FvH4_2g10501

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000118
Physical Location & Seq
Forward (+)
9313165 .. 9317496
4332 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g10501.t1

Sequence Viewer

Length: 477 bp
ATGAAGAGGTTGACTTGCAACCGATTGCCTTGTGTAATGTTTATCTTCAAAATATGTTCCAAGGCTATTGCGAATAGATTGAAGAAGGTTTCTCGACTCTATTATAGAAAAGTTTCTCTGAAGGTGTACTACATGAAGTGGAGCAAGGCAGCTTGTCTAAGTAAGAAGCTTCTAGAAGCGCGTATCGGCTCAAGCCGCACACATGCGTCCACGTGTCCAGTTGAGATGCGCTTCGGGTCCGTCTCTGCTACGGACGTCCGCACCGTTTTATGGTGCAGATTTTCGTCTGTTCGCCACCGTACGGGGCCGCGCGAGGGCGCGCCTCCACCCCAGCCGACTGATCTGGCTGGAAAACTGGAATTTGGCGGACTCACCGGGGATGGAAGGTGGTCGGGGAAGCTGCTGGAGTCGACTGGGGTGGAGGCACTCCCTCGCCGGCGCCATACAGTGGCGAACGGACGAAAATCCGCACAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

159

Amino Acids

17.72

Weight (kDa)

10.73

Isoelectric Point (pI)

