FvH4_6g36551

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000118
Physical Location & Seq
Forward (+)
28784672 .. 28793942
9271 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g36551.t1

Sequence Viewer

Length: 477 bp
ATGGAAGAAAACAAGACAAGTGATGTGTTGACGACGTCGAGAAGGTCCTATTGCTGGTGGTTCACCGTTGAAAAGCCACCGGAGACGGACTTATTCAGGGTCGACGGTTCGTCGCTCTCGGTCGCGAGCTCAATCCACACAGAGTTCCAAATAAAGGAATGTGGTTGGAATGATCCGCCGAATTCCAGTTTTCCGGCGCGATCGACTTTATTTGAAGTTTTGGGTGATCTCGCTGGAAAACTGAAAAAGAACGAACTCACCGGGGATGGAAAGTGGTTGGGGAAGCTGTCGGAGTTCGCTGGGGTGGAGGCGCGCCCTCGCGCGGCGCCGTACAGTGGCGAACGGACGGAAATCCACACCGACCCATTCCGCCGTAACACGATATTGTCCGCTTTGGGCCCACCGGCCCTCACGGTTTTGTTTCCGGCAGCTCAGGAGCAGCTTCCCAGTAGGTCACCCATCTTGGGATTGCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

159

Amino Acids

17.48

Weight (kDa)

5.74

Isoelectric Point (pI)

