FvH4_2g21541

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000118
Physical Location & Seq
Forward (+)
17900205 .. 17901292
1088 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g21541.t1

Sequence Viewer

Length: 348 bp
ATGAGAGACGATCGATATGGGCAACTATCAGTAATAAGTAGCAGCAATATTATTCGATCCTTCGATGCGATACAAGCAATACGGCACCGGCGAGGGCGCGCCTCCACCCTAGCGGACTCCAGCAGCTTCCCCGACCACTTTCCATCCCCGGCGAGTCCGCCGAATTCCAGTTTTCCGGTTAGATTGACTTTGTTTGAAGTTTTGGGTGATCTGGCCGGAAAACTGGAATTCGGCAGACTCGCCAGGGAGGGAAAGTGGTTGGGGACGCTGCTGGAGTCCGCTGGGGTGGAGGCGCGCCCTCGCCGGCGCCGTACGGTGGCGAACGGAGGGACGTTCGCACCGCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

116

Amino Acids

12.59

Weight (kDa)

11.23

Isoelectric Point (pI)

68.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000118)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01361 FvH4_1g07161 FvH4_1g07431 FvH4_1g07821 FvH4_1g08223 FvH4_1g10041 FvH4_1g12132 FvH4_1g15053 FvH4_1g18161 FvH4_1g18400 FvH4_1g18931 FvH4_1g19242 FvH4_1g19461 FvH4_1g20550 FvH4_1g21381 FvH4_1g21542 FvH4_1g22102 FvH4_1g23991 FvH4_1g24542 FvH4_1g24951 FvH4_1g24960 FvH4_1g25272 FvH4_1g25552 FvH4_1g25771 FvH4_1g28771 FvH4_1g29201 FvH4_1g29611 FvH4_2g01181 FvH4_2g02491 FvH4_2g04621 FvH4_2g04631 FvH4_2g07460 FvH4_2g08540 FvH4_2g08550 FvH4_2g09292 FvH4_2g10501 FvH4_2g12101 FvH4_2g12220 FvH4_2g12551 FvH4_2g14071 FvH4_2g14241 FvH4_2g15041 FvH4_2g15311 FvH4_2g18971 FvH4_2g19220 FvH4_2g19260 FvH4_2g19611 FvH4_2g19652 FvH4_2g20211 FvH4_2g20231 FvH4_2g21541 FvH4_2g22380 FvH4_2g27712 FvH4_2g28171 FvH4_2g29879 FvH4_2g32391 FvH4_3g02171 FvH4_3g05531 FvH4_3g09750 FvH4_3g10310 FvH4_3g10460 FvH4_3g13172 FvH4_3g15232 FvH4_3g18481 FvH4_3g18621 FvH4_3g20504 FvH4_3g20812 FvH4_3g22320 FvH4_3g22930 FvH4_3g22940 FvH4_3g23752 FvH4_3g24791 FvH4_3g26411 FvH4_3g26432 FvH4_3g27201 FvH4_3g27862 FvH4_3g28871 FvH4_3g28954 FvH4_3g29131 FvH4_3g29832 FvH4_3g29922 FvH4_3g30190 FvH4_3g32231 FvH4_3g32250 FvH4_3g33460 FvH4_3g34670 FvH4_3g36982 FvH4_3g37001 FvH4_3g38252 FvH4_3g38772 FvH4_3g40141 FvH4_3g40181 FvH4_3g42521 FvH4_4g00090 FvH4_4g00290 FvH4_4g00301 FvH4_4g00530 FvH4_4g00823 FvH4_4g02300 