FvH4_2g02491

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000118
Physical Location & Seq
Reverse (-)
1990194 .. 1990644
451 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g02491.t1

Sequence Viewer

Length: 354 bp
ATGTGCGCCTCCACCCCAGCGGACTCCAGTAGCTTCCCCGACCACTTTCCCTCCCCAGCGAGTCCGCCGAATTCTAGTTTTCAGGCCAGATCACCCAAAACTTCAAACAAAATCAATCTGGCCGGAAAACTGGAATTTGACGAACTCGCCAGGGATGGAAAGTGGTCAGAGAAACTGCTGGAGTCCGCTAGGGTGGAGGCGCGCCCTCGCCGAGAGGATATGAAGCGGACGTCTGCACTCCGGCTTAAAGTGCGGACGTCGTCTGTTCTCCGCCGTCTCACGCCGGCGACGGCTTCTTTCCTTCCCGAACGACAGCACAGGCTTCCAGGACGGTTTCTCTCCTTCCAGGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

118

Amino Acids

13.16

Weight (kDa)

10.57

Isoelectric Point (pI)

70.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000118)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01361 FvH4_1g07161 FvH4_1g07431 FvH4_1g07821 FvH4_1g08223 FvH4_1g10041 FvH4_1g12132 FvH4_1g15053 FvH4_1g18161 FvH4_1g18400 FvH4_1g18931 FvH4_1g19242 FvH4_1g19461 FvH4_1g20550 FvH4_1g21381 FvH4_1g21542 FvH4_1g22102 FvH4_1g23991 FvH4_1g24542 FvH4_1g24951 FvH4_1g24960 FvH4_1g25272 FvH4_1g25552 FvH4_1g25771 FvH4_1g28771 FvH4_1g29201 FvH4_1g29611 FvH4_2g01181 FvH4_2g02491 FvH4_2g04621 FvH4_2g04631 FvH4_2g07460 FvH4_2g08540 FvH4_2g08550 FvH4_2g09292 FvH4_2g10501 FvH4_2g12101 FvH4_2g12220 FvH4_2g12551 FvH4_2g14071 FvH4_2g14241 FvH4_2g15041 FvH4_2g15311 FvH4_2g18971 FvH4_2g19220 FvH4_2g19260 FvH4_2g19611 FvH4_2g19652 FvH4_2g20211 FvH4_2g20231 FvH4_2g21541 FvH4_2g22380 FvH4_2g27712 FvH4_2g28171 FvH4_2g29879 FvH4_2g32391 FvH4_3g02171 FvH4_3g05531 FvH4_3g09750 FvH4_3g10310 FvH4_3g10460 FvH4_3g13172 FvH4_3g15232 FvH4_3g18481 FvH4_3g18621 FvH4_3g20504 FvH4_3g20812 FvH4_3g22320 FvH4_3g22930 FvH4_3g22940 FvH4_3g23752 FvH4_3g24791 FvH4_3g26411 FvH4_3g26432 FvH4_3g27201 FvH4_3g27862 FvH4_3g28871 FvH4_3g28954 FvH4_3g29131 FvH4_3g29832 FvH4_3g29922 FvH4_3g30190 FvH4_3g32231 FvH4_3g32250 FvH4_3g33460 FvH4_3g34670 FvH4_3g36982 FvH4_3g37001 FvH4_3g38252 FvH4_3g38772 FvH4_3g40141 FvH4_3g40181 FvH4_3g42521 FvH4_4g00090 FvH4_4g00290 FvH4_4g00301 FvH4_4g00530 FvH4_4g00823 FvH4_4g02300 FvH4_4g02450 FvH4_4g03360 FvH4_4g04481 FvH4_4g04761 FvH4_4g06301 FvH4_4g06630 FvH4_4g08312 FvH4_4g08552 