FvH4_3g28954

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000118
Physical Location & Seq
Reverse (-)
22061838 .. 22062510
673 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g28954.t1

Sequence Viewer

Length: 231 bp
ATGGATGCTGATGTTGATATGGATTTTATGTTCGCTATTCTTCCAGCAGATATCAAATCATCCATAAAGCGCCATATCAGCATGAATGCCCTAAAGAAATATTCCGGATCAGAGGCGGACGTCCCTCTGTTCTCCACCGGACGGCTCCGACGACGGCGCGTCTCTACCCTAGCGGCTTCCAGCAGCATCCCCGATCATTTTCCCTCCCCGTATCTAGATAATATTGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

77

Amino Acids

8.47

Weight (kDa)

8.14

Isoelectric Point (pI)

69.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000118)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01361 FvH4_1g07161 FvH4_1g07431 FvH4_1g07821 FvH4_1g08223 FvH4_1g10041 FvH4_1g12132 FvH4_1g15053 FvH4_1g18161 FvH4_1g18400 FvH4_1g18931 FvH4_1g19242 FvH4_1g19461 FvH4_1g20550 FvH4_1g21381 FvH4_1g21542 FvH4_1g22102 FvH4_1g23991 FvH4_1g24542 FvH4_1g24951 FvH4_1g24960 FvH4_1g25272 FvH4_1g25552 FvH4_1g25771 FvH4_1g28771 FvH4_1g29201 FvH4_1g29611 FvH4_2g01181 FvH4_2g02491 FvH4_2g04621 FvH4_2g04631 FvH4_2g07460 FvH4_2g08540 FvH4_2g08550 FvH4_2g09292 FvH4_2g10501 FvH4_2g12101 FvH4_2g12220 FvH4_2g12551 FvH4_2g14071 FvH4_2g14241 FvH4_2g15041 FvH4_2g15311 FvH4_2g18971 FvH4_2g19220 FvH4_2g19260 FvH4_2g19611 FvH4_2g19652 FvH4_2g20211 FvH4_2g20231 FvH4_2g21541 FvH4_2g22380 FvH4_2g27712 FvH4_2g28171 FvH4_2g29879 FvH4_2g32391 FvH4_3g02171 FvH4_3g05531 FvH4_3g09750 FvH4_3g10310 FvH4_3g10460 FvH4_3g13172 FvH4_3g15232 FvH4_3g18481 FvH4_3g18621 FvH4_3g20504 FvH4_3g20812 FvH4_3g22320 FvH4_3g22930 FvH4_3g22940 FvH4_3g23752 FvH4_3g24791 FvH4_3g26411 FvH4_3g26432 FvH4_3g27201 FvH4_3g27862 FvH4_3g28871 FvH4_3g28954 FvH4_3g29131 FvH4_3g29832 FvH4_3g29922 FvH4_3g30190 FvH4_3g32231 FvH4_3g32250 FvH4_3g33460 FvH4_3g34670 FvH4_3g36982 FvH4_3g37001 FvH4_3g38252 FvH4_3g38772 FvH4_3g40141 FvH4_3g40181 FvH4_3g42521 FvH4_4g00090 FvH4_4g00290 FvH4_4g00301 FvH4_4g00530 FvH4_4g00823 FvH4_4g02300 FvH4_4g02450 FvH4_4g03360 FvH4_4g04481 FvH4_4g04761 FvH4_4g06301 FvH4_4g06630 FvH4_4g08312 FvH4_4g08552 FvH4_4g10053 FvH4_4g11971 FvH4_4g13211 FvH4_4g13511 FvH4_4g15351 FvH4_4g16360 FvH4_4g16601 FvH4_4g18462 FvH4_4g22911 FvH4_4g23221 FvH4_4g24301 FvH4_4g24721 FvH4_4g27905 FvH4_4g28971 FvH4_4g29540 FvH4_4g30720 FvH4_4g31521 FvH4_4g33371 FvH4_4g34111 FvH4_4g35740 FvH4_5g00131 FvH4_5g02530 FvH4_5g02550 FvH4_5g02560 FvH4_5g02580 FvH4_5g03783 FvH4_5g05681 FvH4_5g05681 FvH4_5g09371 FvH4_5g09381 FvH4_5g14611 FvH4_5g15341 FvH4_5g19801 FvH4_5g20110 FvH4_5g20911 FvH4_5g22230 FvH4_5g25751 FvH4_5g26070 FvH4_5g26471 FvH4_5g27072 