FvH4_4g02450 FvH4_4g03360 FvH4_4g04481 FvH4_4g04761 FvH4_4g06301 FvH4_4g06630 FvH4_4g08312 FvH4_4g08552 FvH4_4g10053 FvH4_4g11971 FvH4_4g13211 FvH4_4g13511 FvH4_4g15351 FvH4_4g16360 FvH4_4g16601 FvH4_4g18462 FvH4_4g22911 FvH4_4g23221 FvH4_4g24301 FvH4_4g24721 FvH4_4g27905 FvH4_4g28971 FvH4_4g29540 FvH4_4g30720 FvH4_4g31521 FvH4_4g33371 FvH4_4g34111 FvH4_4g35740 FvH4_5g00131 FvH4_5g02530 FvH4_5g02550 FvH4_5g02560 FvH4_5g02580 FvH4_5g03783 FvH4_5g05681 FvH4_5g05681 FvH4_5g09371 FvH4_5g09381 FvH4_5g14611 FvH4_5g15341 FvH4_5g19801 FvH4_5g20110 FvH4_5g20911 FvH4_5g22230 FvH4_5g25751 FvH4_5g26070 FvH4_5g26471 FvH4_5g27072 FvH4_5g27471 FvH4_5g27471 FvH4_5g27998 FvH4_5g28291 FvH4_5g30951 FvH4_5g31082 FvH4_5g31890 FvH4_5g32251 FvH4_5g34112 FvH4_5g37184 FvH4_5g37993 FvH4_5g38271 FvH4_6g00153 FvH4_6g00640 FvH4_6g05921 FvH4_6g08591 FvH4_6g09511 FvH4_6g10331 FvH4_6g10401 FvH4_6g14161 FvH4_6g14171 FvH4_6g18481 FvH4_6g19721 FvH4_6g19980 FvH4_6g20104 FvH4_6g20112 FvH4_6g21261 FvH4_6g21651 FvH4_6g22051 FvH4_6g23141 FvH4_6g24822 FvH4_6g25082 FvH4_6g25391 FvH4_6g25560 FvH4_6g26350 FvH4_6g27031 FvH4_6g27810 FvH4_6g27971 FvH4_6g28331 FvH4_6g29391 FvH4_6g30781 FvH4_6g32221 FvH4_6g34680 FvH4_6g36181 FvH4_6g36551 FvH4_6g37491 FvH4_6g37663 FvH4_6g39590 FvH4_6g40582 FvH4_6g43843 FvH4_6g50551 FvH4_7g00240 FvH4_7g00731 FvH4_7g01031 FvH4_7g03301 FvH4_7g08180 FvH4_7g08180 FvH4_7g10631 FvH4_7g19710 FvH4_7g23892 FvH4_7g25280 FvH4_7g25551 FvH4_7g30121 FvH4_7g31931 FvH4_7g32672 FvH4_c21g00040 FvH4_c2g00053
prunus_persica Prupe.1G448800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322451 RchiOBHm_Chr5g0015171
rosa_laevigata RLG00000003077 RLG00000018186 RLG00000030343
rosa_multiflora Rmu_co8096726.1_g000001
rosa_roxburghii Rroxscaffold_157G00438380 Rroxscaffold_1G00001730 Rroxscaffold_3G00236310
rosa_rugosa Rorug02G0236500
rosa_samantha Rh4BG247300 Rh6BG286200 Rh6CG287300 Rh7DG257500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 84, 306
AccII CGCG 2 cut(s) 99, 295
AciI CCGC 4 cut(s) 113, 158, 279, 341
AclWI GGATC 1 cut(s) 51
AcoI YGGCCR 1 cut(s) 213
AcsI RAATTY 2 cut(s) 163, 227