65.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000118)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01361 FvH4_1g07161 FvH4_1g07431 FvH4_1g07821 FvH4_1g08223 FvH4_1g10041 FvH4_1g12132 FvH4_1g15053 FvH4_1g18161 FvH4_1g18400 FvH4_1g18931 FvH4_1g19242 FvH4_1g19461 FvH4_1g20550 FvH4_1g21381 FvH4_1g21542 FvH4_1g22102 FvH4_1g23991 FvH4_1g24542 FvH4_1g24951 FvH4_1g24960 FvH4_1g25272 FvH4_1g25552 FvH4_1g25771 FvH4_1g28771 FvH4_1g29201 FvH4_1g29611 FvH4_2g01181 FvH4_2g02491 FvH4_2g04621 FvH4_2g04631 FvH4_2g07460 FvH4_2g08540 FvH4_2g08550 FvH4_2g09292 FvH4_2g10501 FvH4_2g12101 FvH4_2g12220 FvH4_2g12551 FvH4_2g14071 FvH4_2g14241 FvH4_2g15041 FvH4_2g15311 FvH4_2g18971 FvH4_2g19220 FvH4_2g19260 FvH4_2g19611 FvH4_2g19652 FvH4_2g20211 FvH4_2g20231 FvH4_2g21541 FvH4_2g22380 FvH4_2g27712 FvH4_2g28171 FvH4_2g29879 FvH4_2g32391 FvH4_3g02171 FvH4_3g05531 FvH4_3g09750 FvH4_3g10310 FvH4_3g10460 FvH4_3g13172 FvH4_3g15232 FvH4_3g18481 FvH4_3g18621 FvH4_3g20504 FvH4_3g20812 FvH4_3g22320 FvH4_3g22930 FvH4_3g22940 FvH4_3g23752 FvH4_3g24791 FvH4_3g26411 FvH4_3g26432 FvH4_3g27201 FvH4_3g27862 FvH4_3g28871 FvH4_3g28954 FvH4_3g29131 FvH4_3g29832 FvH4_3g29922 FvH4_3g30190 FvH4_3g32231 FvH4_3g32250 FvH4_3g33460 FvH4_3g34670 FvH4_3g36982 FvH4_3g37001 FvH4_3g38252 FvH4_3g38772 FvH4_3g40141 FvH4_3g40181 FvH4_3g42521 FvH4_4g00090 FvH4_4g00290 FvH4_4g00301 FvH4_4g00530 FvH4_4g00823 FvH4_4g02300 FvH4_4g02450 FvH4_4g03360 FvH4_4g04481 FvH4_4g04761 FvH4_4g06301 FvH4_4g06630 FvH4_4g08312 FvH4_4g08552 FvH4_4g10053 FvH4_4g11971 FvH4_4g13211 FvH4_4g13511 FvH4_4g15351 FvH4_4g16360 FvH4_4g16601 FvH4_4g18462 FvH4_4g22911 FvH4_4g23221 FvH4_4g24301 FvH4_4g24721 FvH4_4g27905 FvH4_4g28971 FvH4_4g29540 FvH4_4g30720 FvH4_4g31521 FvH4_4g33371 FvH4_4g34111 FvH4_4g35740 FvH4_5g00131 FvH4_5g02530 FvH4_5g02550 FvH4_5g02560 FvH4_5g02580 FvH4_5g03783 FvH4_5g05681 FvH4_5g05681 FvH4_5g09371 FvH4_5g09381 FvH4_5g14611 FvH4_5g15341 FvH4_5g19801 FvH4_5g20110 FvH4_5g20911 FvH4_5g22230 FvH4_5g25751 FvH4_5g26070 FvH4_5g26471 FvH4_5g27072 FvH4_5g27471 FvH4_5g27471 FvH4_5g27998 FvH4_5g28291 FvH4_5g30951 FvH4_5g31082 FvH4_5g31890 FvH4_5g32251 FvH4_5g34112 FvH4_5g37184 FvH4_5g37993 FvH4_5g38271 FvH4_6g00153 FvH4_6g00640 FvH4_6g05921 FvH4_6g08591 FvH4_6g09511 FvH4_6g10331 FvH4_6g10401 FvH4_6g14161 FvH4_6g14171 FvH4_6g18481 FvH4_6g19721 FvH4_6g19980 FvH4_6g20104 FvH4_6g20112 FvH4_6g21261 FvH4_6g21651 FvH4_6g22051 FvH4_6g23141 FvH4_6g24822 FvH4_6g25082 FvH4_6g25391 FvH4_6g25560 FvH4_6g26350 FvH4_6g27031 FvH4_6g27810 FvH4_6g27971 FvH4_6g28331 FvH4_6g29391 FvH4_6g30781 FvH4_6g32221 FvH4_6g34680 FvH4_6g36181 FvH4_6g36551 FvH4_6g37491 FvH4_6g37663 FvH4_6g39590 FvH4_6g40582 FvH4_6g43843 FvH4_6g50551 FvH4_7g00240 FvH4_7g00731 FvH4_7g01031 FvH4_7g03301 FvH4_7g08180 FvH4_7g08180 FvH4_7g10631 FvH4_7g19710 FvH4_7g23892 FvH4_7g25280 FvH4_7g25551 FvH4_7g30121 FvH4_7g31931 FvH4_7g32672 FvH4_c21g00040 FvH4_c2g00053