FvH4_5g27471 FvH4_5g27471 FvH4_5g27998 FvH4_5g28291 FvH4_5g30951 FvH4_5g31082 FvH4_5g31890 FvH4_5g32251 FvH4_5g34112 FvH4_5g37184 FvH4_5g37993 FvH4_5g38271 FvH4_6g00153 FvH4_6g00640 FvH4_6g05921 FvH4_6g08591 FvH4_6g09511 FvH4_6g10331 FvH4_6g10401 FvH4_6g14161 FvH4_6g14171 FvH4_6g18481 FvH4_6g19721 FvH4_6g19980 FvH4_6g20104 FvH4_6g20112 FvH4_6g21261 FvH4_6g21651 FvH4_6g22051 FvH4_6g23141 FvH4_6g24822 FvH4_6g25082 FvH4_6g25391 FvH4_6g25560 FvH4_6g26350 FvH4_6g27031 FvH4_6g27810 FvH4_6g27971 FvH4_6g28331 FvH4_6g29391 FvH4_6g30781 FvH4_6g32221 FvH4_6g34680 FvH4_6g36181 FvH4_6g36551 FvH4_6g37491 FvH4_6g37663 FvH4_6g39590 FvH4_6g40582 FvH4_6g43843 FvH4_6g50551 FvH4_7g00240 FvH4_7g00731 FvH4_7g01031 FvH4_7g03301 FvH4_7g08180 FvH4_7g08180 FvH4_7g10631 FvH4_7g19710 FvH4_7g23892 FvH4_7g25280 FvH4_7g25551 FvH4_7g30121 FvH4_7g31931 FvH4_7g32672 FvH4_c21g00040 FvH4_c2g00053
prunus_persica Prupe.1G448800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322451 RchiOBHm_Chr5g0015171
rosa_laevigata RLG00000003077 RLG00000018186 RLG00000030343
rosa_multiflora Rmu_co8096726.1_g000001
rosa_roxburghii Rroxscaffold_157G00438380 Rroxscaffold_1G00001730 Rroxscaffold_3G00236310
rosa_rugosa Rorug02G0236500
rosa_samantha Rh4BG247300 Rh6BG286200 Rh6CG287300 Rh7DG257500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 123
AccII CGCG 1 cut(s) 159
AccIII TCCGGA 1 cut(s) 104
AciI CCGC 2 cut(s) 116, 173
AclWI GGATC 1 cut(s) 115
AcyI GRCGYC 1 cut(s) 120
AfiI CCNNNNNNNGG 1 cut(s) 141
AhdI GACNNNNNGTC 1 cut(s) 158
AloI GAACNNNNNNTCC 2 cut(s) 14, 46
Alw26I GTCTC 1 cut(s) 166
AlwI GGATC 1 cut(s) 115
Aor13HI TCCGGA 1 cut(s) 104
ApeKI GCWGC 1 cut(s) 183
AspLEI GCGC 2 cut(s) 72, 159
BbvI GCAGC 1 cut(s) 195
BceAI ACGGC 2 cut(s) 158, 170
BcoDI GTCTC 1 cut(s) 166
BfaI CTAG 2 cut(s) 170, 215
BfoI RGCGCY 1 cut(s) 73
BisI GCNGC 2 cut(s) 174, 184
BlsI GCNGC 2 cut(s) 175, 185
BmeRI GACNNNNNGTC 1 cut(s) 158
BmiI GGNNCC 1 cut(s) 146
BmsI GCATC 1 cut(s) 195
BsaHI GRCGYC 1 cut(s) 120
BsaWI WCCGGW 2 cut(s) 104, 137
Bsc4I CCNNNNNNNGG 1 cut(s) 141
BseAI TCCGGA 1 cut(s) 104
BseGI GGATG 3 cut(s) 10, 59, 186
BseLI CCNNNNNNNGG 1 cut(s) 141
BseXI GCAGC 1 cut(s) 195
Bsh1236I CGCG 1 cut(s) 159
BsiSI CCGG 2 cut(s) 105, 138
BslFI GGGAC 1 cut(s) 107
BslI CCNNNNNNNGG 1 cut(s) 141
BsmAI GTCTC 1 cut(s) 166
BsmBI CGTCTC 1 cut(s) 166
BsmFI GGGAC 1 cut(s) 107
BsmI GAATGC 1 cut(s) 91
Bsp13I TCCGGA 1 cut(s) 104
Bsp143I GATC 2 cut(s) 107, 193
BspACI CCGC 2 cut(s) 116, 173
BspEI TCCGGA 1 cut(s) 104
BspFNI CGCG 1 cut(s) 159
BspLI GGNNCC 1 cut(s) 146
BspPI GGATC 1 cut(s) 115
BssMI GATC 2 cut(s) 107, 193
BssNI GRCGYC 1 cut(s) 120