AcyI GRCGYC 1 cut(s) 307
AfaI GTAC 1 cut(s) 313
AfiI CCNNNNNNNGG 1 cut(s) 316
AgsI TTSAA 1 cut(s) 197
AjnI CCWGG 1 cut(s) 242
AluBI AGCT 1 cut(s) 126
AluI AGCT 1 cut(s) 126
AlwI GGATC 1 cut(s) 51
AoxI GGCC 1 cut(s) 213
ApeKI GCWGC 3 cut(s) 42, 123, 268
ApoI RAATTY 2 cut(s) 163, 227
AscI GGCGCGCC 2 cut(s) 97, 293
AspLEI GCGC 5 cut(s) 99, 101, 295, 297, 309
AsuC2I CCSGG 1 cut(s) 149
AsuHPI GGTGA 1 cut(s) 218
BanI GGYRCC 2 cut(s) 84, 306
BbvI GCAGC 3 cut(s) 54, 135, 255
BccI CCATC 1 cut(s) 151
BceAI ACGGC 2 cut(s) 98, 294
BciT130I CCWGG 1 cut(s) 244
BcnI CCSGG 1 cut(s) 149
BfaI CTAG 1 cut(s) 110
BfoI RGCGCY 1 cut(s) 310
BisI GCNGC 3 cut(s) 43, 124, 269
BlsI GCNGC 3 cut(s) 44, 125, 270
Bme1390I CCNGG 2 cut(s) 149, 244
BmiI GGNNCC 2 cut(s) 86, 308
BmrFI CCNGG 2 cut(s) 149, 244
BmsI GCATC 1 cut(s) 55
BpmI CTGGAG 2 cut(s) 103, 293
BpuMI CCSGG 1 cut(s) 149
Bsa29I ATCGAT 1 cut(s) 13
BsaHI GRCGYC 1 cut(s) 307
BsaJI CCNNGG 2 cut(s) 147, 243
BsaWI WCCGGW 1 cut(s) 175
BsaXI ACNNNNNCTCC 2 cut(s) 239, 269
Bsc4I CCNNNNNNNGG 1 cut(s) 316
Bse118I RCCGGY 2 cut(s) 87, 303
Bse1I ACTGG 2 cut(s) 168, 228
BseBI CCWGG 1 cut(s) 244
BseCI ATCGAT 1 cut(s) 13
BseDI CCNNGG 2 cut(s) 147, 243
BseGI GGATG 1 cut(s) 143
BseLI CCNNNNNNNGG 1 cut(s) 316
BseNI ACTGG 2 cut(s) 168, 228
BsePI GCGCGC 2 cut(s) 97, 293
BseXI GCAGC 3 cut(s) 54, 135, 255
BseYI CCCAGC 1 cut(s) 281
Bsh1236I CGCG 2 cut(s) 99, 295
Bsh1285I CGRYCG 1 cut(s) 13
BshFI GGCC 1 cut(s) 215
BshNI GGYRCC 2 cut(s) 84, 306
BshVI ATCGAT 1 cut(s) 13
BsiEI CGRYCG 1 cut(s) 13
BsiSI CCGG 5 cut(s) 88, 149, 176, 216, 304
BsiWI CGTACG 1 cut(s) 311
BslFI GGGAC 2 cut(s) 277, 343
BslI CCNNNNNNNGG 1 cut(s) 316
BsmFI GGGAC 2 cut(s) 277, 343
BsnI GGCC 1 cut(s) 215
Bsp143I GATC 3 cut(s) 10, 56, 208
BspACI CCGC 4 cut(s) 113, 158, 279, 341
BspANI GGCC 1 cut(s) 215
BspDI ATCGAT 1 cut(s) 13
BspFNI CGCG 2 cut(s) 99, 295
BspLI GGNNCC 2 cut(s) 86, 308
BspPI GGATC 1 cut(s) 51
BspT107I GGYRCC 2 cut(s) 84, 306
BsrFI RCCGGY 2 cut(s) 87, 303
BsrI ACTGG 2 cut(s) 168, 228
BssAI RCCGGY 2 cut(s) 87, 303
BssECI CCNNGG 2 cut(s) 147, 243
BssHII GCGCGC 2 cut(s) 97, 293