38.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000118)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01361 FvH4_1g07161 FvH4_1g07431 FvH4_1g07821 FvH4_1g08223 FvH4_1g10041 FvH4_1g12132 FvH4_1g15053 FvH4_1g18161 FvH4_1g18400 FvH4_1g18931 FvH4_1g19242 FvH4_1g19461 FvH4_1g20550 FvH4_1g21381 FvH4_1g21542 FvH4_1g22102 FvH4_1g23991 FvH4_1g24542 FvH4_1g24951 FvH4_1g24960 FvH4_1g25272 FvH4_1g25552 FvH4_1g25771 FvH4_1g28771 FvH4_1g29201 FvH4_1g29611 FvH4_2g01181 FvH4_2g02491 FvH4_2g04621 FvH4_2g04631 FvH4_2g07460 FvH4_2g08540 FvH4_2g08550 FvH4_2g09292 FvH4_2g10501 FvH4_2g12101 FvH4_2g12220 FvH4_2g12551 FvH4_2g14071 FvH4_2g14241 FvH4_2g15041 FvH4_2g15311 FvH4_2g18971 FvH4_2g19220 FvH4_2g19260 FvH4_2g19611 FvH4_2g19652 FvH4_2g20211 FvH4_2g20231 FvH4_2g21541 FvH4_2g22380 FvH4_2g27712 FvH4_2g28171 FvH4_2g29879 FvH4_2g32391 FvH4_3g02171 FvH4_3g05531 FvH4_3g09750 FvH4_3g10310 FvH4_3g10460 FvH4_3g13172 FvH4_3g15232 FvH4_3g18481 FvH4_3g18621 FvH4_3g20504 FvH4_3g20812 FvH4_3g22320 FvH4_3g22930 FvH4_3g22940 FvH4_3g23752 FvH4_3g24791 FvH4_3g26411 FvH4_3g26432 FvH4_3g27201 FvH4_3g27862 FvH4_3g28871 FvH4_3g28954 FvH4_3g29131 FvH4_3g29832 FvH4_3g29922 FvH4_3g30190 FvH4_3g32231 FvH4_3g32250 FvH4_3g33460 FvH4_3g34670 FvH4_3g36982 FvH4_3g37001 FvH4_3g38252 FvH4_3g38772 FvH4_3g40141 FvH4_3g40181 FvH4_3g42521 FvH4_4g00090 FvH4_4g00290 FvH4_4g00301 FvH4_4g00530 FvH4_4g00823 FvH4_4g02300 FvH4_4g02450 FvH4_4g03360 FvH4_4g04481 FvH4_4g04761 FvH4_4g06301 FvH4_4g06630 FvH4_4g08312 FvH4_4g08552 FvH4_4g10053 FvH4_4g11971 FvH4_4g13211 FvH4_4g13511 FvH4_4g15351 FvH4_4g16360 FvH4_4g16601 FvH4_4g18462 FvH4_4g22911 FvH4_4g23221 FvH4_4g24301 FvH4_4g24721 FvH4_4g27905 FvH4_4g28971 FvH4_4g29540 FvH4_4g30720 FvH4_4g31521 FvH4_4g33371 FvH4_4g34111 FvH4_4g35740 FvH4_5g00131 FvH4_5g02530 FvH4_5g02550 FvH4_5g02560 FvH4_5g02580 FvH4_5g03783 FvH4_5g05681 FvH4_5g05681 FvH4_5g09371 FvH4_5g09381 FvH4_5g14611 FvH4_5g15341 FvH4_5g19801 FvH4_5g20110 FvH4_5g20911 FvH4_5g22230 FvH4_5g25751 FvH4_5g26070 FvH4_5g26471 FvH4_5g27072 FvH4_5g27471 FvH4_5g27471 FvH4_5g27998 FvH4_5g28291 FvH4_5g30951 FvH4_5g31082 FvH4_5g31890 FvH4_5g32251 FvH4_5g34112 FvH4_5g37184 FvH4_5g37993 FvH4_5g38271 FvH4_6g00153 FvH4_6g00640 FvH4_6g05921 FvH4_6g08591 FvH4_6g09511 FvH4_6g10331 FvH4_6g10401 FvH4_6g14161 FvH4_6g14171 FvH4_6g18481 FvH4_6g19721 FvH4_6g19980 FvH4_6g20104 FvH4_6g20112 FvH4_6g21261 FvH4_6g21651 FvH4_6g22051 FvH4_6g23141 FvH4_6g24822 FvH4_6g25082 FvH4_6g25391 FvH4_6g25560 FvH4_6g26350 FvH4_6g27031 FvH4_6g27810 FvH4_6g27971 FvH4_6g28331 FvH4_6g29391 FvH4_6g30781 FvH4_6g32221 FvH4_6g34680 FvH4_6g36181 FvH4_6g36551 FvH4_6g37491 FvH4_6g37663 FvH4_6g39590 FvH4_6g40582 FvH4_6g43843 FvH4_6g50551 FvH4_7g00240 FvH4_7g00731 FvH4_7g01031 FvH4_7g03301 FvH4_7g08180 FvH4_7g08180 FvH4_7g10631 FvH4_7g19710 FvH4_7g23892 FvH4_7g25280 FvH4_7g25551 FvH4_7g30121 FvH4_7g31931 FvH4_7g32672 FvH4_c21g00040 FvH4_c2g00053