prunus_persica Prupe.1G448800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322451 RchiOBHm_Chr5g0015171
rosa_laevigata RLG00000003077 RLG00000018186 RLG00000030343
rosa_multiflora Rmu_co8096726.1_g000001
rosa_roxburghii Rroxscaffold_157G00438380 Rroxscaffold_1G00001730 Rroxscaffold_3G00236310
rosa_rugosa Rorug02G0236500
rosa_samantha Rh4BG247300 Rh6BG286200 Rh6CG287300 Rh7DG257500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 38
AccB1I GGYRCC 1 cut(s) 325
AccI GTMKAC 1 cut(s) 102
AccII CGCG 5 cut(s) 125, 199, 313, 321, 323
AciI CCGC 4 cut(s) 176, 323, 370, 390
AclWI GGATC 1 cut(s) 167
AcsI RAATTY 1 cut(s) 181
AcyI GRCGYC 2 cut(s) 35, 326
AfaI GTAC 1 cut(s) 332
AfiI CCNNNNNNNGG 5 cut(s) 54, 154, 322, 335, 464
AgsI TTSAA 2 cut(s) 71, 215
AhdI GACNNNNNGTC 1 cut(s) 109
AluBI AGCT 4 cut(s) 129, 286, 431, 442
AluI AGCT 4 cut(s) 129, 286, 431, 442
Alw21I GWGCWC 1 cut(s) 131
Alw26I GTCTC 1 cut(s) 77
AlwI GGATC 1 cut(s) 167
AoxI GGCC 2 cut(s) 397, 405
ApaI GGGCCC 1 cut(s) 401
ApeKI GCWGC 2 cut(s) 428, 439
ApoI RAATTY 1 cut(s) 181
AscI GGCGCGCC 1 cut(s) 311
AspLEI GCGC 5 cut(s) 199, 313, 315, 323, 328
AspS9I GGNCC 4 cut(s) 45, 397, 398, 406
AsuC2I CCSGG 1 cut(s) 262
AsuHPI GGTGA 4 cut(s) 55, 236, 250, 447
AvaII GGWCC 1 cut(s) 45
BaeGI GKGCMC 1 cut(s) 401
BanI GGYRCC 1 cut(s) 325
BanII GRGCYC 2 cut(s) 131, 401
Bbv12I GWGCWC 1 cut(s) 131
BbvI GCAGC 2 cut(s) 440, 451
BccI CCATC 2 cut(s) 260, 467
BceAI ACGGC 2 cut(s) 313, 357
BcnI CCSGG 1 cut(s) 262
BcoDI GTCTC 1 cut(s) 77
BfaI CTAG 1 cut(s) 475
BfoI RGCGCY 1 cut(s) 329
BisI GCNGC 3 cut(s) 324, 429, 440
BlsI GCNGC 3 cut(s) 325, 430, 441
Bme1390I CCNGG 1 cut(s) 262
Bme18I GGWCC 1 cut(s) 45
BmeRI GACNNNNNGTC 1 cut(s) 109
BmgT120I GGNCC 4 cut(s) 45, 397, 398, 406
BmiI GGNNCC 2 cut(s) 327, 399
BmrFI CCNGG 1 cut(s) 262
BmrI ACTGGG 1 cut(s) 441
BmuI ACTGGG 1 cut(s) 441
Bpu10I CCTNAGC 1 cut(s) 432
BpuMI CCSGG 1 cut(s) 262
BsaHI GRCGYC 2 cut(s) 35, 326
BsaJI CCNNGG 1 cut(s) 261
BsaWI WCCGGW 1 cut(s) 79
Bsc4I CCNNNNNNNGG 5 cut(s) 54, 154, 322, 335, 464
Bse118I RCCGGY 1 cut(s) 403
Bse1I ACTGG 2 cut(s) 186, 447
BseDI CCNNGG 1 cut(s) 261
BseGI GGATG 1 cut(s) 271
BseLI CCNNNNNNNGG 5 cut(s) 54, 154, 322, 335, 464
BseMII CTCAG 1 cut(s) 446
BseNI ACTGG 2 cut(s) 186, 447
BsePI GCGCGC 1 cut(s) 311
BseSI GKGCMC 1 cut(s) 401
BseXI GCAGC 2 cut(s) 440, 451
BseYI CCCAGC 1 cut(s) 299
Bsh1236I CGCG 5 cut(s) 125, 199, 313, 321, 323
Bsh1285I CGRYCG 2 cut(s) 123, 203
BshFI GGCC 2 cut(s) 399, 407
BshNI GGYRCC 1 cut(s) 325
BsiEI CGRYCG 2 cut(s) 123, 203
BsiHKAI GWGCWC 1 cut(s) 131
BsiSI CCGG 5 cut(s) 80, 194, 261, 404, 425
BslI CCNNNNNNNGG 5 cut(s) 54, 154, 322, 335, 464
BsmAI GTCTC 1 cut(s) 77
BsmBI CGTCTC 1 cut(s) 77