BssMI GATC 3 cut(s) 10, 56, 208
BssNI GRCGYC 1 cut(s) 307
Bst2UI CCWGG 1 cut(s) 244
Bst4CI ACNGT 1 cut(s) 316
BstACI GRCGYC 1 cut(s) 307
BstC8I GCNNGC 3 cut(s) 99, 295, 305
BstF5I GGATG 1 cut(s) 143
BstFNI CGCG 2 cut(s) 99, 295
BstH2I RGCGCY 1 cut(s) 310
BstHHI GCGC 5 cut(s) 99, 101, 295, 297, 309
BstKTI GATC 3 cut(s) 13, 59, 211
BstMBI GATC 3 cut(s) 10, 56, 208
BstMCI CGRYCG 1 cut(s) 13
BstMWI GCNNNNNNNGC 1 cut(s) 74
BstNI CCWGG 1 cut(s) 244
BstSCI CCNGG 2 cut(s) 147, 242
BstUI CGCG 2 cut(s) 99, 295
BstV1I GCAGC 3 cut(s) 54, 135, 255
Bsu15I ATCGAT 1 cut(s) 13
BsuRI GGCC 1 cut(s) 215
BsuTUI ATCGAT 1 cut(s) 13
BtsCI GGATG 1 cut(s) 143
Cac8I GCNNGC 3 cut(s) 99, 295, 305
CfoI GCGC 5 cut(s) 99, 101, 295, 297, 309
Cfr10I RCCGGY 2 cut(s) 87, 303
ClaI ATCGAT 1 cut(s) 13
CseI GACGC 1 cut(s) 274
Csp6I GTAC 1 cut(s) 312
CviJI RGCY 2 cut(s) 126, 215
CviKI_1 RGCY 2 cut(s) 126, 215
CviQI GTAC 1 cut(s) 312
DinI GGCGCC 1 cut(s) 308
DpnI GATC 3 cut(s) 12, 58, 210
DpnII GATC 3 cut(s) 10, 56, 208
EaeI YGGCCR 1 cut(s) 213
EciI GGCGGA 1 cut(s) 147
EcoRI GAATTC 2 cut(s) 163, 227
EcoRII CCWGG 1 cut(s) 242
EgeI GGCGCC 1 cut(s) 308
EheI GGCGCC 1 cut(s) 308
FaiI YATR 1 cut(s) 18
FaqI GGGAC 2 cut(s) 277, 343
Fnu4HI GCNGC 3 cut(s) 43, 124, 269
FokI GGATG 1 cut(s) 130
Fsp4HI GCNGC 3 cut(s) 43, 124, 269
FspBI CTAG 1 cut(s) 110
GlaI GCGC 5 cut(s) 98, 100, 294, 296, 308
GluI GCNGC 3 cut(s) 43, 124, 269
GsaI CCCAGC 1 cut(s) 285
GsuI CTGGAG 2 cut(s) 103, 293
HaeII RGCGCY 1 cut(s) 310
HaeIII GGCC 1 cut(s) 215
HapII CCGG 5 cut(s) 88, 149, 176, 216, 304
HgaI GACGC 1 cut(s) 274
HhaI GCGC 5 cut(s) 99, 101, 295, 297, 309
Hin1I GRCGYC 1 cut(s) 307
Hin6I GCGC 5 cut(s) 97, 99, 293, 295, 307
HinP1I GCGC 5 cut(s) 97, 99, 293, 295, 307
HinfI GANTC 4 cut(s) 116, 154, 237, 275
HpaII CCGG 5 cut(s) 88, 149, 176, 216, 304
HphI GGTGA 1 cut(s) 218
HpyAV CCTTC 1 cut(s) 70
HpyCH4III ACNGT 1 cut(s) 316
HpyCH4IV ACGT 1 cut(s) 332
HpyF10VI GCNNNNNNNGC 1 cut(s) 74
HpySE526I ACGT 1 cut(s) 332
Hsp92I GRCGYC 1 cut(s) 307
HspAI GCGC 5 cut(s) 97, 99, 293, 295, 307
KasI GGCGCC 1 cut(s) 306
KroI GCCGGC 1 cut(s) 303
KroNI GCCGGC 1 cut(s) 305