prunus_persica Prupe.1G448800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322451 RchiOBHm_Chr5g0015171
rosa_laevigata RLG00000003077 RLG00000018186 RLG00000030343
rosa_multiflora Rmu_co8096726.1_g000001
rosa_roxburghii Rroxscaffold_157G00438380 Rroxscaffold_1G00001730 Rroxscaffold_3G00236310
rosa_rugosa Rorug02G0236500
rosa_samantha Rh4BG247300 Rh6BG286200 Rh6CG287300 Rh7DG257500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 258
AccB1I GGYRCC 1 cut(s) 438
AccB7I CCANNNNNTGG 1 cut(s) 448
AccI GTMKAC 1 cut(s) 410
AccII CGCG 4 cut(s) 181, 310, 312, 320
AciI CCGC 5 cut(s) 196, 259, 308, 366, 468
AcsI RAATTY 1 cut(s) 359
AcuI CTGAAG 1 cut(s) 140
AcvI CACGTG 1 cut(s) 213
AcyI GRCGYC 2 cut(s) 255, 439
AfaI GTAC 2 cut(s) 128, 301
AfiI CCNNNNNNNGG 4 cut(s) 270, 301, 314, 448
AflIII ACRYGT 1 cut(s) 212
AgsI TTSAA 2 cut(s) 49, 82
AluBI AGCT 3 cut(s) 152, 169, 400
AluI AGCT 3 cut(s) 152, 169, 400
Alw26I GTCTC 1 cut(s) 247
AoxI GGCC 1 cut(s) 305
ApeKI GCWGC 2 cut(s) 149, 400
ApoI RAATTY 1 cut(s) 359
AscI GGCGCGCC 1 cut(s) 318
Asp700I GAANNNNTTC 1 cut(s) 112
AspLEI GCGC 6 cut(s) 181, 231, 312, 320, 322, 441
AspS9I GGNCC 2 cut(s) 237, 305
AsuC2I CCSGG 1 cut(s) 376
AsuHPI GGTGA 1 cut(s) 364
AvaII GGWCC 1 cut(s) 237
BanI GGYRCC 1 cut(s) 438
BarI GAAGNNNNNNTAC 2 cut(s) 113, 145
BbrPI CACGTG 1 cut(s) 213
BbvI GCAGC 2 cut(s) 161, 387
BccI CCATC 1 cut(s) 374
BcnI CCSGG 1 cut(s) 376
BcoDI GTCTC 1 cut(s) 247
BfaI CTAG 1 cut(s) 173
BfoI RGCGCY 1 cut(s) 442
BisI GCNGC 4 cut(s) 150, 196, 308, 401
BlsI GCNGC 4 cut(s) 151, 197, 309, 402
Bme1390I CCNGG 1 cut(s) 376
Bme18I GGWCC 1 cut(s) 237
BmgT120I GGNCC 2 cut(s) 237, 305
BmiI GGNNCC 3 cut(s) 238, 306, 440
BmrFI CCNGG 1 cut(s) 376
BmrI ACTGGG 1 cut(s) 423
BmsI GCATC 1 cut(s) 216
BmuI ACTGGG 1 cut(s) 423
BpmI CTGGAG 1 cut(s) 425
BpuEI CTTGAG 1 cut(s) 175
BpuMI CCSGG 1 cut(s) 376
BsaAI YACGTR 1 cut(s) 213
BsaHI GRCGYC 2 cut(s) 255, 439
BsaJI CCNNGG 2 cut(s) 60, 375
Bsc4I CCNNNNNNNGG 4 cut(s) 270, 301, 314, 448
Bse118I RCCGGY 1 cut(s) 435
Bse1I ACTGG 3 cut(s) 218, 360, 418
BseDI CCNNGG 2 cut(s) 60, 375
BseGI GGATG 1 cut(s) 385
BseLI CCNNNNNNNGG 4 cut(s) 270, 301, 314, 448
BseNI ACTGG 3 cut(s) 218, 360, 418
BsePI GCGCGC 1 cut(s) 318
BseXI GCAGC 2 cut(s) 161, 387
BseYI CCCAGC 1 cut(s) 330
BsgI GTGCAG 1 cut(s) 295
Bsh1236I CGCG 4 cut(s) 181, 310, 312, 320
BshFI GGCC 1 cut(s) 307
BshNI GGYRCC 1 cut(s) 438
BsiSI CCGG 2 cut(s) 375, 436
BsiWI CGTACG 1 cut(s) 299
BslI CCNNNNNNNGG 4 cut(s) 270, 301, 314, 448
BsmAI GTCTC 1 cut(s) 247
BsmBI CGTCTC 1 cut(s) 247
BsnI GGCC 1 cut(s) 307
Bsp143I GATC 1 cut(s) 340
BspACI CCGC 5 cut(s) 196, 259, 308, 366, 468
BspANI GGCC 1 cut(s) 307
BspFNI CGCG 4 cut(s) 181, 310, 312, 320
BspLI GGNNCC 3 cut(s) 238, 306, 440
BspT107I GGYRCC 1 cut(s) 438
BsrFI RCCGGY 1 cut(s) 435