FvH4_4g10053 FvH4_4g11971 FvH4_4g13211 FvH4_4g13511 FvH4_4g15351 FvH4_4g16360 FvH4_4g16601 FvH4_4g18462 FvH4_4g22911 FvH4_4g23221 FvH4_4g24301 FvH4_4g24721 FvH4_4g27905 FvH4_4g28971 FvH4_4g29540 FvH4_4g30720 FvH4_4g31521 FvH4_4g33371 FvH4_4g34111 FvH4_4g35740 FvH4_5g00131 FvH4_5g02530 FvH4_5g02550 FvH4_5g02560 FvH4_5g02580 FvH4_5g03783 FvH4_5g05681 FvH4_5g05681 FvH4_5g09371 FvH4_5g09381 FvH4_5g14611 FvH4_5g15341 FvH4_5g19801 FvH4_5g20110 FvH4_5g20911 FvH4_5g22230 FvH4_5g25751 FvH4_5g26070 FvH4_5g26471 FvH4_5g27072 FvH4_5g27471 FvH4_5g27471 FvH4_5g27998 FvH4_5g28291 FvH4_5g30951 FvH4_5g31082 FvH4_5g31890 FvH4_5g32251 FvH4_5g34112 FvH4_5g37184 FvH4_5g37993 FvH4_5g38271 FvH4_6g00153 FvH4_6g00640 FvH4_6g05921 FvH4_6g08591 FvH4_6g09511 FvH4_6g10331 FvH4_6g10401 FvH4_6g14161 FvH4_6g14171 FvH4_6g18481 FvH4_6g19721 FvH4_6g19980 FvH4_6g20104 FvH4_6g20112 FvH4_6g21261 FvH4_6g21651 FvH4_6g22051 FvH4_6g23141 FvH4_6g24822 FvH4_6g25082 FvH4_6g25391 FvH4_6g25560 FvH4_6g26350 FvH4_6g27031 FvH4_6g27810 FvH4_6g27971 FvH4_6g28331 FvH4_6g29391 FvH4_6g30781 FvH4_6g32221 FvH4_6g34680 FvH4_6g36181 FvH4_6g36551 FvH4_6g37491 FvH4_6g37663 FvH4_6g39590 FvH4_6g40582 FvH4_6g43843 FvH4_6g50551 FvH4_7g00240 FvH4_7g00731 FvH4_7g01031 FvH4_7g03301 FvH4_7g08180 FvH4_7g08180 FvH4_7g10631 FvH4_7g19710 FvH4_7g23892 FvH4_7g25280 FvH4_7g25551 FvH4_7g30121 FvH4_7g31931 FvH4_7g32672 FvH4_c21g00040 FvH4_c2g00053
prunus_persica Prupe.1G448800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322451 RchiOBHm_Chr5g0015171
rosa_laevigata RLG00000003077 RLG00000018186 RLG00000030343
rosa_multiflora Rmu_co8096726.1_g000001
rosa_roxburghii Rroxscaffold_157G00438380 Rroxscaffold_1G00001730 Rroxscaffold_3G00236310
rosa_rugosa Rorug02G0236500
rosa_samantha Rh4BG247300 Rh6BG286200 Rh6CG287300 Rh7DG257500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 233, 260
AccII CGCG 1 cut(s) 202
AciI CCGC 6 cut(s) 20, 65, 186, 226, 253, 271
AcoI YGGCCR 1 cut(s) 120
AcsI RAATTY 2 cut(s) 70, 134
AcyI GRCGYC 2 cut(s) 230, 257
AgsI TTSAA 1 cut(s) 105
AjnI CCWGG 3 cut(s) 149, 325, 345
AluBI AGCT 1 cut(s) 33
AluI AGCT 1 cut(s) 33
Alw26I GTCTC 1 cut(s) 281
AoxI GGCC 2 cut(s) 84, 120
ApoI RAATTY 2 cut(s) 70, 134
AscI GGCGCGCC 1 cut(s) 200
