988, 1681
EcoT38I GRGCYC 1 cut(s) 1249
FaeI CATG 8 cut(s) 430, 583, 643, 797, 848, 1046, 1456, 1591
FalI AAGNNNNNCTT 4 cut(s) 258, 290, 1547, 1579
FaqI GGGAC 2 cut(s) 537, 1253
FatI CATG 8 cut(s) 426, 579, 639, 793, 844, 1042, 1452, 1587
FauNDI CATATG 1 cut(s) 996
Fnu4HI GCNGC 3 cut(s) 924, 1328, 1461
FokI GGATG 2 cut(s) 443, 1091
FriOI GRGCYC 1 cut(s) 1249
Fsp4HI GCNGC 3 cut(s) 924, 1328, 1461
FspBI CTAG 5 cut(s) 282, 396, 684, 708, 1676
GlaI GCGC 2 cut(s) 879, 1310
GluI GCNGC 3 cut(s) 924, 1328, 1461
GsaI CCCAGC 1 cut(s) 844
GsuI CTGGAG 1 cut(s) 333
HaeII RGCGCY 1 cut(s) 1312
HaeIII GGCC 2 cut(s) 233, 560
HapII CCGG 1 cut(s) 1721
HgaI GACGC 2 cut(s) 23, 1393
HhaI GCGC 2 cut(s) 880, 1311
Hin1I GRCGYC 1 cut(s) 34
Hin1II CATG 8 cut(s) 430, 583, 643, 797, 848, 1046, 1456, 1591
Hin6I GCGC 2 cut(s) 878, 1309
HinP1I GCGC 2 cut(s) 878, 1309
HincII GTYRAC 2 cut(s) 1363, 1585
HindII GTYRAC 2 cut(s) 1363, 1585
HindIII AAGCTT 1 cut(s) 153
HinfI GANTC 7 cut(s) 89, 278, 399, 688, 1427, 1701, 1724
HpaII CCGG 1 cut(s) 1721
HphI GGTGA 3 cut(s) 518, 1697, 1705
Hpy166II GTNNAC 4 cut(s) 781, 1363, 1507, 1585
Hpy188I TCNGA 9 cut(s) 29, 39, 105, 126, 385, 652, 693, 1034, 1117
Hpy188III TCNNGA 9 cut(s) 596, 812, 830, 1121, 1219, 1424, 1499, 1564, 1615
Hpy8I GTNNAC 4 cut(s) 781, 1363, 1507, 1585
Hpy99I CGWCG 1 cut(s) 1206
HpyAV CCTTC 6 cut(s) 497, 550, 1064, 1099, 1450, 1549
HpyCH4III ACNGT 5 cut(s) 376, 606, 1085, 1485, 1582
HpyCH4IV ACGT 1 cut(s) 1443
HpyCH4V TGCA 7 cut(s) 110, 661, 722, 1027, 1327, 1507, 1628
HpyF10VI GCNNNNNNNGC 3 cut(s) 769, 929, 1333
HpyF3I CTNAG 4 cut(s) 456, 651, 1132, 1613
HpySE526I ACGT 1 cut(s) 1443
Hsp92I GRCGYC 1 cut(s) 34
Hsp92II CATG 8 cut(s) 430, 583, 643, 797, 848, 1046, 1456, 1591
HspAI GCGC 2 cut(s) 878, 1309
KpnI GGTACC 1 cut(s) 1089
Kzo9I GATC 7 cut(s) 11, 126, 142, 1108, 1117, 1446, 1495
LguI GCTCTTC 1 cut(s) 219
LmnI GCTCC 2 cut(s) 920, 985
Lsp1109I GCAGC 3 cut(s) 935, 1339, 1472
LweI GCATC 4 cut(s) 119, 919, 1382, 1396
MaeI CTAG 5 cut(s) 282, 396, 684, 708, 1676
MaeII ACGT 1 cut(s) 1443
MaeIII GTNAC 3 cut(s) 63, 1381, 1439
MalI GATC 7 cut(s) 13, 128, 144, 1110, 1119, 1448, 1497
MboI GATC 7 cut(s) 11, 126, 142, 1108, 1117, 1446, 1495
MfeI CAATTG 1 cut(s) 1182
MhlI GDGCHC 4 cut(s) 348, 474, 1249, 1509
MluCI AATT 4 cut(s) 1101, 1182, 1260, 1374
MlyI GAGTC 3 cut(s) 287, 697, 1733
MmeI TCCRAC 1 cut(s) 671
MseI TTAA 5 cut(s) 333, 677, 975, 1545, 1713
MslI CAYNNNNRTG 1 cut(s) 1512
MspA1I CMGCKG 1 cut(s) 926
MspI CCGG 1 cut(s) 1721
MspR9I CCNGG 2 cut(s) 990, 1683
MunI CAATTG 1 cut(s) 1182