BsrI ACTGG 3 cut(s) 218, 360, 418
BssAI RCCGGY 1 cut(s) 435
BssECI CCNNGG 2 cut(s) 60, 375
BssHII GCGCGC 1 cut(s) 318
BssMI GATC 1 cut(s) 340
BssNI GRCGYC 2 cut(s) 255, 439
BssT1I CCWWGG 1 cut(s) 60
Bst4CI ACNGT 4 cut(s) 265, 299, 448, 474
BstACI GRCGYC 2 cut(s) 255, 439
BstBAI YACGTR 1 cut(s) 213
BstC8I GCNNGC 2 cut(s) 320, 437
BstDEI CTNAG 1 cut(s) 158
BstF5I GGATG 1 cut(s) 385
BstFNI CGCG 4 cut(s) 181, 310, 312, 320
BstH2I RGCGCY 1 cut(s) 442
BstHHI GCGC 6 cut(s) 181, 231, 312, 320, 322, 441
BstKTI GATC 1 cut(s) 343
BstMAI GTCTC 1 cut(s) 247
BstMBI GATC 1 cut(s) 340
BstMWI GCNNNNNNNGC 1 cut(s) 195
BstNSI RCATGY 1 cut(s) 206
BstSCI CCNGG 1 cut(s) 374
BstUI CGCG 4 cut(s) 181, 310, 312, 320
BstV1I GCAGC 2 cut(s) 161, 387
BsuRI GGCC 1 cut(s) 307
BtsCI GGATG 1 cut(s) 385
BtsIMutI CAGTG 1 cut(s) 453
Cac8I GCNNGC 2 cut(s) 320, 437
CfoI GCGC 6 cut(s) 181, 231, 312, 320, 322, 441
Cfr10I RCCGGY 1 cut(s) 435
Cfr13I GGNCC 2 cut(s) 237, 305
CseI GACGC 1 cut(s) 195
Csp6I GTAC 2 cut(s) 127, 300
CviAII CATG 2 cut(s) 133, 203
CviJI RGCY 9 cut(s) 65, 152, 169, 189, 195, 307, 334, 347, 400
CviKI_1 RGCY 9 cut(s) 65, 152, 169, 189, 195, 307, 334, 347, 400
CviQI GTAC 2 cut(s) 127, 300
DdeI CTNAG 1 cut(s) 158
DinI GGCGCC 1 cut(s) 440
DpnI GATC 1 cut(s) 342
DpnII GATC 1 cut(s) 340
EciI GGCGGA 1 cut(s) 381
Eco130I CCWWGG 1 cut(s) 60
Eco47I GGWCC 1 cut(s) 237
Eco57I CTGAAG 1 cut(s) 140
Eco72I CACGTG 1 cut(s) 213
EcoT14I CCWWGG 1 cut(s) 60
EgeI GGCGCC 1 cut(s) 440
EheI GGCGCC 1 cut(s) 440
ErhI CCWWGG 1 cut(s) 60
Esp3I CGTCTC 1 cut(s) 247
FaeI CATG 2 cut(s) 136, 206
FaiI YATR 6 cut(s) 55, 105, 134, 204, 271, 444
FatI CATG 2 cut(s) 132, 202
FblI GTMKAC 1 cut(s) 410
Fnu4HI GCNGC 4 cut(s) 150, 196, 308, 401
FokI GGATG 1 cut(s) 392
Fsp4HI GCNGC 4 cut(s) 150, 196, 308, 401
FspBI CTAG 1 cut(s) 173
GlaI GCGC 6 cut(s) 180, 230, 311, 319, 321, 440
GluI GCNGC 4 cut(s) 150, 196, 308, 401
GsaI CCCAGC 1 cut(s) 334
GsuI CTGGAG 1 cut(s) 425
HaeII RGCGCY 1 cut(s) 442
HaeIII GGCC 1 cut(s) 307
HapII CCGG 2 cut(s) 375, 436
HgaI GACGC 1 cut(s) 195
HhaI GCGC 6 cut(s) 181, 231, 312, 320, 322, 441
Hin1I GRCGYC 2 cut(s) 255, 439
Hin1II CATG 2 cut(s) 136, 206
Hin6I GCGC 6 cut(s) 179, 229, 310, 318, 320, 439
HinP1I GCGC 6 cut(s) 179, 229, 310, 318, 320, 439
HincII GTYRAC 2 cut(s) 12, 411
HindII GTYRAC 2 cut(s) 12, 411
HindIII AAGCTT 1 cut(s) 167
HinfI GANTC 3 cut(s) 96, 369, 407
HpaII CCGG 2 cut(s) 375, 436
HphI GGTGA 1 cut(s) 364
Hpy166II GTNNAC 4 cut(s) 12, 127, 210, 411
Hpy188I TCNGA 1 cut(s) 120
Hpy188III TCNNGA 2 cut(s) 93, 173
Hpy8I GTNNAC 4 cut(s) 12, 127, 210, 411
HpyAV CCTTC 3 cut(s) 79, 115, 378
HpyCH4III ACNGT 4 cut(s) 265, 299, 448, 474
HpyCH4IV ACGT 2 cut(s) 212, 255
HpyCH4V TGCA 2 cut(s) 18, 276
HpyF10VI GCNNNNNNNGC 1 cut(s) 195
HpyF3I CTNAG 1 cut(s) 158
HpySE526I ACGT 2 cut(s) 212, 255
Hsp92I GRCGYC 2 cut(s) 255, 439