Kzo9I GATC 3 cut(s) 10, 56, 208
Lsp1109I GCAGC 3 cut(s) 54, 135, 255
LweI GCATC 1 cut(s) 55
MaeI CTAG 1 cut(s) 110
MaeII ACGT 1 cut(s) 332
MalI GATC 3 cut(s) 12, 58, 210
MboI GATC 3 cut(s) 10, 56, 208
MluCI AATT 2 cut(s) 163, 227
Mly113I GGCGCC 1 cut(s) 307
MlyI GAGTC 4 cut(s) 110, 163, 231, 284
MnlI CCTC 6 cut(s) 86, 112, 241, 283, 309, 320
MreI CGCCGGCG 1 cut(s) 303
MroNI GCCGGC 1 cut(s) 303
MseI TTAA 1 cut(s) 346
MspA1I CMGCKG 1 cut(s) 281
MspI CCGG 5 cut(s) 88, 149, 176, 216, 304
MspR9I CCNGG 2 cut(s) 149, 244
MvaI CCWGG 1 cut(s) 244
MvnI CGCG 2 cut(s) 99, 295
MwoI GCNNNNNNNGC 1 cut(s) 74
NaeI GCCGGC 1 cut(s) 305
NarI GGCGCC 1 cut(s) 307
NciI CCSGG 1 cut(s) 149
NdeII GATC 3 cut(s) 10, 56, 208
NgoMIV GCCGGC 1 cut(s) 303
NlaIV GGNNCC 2 cut(s) 86, 308
PalAI GGCGCGCC 2 cut(s) 97, 293
PauI GCGCGC 2 cut(s) 97, 293
PcsI WCGNNNNNNNCGW 2 cut(s) 88, 307
PdiI GCCGGC 1 cut(s) 305
Pfl23II CGTACG 1 cut(s) 311
PkrI GCNGC 3 cut(s) 44, 125, 270
Ple19I CGATCG 1 cut(s) 13
PleI GAGTC 4 cut(s) 110, 162, 231, 283
PluTI GGCGCC 1 cut(s) 310
PpsI GAGTC 4 cut(s) 110, 162, 231, 283
Psp6I CCWGG 1 cut(s) 242
PspFI CCCAGC 1 cut(s) 281
PspGI CCWGG 1 cut(s) 242
PspLI CGTACG 1 cut(s) 311
PspN4I GGNNCC 2 cut(s) 86, 308
PteI GCGCGC 2 cut(s) 97, 293
PvuI CGATCG 1 cut(s) 13
RsaI GTAC 1 cut(s) 313
RsaNI GTAC 1 cut(s) 312
SaqAI TTAA 1 cut(s) 346
SatI GCNGC 3 cut(s) 43, 124, 269
Sau3AI GATC 3 cut(s) 10, 56, 208
SchI GAGTC 4 cut(s) 110, 163, 231, 284
ScrFI CCNGG 2 cut(s) 149, 244
SetI ASST 2 cut(s) 128, 335
SfaNI GCATC 1 cut(s) 55
SfoI GGCGCC 1 cut(s) 308
SgrAI CRCCGGYG 2 cut(s) 87, 303
SgsI GGCGCGCC 2 cut(s) 97, 293
Sse9I AATT 2 cut(s) 163, 227
SsiI CCGC 4 cut(s) 113, 158, 279, 341
SspDI GGCGCC 1 cut(s) 306
SspI AATATT 1 cut(s) 49
SspMI CTAG 1 cut(s) 110
StyD4I CCNGG 2 cut(s) 147, 242
TaaI ACNGT 1 cut(s) 316
TaiI ACGT 1 cut(s) 335
TaqI TCGA 3 cut(s) 13, 55, 63
TasI AATT 2 cut(s) 163, 227
Tru1I TTAA 1 cut(s) 346
Tru9I TTAA 1 cut(s) 346
TseI GCWGC 3 cut(s) 42, 123, 268
TspGWI ACGGA 1 cut(s) 339
XapI RAATTY 2 cut(s) 163, 227
XspI CTAG 1 cut(s) 110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.