AspLEI GCGC 3 cut(s) 8, 202, 204
AsuHPI GGTGA 1 cut(s) 84
BccI CCATC 1 cut(s) 149
BceAI ACGGC 2 cut(s) 258, 306
BciT130I CCWGG 3 cut(s) 151, 327, 347
BcoDI GTCTC 1 cut(s) 281
BfaI CTAG 3 cut(s) 75, 189, 352
Bme1390I CCNGG 3 cut(s) 151, 327, 347
BmrFI CCNGG 3 cut(s) 151, 327, 347
BpmI CTGGAG 2 cut(s) 10, 200
BsaHI GRCGYC 2 cut(s) 230, 257
BsaJI CCNNGG 1 cut(s) 150
BsaXI ACNNNNNCTCC 2 cut(s) 35, 65
Bse118I RCCGGY 1 cut(s) 283
Bse1I ACTGG 2 cut(s) 27, 135
BseBI CCWGG 3 cut(s) 151, 327, 347
BseDI CCNNGG 1 cut(s) 150
BseGI GGATG 1 cut(s) 160
BseNI ACTGG 2 cut(s) 27, 135
BsePI GCGCGC 1 cut(s) 200
BseYI CCCAGC 2 cut(s) 16, 55
BsgI GTGCAG 1 cut(s) 219
Bsh1236I CGCG 1 cut(s) 202
BshFI GGCC 2 cut(s) 86, 122
BsiSI CCGG 3 cut(s) 123, 241, 284
BsmAI GTCTC 1 cut(s) 281
BsmBI CGTCTC 1 cut(s) 281
BsnI GGCC 2 cut(s) 86, 122
Bsp143I GATC 1 cut(s) 89
BspACI CCGC 6 cut(s) 20, 65, 186, 226, 253, 271
BspANI GGCC 2 cut(s) 86, 122
BspFNI CGCG 1 cut(s) 202
BsrFI RCCGGY 1 cut(s) 283
BsrI ACTGG 2 cut(s) 27, 135
BssAI RCCGGY 1 cut(s) 283
BssECI CCNNGG 1 cut(s) 150
BssHII GCGCGC 1 cut(s) 200
BssMI GATC 1 cut(s) 89
BssNI GRCGYC 2 cut(s) 230, 257
Bst2UI CCWGG 3 cut(s) 151, 327, 347
Bst4CI ACNGT 1 cut(s) 333
BstACI GRCGYC 2 cut(s) 230, 257
BstC8I GCNNGC 2 cut(s) 202, 285
BstF5I GGATG 1 cut(s) 160
BstFNI CGCG 1 cut(s) 202
BstHHI GCGC 3 cut(s) 8, 202, 204
BstKTI GATC 1 cut(s) 92
BstMAI GTCTC 1 cut(s) 281
BstMBI GATC 1 cut(s) 89
BstMWI GCNNNNNNNGC 1 cut(s) 250
BstNI CCWGG 3 cut(s) 151, 327, 347
BstSCI CCNGG 3 cut(s) 149, 325, 345
BstUI CGCG 1 cut(s) 202
BsuRI GGCC 2 cut(s) 86, 122
BtsCI GGATG 1 cut(s) 160
Cac8I GCNNGC 2 cut(s) 202, 285
CfoI GCGC 3 cut(s) 8, 202, 204
Cfr10I RCCGGY 1 cut(s) 283
CviJI RGCY 6 cut(s) 33, 86, 122, 244, 293, 322
CviKI_1 RGCY 6 cut(s) 33, 86, 122, 244, 293, 322
DpnI GATC 1 cut(s) 91
DpnII GATC 1 cut(s) 89
EaeI YGGCCR 1 cut(s) 120
EciI GGCGGA 2 cut(s) 54, 260
EcoRI GAATTC 1 cut(s) 70
EcoRII CCWGG 3 cut(s) 149, 325, 345
Esp3I CGTCTC 1 cut(s) 281
FaiI YATR 1 cut(s) 221
FokI GGATG 1 cut(s) 167
FspBI CTAG 3 cut(s) 75, 189, 352
GlaI GCGC 3 cut(s) 7, 201, 203
GsaI CCCAGC 2 cut(s) 20, 59
GsuI CTGGAG 2 cut(s) 10, 200
HaeIII GGCC 2 cut(s) 86, 122
HapII CCGG 3 cut(s) 123, 241, 284