Hsp92II CATG 2 cut(s) 136, 206
HspAI GCGC 6 cut(s) 179, 229, 310, 318, 320, 439
KasI GGCGCC 1 cut(s) 438
KroI GCCGGC 1 cut(s) 435
KroNI GCCGGC 1 cut(s) 437
Kzo9I GATC 1 cut(s) 340
LmnI GCTCC 1 cut(s) 141
LpnPI CCDG 9 cut(s) 231, 329, 333, 341, 344, 388, 389, 399, 449
Lsp1109I GCAGC 2 cut(s) 161, 387
LweI GCATC 1 cut(s) 216
MaeI CTAG 1 cut(s) 173
MaeII ACGT 2 cut(s) 212, 255
MalI GATC 1 cut(s) 342
MboI GATC 1 cut(s) 340
MboII GAAGA 3 cut(s) 16, 37, 94
MluCI AATT 1 cut(s) 359
Mly113I GGCGCC 1 cut(s) 439
MlyI GAGTC 3 cut(s) 90, 363, 416
MnlI CCTC 4 cut(s) 307, 333, 415, 441
MreI CGCCGGCG 1 cut(s) 435
MroNI GCCGGC 1 cut(s) 435
MroXI GAANNNNTTC 1 cut(s) 112
MspI CCGG 2 cut(s) 375, 436
MspR9I CCNGG 1 cut(s) 376
MvnI CGCG 4 cut(s) 181, 310, 312, 320
MwoI GCNNNNNNNGC 1 cut(s) 195
NaeI GCCGGC 1 cut(s) 437
NarI GGCGCC 1 cut(s) 439
NciI CCSGG 1 cut(s) 376
NdeII GATC 1 cut(s) 340
NgoMIV GCCGGC 1 cut(s) 435
NlaIII CATG 2 cut(s) 136, 206
NlaIV GGNNCC 3 cut(s) 238, 306, 440
NspI RCATGY 1 cut(s) 206
PalAI GGCGCGCC 1 cut(s) 318
PauI GCGCGC 1 cut(s) 318
PcsI WCGNNNNNNNCGW 1 cut(s) 261
PdiI GCCGGC 1 cut(s) 437
PdmI GAANNNNTTC 1 cut(s) 112
Pfl23II CGTACG 1 cut(s) 299
PflMI CCANNNNNTGG 1 cut(s) 448
PkrI GCNGC 4 cut(s) 151, 197, 309, 402
PleI GAGTC 3 cut(s) 90, 363, 415
PluTI GGCGCC 1 cut(s) 442
PmaCI CACGTG 1 cut(s) 213
PmlI CACGTG 1 cut(s) 213
PpsI GAGTC 3 cut(s) 90, 363, 415
Ppu21I YACGTR 1 cut(s) 213
PspCI CACGTG 1 cut(s) 213
PspFI CCCAGC 1 cut(s) 330
PspLI CGTACG 1 cut(s) 299
PspN4I GGNNCC 3 cut(s) 238, 306, 440
PspPI GGNCC 2 cut(s) 237, 305
PteI GCGCGC 1 cut(s) 318
RsaI GTAC 2 cut(s) 128, 301
RsaNI GTAC 2 cut(s) 127, 300
SalI GTCGAC 1 cut(s) 409
SatI GCNGC 4 cut(s) 150, 196, 308, 401
Sau3AI GATC 1 cut(s) 340
Sau96I GGNCC 2 cut(s) 237, 305
SchI GAGTC 3 cut(s) 90, 363, 416
ScrFI CCNGG 1 cut(s) 376
SetI ASST 9 cut(s) 11, 90, 126, 154, 171, 215, 258, 389, 402
SfaNI GCATC 1 cut(s) 216
SfoI GGCGCC 1 cut(s) 440
SgrAI CRCCGGYG 1 cut(s) 435
SgsI GGCGCGCC 1 cut(s) 318
SinI GGWCC 1 cut(s) 237
SmlI CTYRAG 1 cut(s) 190
SmoI CTYRAG 1 cut(s) 190
Sse9I AATT 1 cut(s) 359
SsiI CCGC 5 cut(s) 196, 259, 308, 366, 468
SspDI GGCGCC 1 cut(s) 438
SspMI CTAG 1 cut(s) 173
StyD4I CCNGG 1 cut(s) 374
StyI CCWWGG 1 cut(s) 60
TaaI ACNGT 4 cut(s) 265, 299, 448, 474
TaiI ACGT 2 cut(s) 215, 258
TaqI TCGA 2 cut(s) 94, 410
TasI AATT 1 cut(s) 359
TatI WGTACW 1 cut(s) 126
TauI GCSGC 2 cut(s) 198, 310
TscAI CASTG 1 cut(s) 453
TseI GCWGC 2 cut(s) 149, 400
TspDTI ATGAA 2 cut(s) 17, 149
TspGWI ACGGA 3 cut(s) 229, 266, 471
TspRI CASTG 1 cut(s) 453
Van91I CCANNNNNTGG 1 cut(s) 448
VpaK11BI GGWCC 1 cut(s) 237
XapI RAATTY 1 cut(s) 359
XbaI TCTAGA 1 cut(s) 172
XceI RCATGY 1 cut(s) 206
XmiI GTMKAC 1 cut(s) 410
XmnI GAANNNNTTC 1 cut(s) 112
XspI CTAG 1 cut(s) 173
ZraI GACGTC 1 cut(s) 256
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.