BsnI GGCC 2 cut(s) 399, 407
Bsp120I GGGCCC 1 cut(s) 397
Bsp1286I GDGCHC 2 cut(s) 131, 401
Bsp143I GATC 3 cut(s) 172, 200, 226
Bsp68I TCGCGA 1 cut(s) 125
BspACI CCGC 4 cut(s) 176, 323, 370, 390
BspANI GGCC 2 cut(s) 399, 407
BspCNI CTCAG 1 cut(s) 445
BspFNI CGCG 5 cut(s) 125, 199, 313, 321, 323
BspLI GGNNCC 2 cut(s) 327, 399
BspPI GGATC 1 cut(s) 167
BspT107I GGYRCC 1 cut(s) 325
BsrFI RCCGGY 1 cut(s) 403
BsrI ACTGG 2 cut(s) 186, 447
BssAI RCCGGY 1 cut(s) 403
BssECI CCNNGG 1 cut(s) 261
BssHII GCGCGC 1 cut(s) 311
BssMI GATC 3 cut(s) 172, 200, 226
BssNI GRCGYC 2 cut(s) 35, 326
Bst4CI ACNGT 4 cut(s) 67, 107, 335, 415
BstACI GRCGYC 2 cut(s) 35, 326
BstC8I GCNNGC 2 cut(s) 127, 313
BstDEI CTNAG 1 cut(s) 432
BstEII GGTNACC 1 cut(s) 453
BstF5I GGATG 1 cut(s) 271
BstFNI CGCG 5 cut(s) 125, 199, 313, 321, 323
BstH2I RGCGCY 1 cut(s) 329
BstHHI GCGC 5 cut(s) 199, 313, 315, 323, 328
BstKTI GATC 3 cut(s) 175, 203, 229
BstMAI GTCTC 1 cut(s) 77
BstMBI GATC 3 cut(s) 172, 200, 226
BstMCI CGRYCG 2 cut(s) 123, 203
BstPI GGTNACC 1 cut(s) 453
BstSCI CCNGG 1 cut(s) 260
BstSLI GKGCMC 1 cut(s) 401
BstUI CGCG 5 cut(s) 125, 199, 313, 321, 323
BstV1I GCAGC 2 cut(s) 440, 451
BsuRI GGCC 2 cut(s) 399, 407
BtsCI GGATG 1 cut(s) 271
BtsIMutI CAGTG 1 cut(s) 340
BtuMI TCGCGA 1 cut(s) 125
Cac8I GCNNGC 2 cut(s) 127, 313
CfoI GCGC 5 cut(s) 199, 313, 315, 323, 328
Cfr10I RCCGGY 1 cut(s) 403
Cfr13I GGNCC 4 cut(s) 45, 397, 398, 406
Csp6I GTAC 1 cut(s) 331
CviJI RGCY 7 cut(s) 76, 129, 286, 399, 407, 431, 442
CviKI_1 RGCY 7 cut(s) 76, 129, 286, 399, 407, 431, 442
CviQI GTAC 1 cut(s) 331
DdeI CTNAG 1 cut(s) 432
DinI GGCGCC 1 cut(s) 327
DpnI GATC 3 cut(s) 174, 202, 228
DpnII GATC 3 cut(s) 172, 200, 226
DriI GACNNNNNGTC 1 cut(s) 109
Eam1105I GACNNNNNGTC 1 cut(s) 109
EciI GGCGGA 2 cut(s) 165, 359
Ecl136II GAGCTC 1 cut(s) 129
Eco24I GRGCYC 2 cut(s) 131, 401
Eco47I GGWCC 1 cut(s) 45
Eco53kI GAGCTC 1 cut(s) 129
Eco91I GGTNACC 1 cut(s) 453
EcoICRI GAGCTC 1 cut(s) 129
EcoO109I RGGNCCY 1 cut(s) 45
EcoO65I GGTNACC 1 cut(s) 453
EcoRI GAATTC 1 cut(s) 181
EcoT38I GRGCYC 2 cut(s) 131, 401
EgeI GGCGCC 1 cut(s) 327
EheI GGCGCC 1 cut(s) 327
Esp3I CGTCTC 1 cut(s) 77
FblI GTMKAC 1 cut(s) 102
Fnu4HI GCNGC 3 cut(s) 324, 429, 440
FokI GGATG 1 cut(s) 278
FriOI GRGCYC 2 cut(s) 131, 401
Fsp4HI GCNGC 3 cut(s) 324, 429, 440
FspBI CTAG 1 cut(s) 475
GlaI GCGC 5 cut(s) 198, 312, 314, 322, 327
GluI GCNGC 3 cut(s) 324, 429, 440
GsaI CCCAGC 1 cut(s) 303
HaeII RGCGCY 1 cut(s) 329
HaeIII GGCC 2 cut(s) 399, 407
HapII CCGG 5 cut(s) 80, 194, 261, 404, 425
HhaI GCGC 5 cut(s) 199, 313, 315, 323, 328
Hin1I GRCGYC 2 cut(s) 35, 326
Hin6I GCGC 5 cut(s) 197, 311, 313, 321, 326
HinP1I GCGC 5 cut(s) 197, 311, 313, 321, 326
HincII GTYRAC 2 cut(s) 30, 103
HindII GTYRAC 2 cut(s) 30, 103
HpaII CCGG 5 cut(s) 80, 194, 261, 404, 425