HhaI GCGC 3 cut(s) 8, 202, 204
Hin1I GRCGYC 2 cut(s) 230, 257
Hin6I GCGC 3 cut(s) 6, 200, 202
HinP1I GCGC 3 cut(s) 6, 200, 202
HinfI GANTC 3 cut(s) 23, 61, 182
HpaII CCGG 3 cut(s) 123, 241, 284
HphI GGTGA 1 cut(s) 84
Hpy188I TCNGA 1 cut(s) 169
Hpy188III TCNNGA 1 cut(s) 305
Hpy99I CGWCG 2 cut(s) 262, 292
HpyAV CCTTC 2 cut(s) 311, 352
HpyCH4III ACNGT 1 cut(s) 333
HpyCH4IV ACGT 2 cut(s) 230, 257
HpyCH4V TGCA 1 cut(s) 236
HpyF10VI GCNNNNNNNGC 1 cut(s) 250
HpySE526I ACGT 2 cut(s) 230, 257
Hsp92I GRCGYC 2 cut(s) 230, 257
HspAI GCGC 3 cut(s) 6, 200, 202
KroI GCCGGC 1 cut(s) 283
KroNI GCCGGC 1 cut(s) 285
Kzo9I GATC 1 cut(s) 89
MaeI CTAG 3 cut(s) 75, 189, 352
MaeII ACGT 2 cut(s) 230, 257
MalI GATC 1 cut(s) 91
MboI GATC 1 cut(s) 89
MluCI AATT 2 cut(s) 70, 134
MlyI GAGTC 3 cut(s) 17, 70, 191
MnlI CCTC 5 cut(s) 19, 61, 190, 208, 216
MreI CGCCGGCG 1 cut(s) 283
MroNI GCCGGC 1 cut(s) 283
MseI TTAA 1 cut(s) 246
MspA1I CMGCKG 1 cut(s) 20
MspI CCGG 3 cut(s) 123, 241, 284
MspR9I CCNGG 3 cut(s) 151, 327, 347
MvaI CCWGG 3 cut(s) 151, 327, 347
MvnI CGCG 1 cut(s) 202
MwoI GCNNNNNNNGC 1 cut(s) 250
NaeI GCCGGC 1 cut(s) 285
NdeII GATC 1 cut(s) 89
NgoMIV GCCGGC 1 cut(s) 283
NmeAIII GCCGAG 1 cut(s) 236
PalAI GGCGCGCC 1 cut(s) 200
PauI GCGCGC 1 cut(s) 200
PdiI GCCGGC 1 cut(s) 285
PflFI GACNNNGTC 1 cut(s) 259
PfoI TCCNGGA 2 cut(s) 325, 345
PleI GAGTC 3 cut(s) 17, 69, 190
PpsI GAGTC 3 cut(s) 17, 69, 190
Psp6I CCWGG 3 cut(s) 149, 325, 345
PspFI CCCAGC 2 cut(s) 16, 55
PspGI CCWGG 3 cut(s) 149, 325, 345
PsyI GACNNNGTC 1 cut(s) 259
PteI GCGCGC 1 cut(s) 200
SaqAI TTAA 1 cut(s) 246
Sau3AI GATC 1 cut(s) 89
SchI GAGTC 3 cut(s) 17, 70, 191
ScrFI CCNGG 3 cut(s) 151, 327, 347
SetI ASST 3 cut(s) 35, 233, 260
SgrAI CRCCGGYG 1 cut(s) 283
SgsI GGCGCGCC 1 cut(s) 200
Sse9I AATT 2 cut(s) 70, 134
SsiI CCGC 6 cut(s) 20, 65, 186, 226, 253, 271
SspMI CTAG 3 cut(s) 75, 189, 352
StyD4I CCNGG 3 cut(s) 149, 325, 345
TaaI ACNGT 1 cut(s) 333
TaiI ACGT 2 cut(s) 233, 260
TasI AATT 2 cut(s) 70, 134
Tru1I TTAA 1 cut(s) 246
Tru9I TTAA 1 cut(s) 246
TspDTI ATGAA 1 cut(s) 236
Tth111I GACNNNGTC 1 cut(s) 259
XapI RAATTY 2 cut(s) 70, 134
XspI CTAG 3 cut(s) 75, 189, 352
ZraI GACGTC 2 cut(s) 231, 258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.