BstACI GRCGYC 1 cut(s) 120
BstF5I GGATG 3 cut(s) 10, 59, 186
BstFNI CGCG 1 cut(s) 159
BstH2I RGCGCY 1 cut(s) 73
BstHHI GCGC 2 cut(s) 72, 159
BstKTI GATC 2 cut(s) 110, 196
BstMAI GTCTC 1 cut(s) 166
BstMBI GATC 2 cut(s) 107, 193
BstMWI GCNNNNNNNGC 1 cut(s) 78
BstUI CGCG 1 cut(s) 159
BstV1I GCAGC 1 cut(s) 195
BtsCI GGATG 3 cut(s) 10, 59, 186
CfoI GCGC 2 cut(s) 72, 159
CseI GACGC 1 cut(s) 148
CviAII CATG 1 cut(s) 82
CviJI RGCY 2 cut(s) 145, 176
CviKI_1 RGCY 2 cut(s) 145, 176
DpnI GATC 2 cut(s) 109, 195
DpnII GATC 2 cut(s) 107, 193
DriI GACNNNNNGTC 1 cut(s) 158
Eam1105I GACNNNNNGTC 1 cut(s) 158
EciI GGCGGA 1 cut(s) 131
Eco32I GATATC 1 cut(s) 52
EcoRV GATATC 1 cut(s) 52
Esp3I CGTCTC 1 cut(s) 166
FaeI CATG 1 cut(s) 85
FaiI YATR 5 cut(s) 20, 29, 65, 75, 83
FaqI GGGAC 1 cut(s) 107
FatI CATG 1 cut(s) 81
Fnu4HI GCNGC 2 cut(s) 174, 184
FokI GGATG 3 cut(s) 17, 46, 173
Fsp4HI GCNGC 2 cut(s) 174, 184
FspBI CTAG 2 cut(s) 170, 215
GlaI GCGC 2 cut(s) 71, 158
GluI GCNGC 2 cut(s) 174, 184
HaeII RGCGCY 1 cut(s) 73
HapII CCGG 2 cut(s) 105, 138
HgaI GACGC 1 cut(s) 148
HhaI GCGC 2 cut(s) 72, 159
Hin1I GRCGYC 1 cut(s) 120
Hin1II CATG 1 cut(s) 85
Hin6I GCGC 2 cut(s) 70, 157
HinP1I GCGC 2 cut(s) 70, 157
HpaII CCGG 2 cut(s) 105, 138
Hpy188I TCNGA 2 cut(s) 112, 149
Hpy188III TCNNGA 2 cut(s) 105, 215
Hpy99I CGWCG 2 cut(s) 153, 156
HpyCH4IV ACGT 1 cut(s) 120
HpyF10VI GCNNNNNNNGC 1 cut(s) 78
HpySE526I ACGT 1 cut(s) 120
Hsp92I GRCGYC 1 cut(s) 120
Hsp92II CATG 1 cut(s) 85
HspAI GCGC 2 cut(s) 70, 157
Kpn2I TCCGGA 1 cut(s) 104
Kzo9I GATC 2 cut(s) 107, 193
LmnI GCTCC 1 cut(s) 150
LpnPI CCDG 4 cut(s) 57, 118, 151, 193
Lsp1109I GCAGC 1 cut(s) 195
LweI GCATC 1 cut(s) 195
MaeI CTAG 2 cut(s) 170, 215
MaeII ACGT 1 cut(s) 120
MalI GATC 2 cut(s) 109, 195
MboI GATC 2 cut(s) 107, 193
MboII GAAGA 1 cut(s) 32
MmeI TCCRAC 1 cut(s) 172
MnlI CCTC 3 cut(s) 106, 135, 214
MroI TCCGGA 1 cut(s) 104
MspI CCGG 2 cut(s) 105, 138
Mva1269I GAATGC 1 cut(s) 91
MvnI CGCG 1 cut(s) 159
MwoI GCNNNNNNNGC 1 cut(s) 78
NdeII GATC 2 cut(s) 107, 193
NlaIII CATG 1 cut(s) 85
NlaIV GGNNCC 1 cut(s) 146
PcsI WCGNNNNNNNCGW 1 cut(s) 148
PctI GAATGC 1 cut(s) 91
PkrI GCNGC 2 cut(s) 175, 185
PspN4I GGNNCC 1 cut(s) 146
SatI GCNGC 2 cut(s) 174, 184
Sau3AI GATC 2 cut(s) 107, 193
SetI ASST 1 cut(s) 123
SfaNI GCATC 1 cut(s) 195
SsiI CCGC 2 cut(s) 116, 173
SspI AATATT 2 cut(s) 101, 223
SspMI CTAG 2 cut(s) 170, 215
TaiI ACGT 1 cut(s) 123
TauI GCSGC 1 cut(s) 176
TseI GCWGC 1 cut(s) 183
TspDTI ATGAA 1 cut(s) 98
XbaI TCTAGA 1 cut(s) 214
XspI CTAG 2 cut(s) 170, 215
ZraI GACGTC 1 cut(s) 121
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.