MvaI CCWGG 2 cut(s) 990, 1683
MwoI GCNNNNNNNGC 3 cut(s) 769, 929, 1333
NdeI CATATG 1 cut(s) 996
NdeII GATC 7 cut(s) 11, 126, 142, 1108, 1117, 1446, 1495
NlaIII CATG 8 cut(s) 430, 583, 643, 797, 848, 1046, 1456, 1591
NlaIV GGNNCC 2 cut(s) 987, 1087
NmuCI GTSAC 2 cut(s) 1381, 1439
NspI RCATGY 3 cut(s) 583, 643, 797
OliI CACNNNNGTG 1 cut(s) 1512
PciI ACATGT 1 cut(s) 639
PciSI GCTCTTC 1 cut(s) 219
PcsI WCGNNNNNNNCGW 2 cut(s) 1089, 1724
PfeI GAWTC 4 cut(s) 89, 399, 1427, 1701
PflMI CCANNNNNTGG 1 cut(s) 1225
PkrI GCNGC 3 cut(s) 925, 1329, 1462
PleI GAGTC 3 cut(s) 286, 696, 1732
PpsI GAGTC 3 cut(s) 286, 696, 1732
PscI ACATGT 1 cut(s) 639
Psp124BI GAGCTC 1 cut(s) 1249
Psp6I CCWGG 2 cut(s) 988, 1681
PspFI CCCAGC 1 cut(s) 840
PspGI CCWGG 2 cut(s) 988, 1681
PspN4I GGNNCC 2 cut(s) 987, 1087
PspPI GGNCC 1 cut(s) 232
PstNI CAGNNNCTG 1 cut(s) 650
PvuII CAGCTG 1 cut(s) 926
RsaI GTAC 3 cut(s) 410, 782, 1087
RsaNI GTAC 3 cut(s) 409, 781, 1086
RseI CAYNNNNRTG 1 cut(s) 1512
SacI GAGCTC 1 cut(s) 1249
SapI GCTCTTC 1 cut(s) 219
SaqAI TTAA 5 cut(s) 333, 677, 975, 1545, 1713
SatI GCNGC 3 cut(s) 924, 1328, 1461
Sau3AI GATC 7 cut(s) 11, 126, 142, 1108, 1117, 1446, 1495
Sau96I GGNCC 1 cut(s) 232
ScaI AGTACT 1 cut(s) 410
SchI GAGTC 3 cut(s) 287, 697, 1733
ScrFI CCNGG 2 cut(s) 990, 1683
SduI GDGCHC 4 cut(s) 348, 474, 1249, 1509
SfaNI GCATC 4 cut(s) 119, 919, 1382, 1396
SfcI CTRYAG 1 cut(s) 192
SmiMI CAYNNNNRTG 1 cut(s) 1512
SmlI CTYRAG 3 cut(s) 275, 626, 1291
SmoI CTYRAG 3 cut(s) 275, 626, 1291
Sse9I AATT 4 cut(s) 1101, 1182, 1260, 1374
SsiI CCGC 2 cut(s) 159, 1673
SspMI CTAG 5 cut(s) 282, 396, 684, 708, 1676
SstI GAGCTC 1 cut(s) 1249
StyD4I CCNGG 2 cut(s) 988, 1681
TaaI ACNGT 5 cut(s) 376, 606, 1085, 1485, 1582
TaiI ACGT 1 cut(s) 1446
TaqI TCGA 7 cut(s) 92, 354, 402, 1092, 1390, 1498, 1727
TaqII GACCGA 1 cut(s) 1132
TasI AATT 4 cut(s) 1101, 1182, 1260, 1374
TatI WGTACW 2 cut(s) 408, 780
TfiI GAWTC 4 cut(s) 89, 399, 1427, 1701
Tru1I TTAA 5 cut(s) 333, 677, 975, 1545, 1713
Tru9I TTAA 5 cut(s) 333, 677, 975, 1545, 1713
TscAI CASTG 3 cut(s) 217, 625, 1386
TseFI GTSAC 2 cut(s) 1381, 1439
TseI GCWGC 3 cut(s) 923, 1327, 1460
Tsp45I GTSAC 2 cut(s) 1381, 1439
TspDTI ATGAA 7 cut(s) 192, 450, 476, 569, 1059, 1469, 1637
TspGWI ACGGA 2 cut(s) 971, 1113
TspRI CASTG 3 cut(s) 217, 625, 1386
Van91I CCANNNNNTGG 1 cut(s) 1225
VneI GTGCAC 1 cut(s) 1505
XapI RAATTY 2 cut(s) 1101, 1374
XceI RCATGY 3 cut(s) 583, 643, 797
XcmI CCANNNNNNNNNTGG 1 cut(s) 540
XspI CTAG 5 cut(s) 282, 396, 684, 708, 1676
ZrmI AGTACT 1 cut(s) 410
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.