HphI GGTGA 4 cut(s) 55, 236, 250, 447
Hpy166II GTNNAC 3 cut(s) 30, 63, 103
Hpy188I TCNGA 1 cut(s) 292
Hpy188III TCNNGA 3 cut(s) 39, 124, 434
Hpy8I GTNNAC 3 cut(s) 30, 63, 103
Hpy99I CGWCG 4 cut(s) 37, 40, 107, 115
HpyAV CCTTC 1 cut(s) 36
HpyCH4III ACNGT 4 cut(s) 67, 107, 335, 415
HpyCH4IV ACGT 1 cut(s) 35
HpyF3I CTNAG 1 cut(s) 432
HpySE526I ACGT 1 cut(s) 35
Hsp92I GRCGYC 2 cut(s) 35, 326
HspAI GCGC 5 cut(s) 197, 311, 313, 321, 326
KasI GGCGCC 1 cut(s) 325
Kzo9I GATC 3 cut(s) 172, 200, 226
LmnI GCTCC 1 cut(s) 436
Lsp1109I GCAGC 2 cut(s) 440, 451
MaeI CTAG 1 cut(s) 475
MaeII ACGT 1 cut(s) 35
MaeIII GTNAC 2 cut(s) 374, 453
MalI GATC 3 cut(s) 174, 202, 228
MboI GATC 3 cut(s) 172, 200, 226
MboII GAAGA 1 cut(s) 17
MhlI GDGCHC 2 cut(s) 131, 401
MluCI AATT 1 cut(s) 181
Mly113I GGCGCC 1 cut(s) 326
MmeI TCCRAC 2 cut(s) 146, 270
MnlI CCTC 3 cut(s) 301, 327, 419
MspI CCGG 5 cut(s) 80, 194, 261, 404, 425
MspR9I CCNGG 1 cut(s) 262
MteI GCGCNGCGC 1 cut(s) 324
MvnI CGCG 5 cut(s) 125, 199, 313, 321, 323
NarI GGCGCC 1 cut(s) 326
NciI CCSGG 1 cut(s) 262
NdeII GATC 3 cut(s) 172, 200, 226
NlaIV GGNNCC 2 cut(s) 327, 399
NmuCI GTSAC 1 cut(s) 453
NruI TCGCGA 1 cut(s) 125
PalAI GGCGCGCC 1 cut(s) 311
PauI GCGCGC 1 cut(s) 311
PflFI GACNNNGTC 1 cut(s) 34
PkrI GCNGC 3 cut(s) 325, 430, 441
Ple19I CGATCG 1 cut(s) 203
PluTI GGCGCC 1 cut(s) 329
PpuMI RGGWCCY 1 cut(s) 45
Psp124BI GAGCTC 1 cut(s) 131
Psp5II RGGWCCY 1 cut(s) 45
PspEI GGTNACC 1 cut(s) 453
PspFI CCCAGC 1 cut(s) 299
PspN4I GGNNCC 2 cut(s) 327, 399
PspOMI GGGCCC 1 cut(s) 397
PspPI GGNCC 4 cut(s) 45, 397, 398, 406
PspPPI RGGWCCY 1 cut(s) 45
PsyI GACNNNGTC 1 cut(s) 34
PteI GCGCGC 1 cut(s) 311
PvuI CGATCG 1 cut(s) 203
RruI TCGCGA 1 cut(s) 125
RsaI GTAC 1 cut(s) 332
RsaNI GTAC 1 cut(s) 331
SacI GAGCTC 1 cut(s) 131
SalI GTCGAC 1 cut(s) 101
SatI GCNGC 3 cut(s) 324, 429, 440
Sau3AI GATC 3 cut(s) 172, 200, 226
Sau96I GGNCC 4 cut(s) 45, 397, 398, 406
ScrFI CCNGG 1 cut(s) 262
SduI GDGCHC 2 cut(s) 131, 401
SetI ASST 7 cut(s) 38, 47, 131, 288, 433, 444, 455
SfoI GGCGCC 1 cut(s) 327
SgsI GGCGCGCC 1 cut(s) 311
SinI GGWCC 1 cut(s) 45
Sse9I AATT 1 cut(s) 181
SsiI CCGC 4 cut(s) 176, 323, 370, 390
SspDI GGCGCC 1 cut(s) 325
SspMI CTAG 1 cut(s) 475
SstI GAGCTC 1 cut(s) 131
StyD4I CCNGG 1 cut(s) 260
TaaI ACNGT 4 cut(s) 67, 107, 335, 415
TaiI ACGT 1 cut(s) 38
TaqI TCGA 3 cut(s) 38, 102, 203
TaqII GACCGA 1 cut(s) 109
TasI AATT 1 cut(s) 181
TauI GCSGC 1 cut(s) 326
TscAI CASTG 1 cut(s) 340
TseFI GTSAC 1 cut(s) 453
TseI GCWGC 2 cut(s) 428, 439
Tsp45I GTSAC 1 cut(s) 453
TspGWI ACGGA 3 cut(s) 101, 358, 362
TspRI CASTG 1 cut(s) 340
Tth111I GACNNNGTC 1 cut(s) 34
VpaK11BI GGWCC 1 cut(s) 45
XapI RAATTY 1 cut(s) 181
XmiI GTMKAC 1 cut(s) 102
XspI CTAG 1 cut(s) 475
ZraI GACGTC 1 cut(s) 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.