FvH4_2g22380

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000118
Physical Location & Seq
Reverse (-)
18349866 .. 18350833
968 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g22380.t1

Sequence Viewer

Length: 417 bp
ATGACAATCTTTTTCATTAGTCCATTCCAATATAAGGCTCCGGTCACCGGCAGTCGGACTCCAGTCACCAGCCGCCGGACTCCGGTCACCGAGGCCGGATCAGGAGTGGACGTCCGCACCGGCCTTAAAGTGCAGACGTCCGTCCGTTCTCCACCCTCCGGCGCCGGTGCGCCTCCAACCCAGAAGACTCCAGCAGCGTCACCGACCACTTTCCCTCCCCGGCGAGTCCGTTCTTTTCCAGCTTTCCGACGAGATCACCCAAAACTTCAAACAAAGTCGATCTTGCCGGAAAACTGGAAAAAAAATGGACTCACCGAAGAGGGAAAGTGGTCGGGGACGCTACTGGAATCTTCTAGGGTGGAGGCGTGCTGTCGCCGGCGCCGGAGGGTGGAGAATGGACGGACGTCCGCACTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

139

Amino Acids

15.21

Weight (kDa)

11.53

Isoelectric Point (pI)

83.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000118)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01361 FvH4_1g07161 FvH4_1g07431 FvH4_1g07821 FvH4_1g08223 FvH4_1g10041 FvH4_1g12132 FvH4_1g15053 FvH4_1g18161 FvH4_1g18400 FvH4_1g18931 FvH4_1g19242 FvH4_1g19461 FvH4_1g20550 FvH4_1g21381 FvH4_1g21542 FvH4_1g22102 FvH4_1g23991 FvH4_1g24542 FvH4_1g24951 FvH4_1g24960 FvH4_1g25272 FvH4_1g25552 FvH4_1g25771 FvH4_1g28771 FvH4_1g29201 FvH4_1g29611 FvH4_2g01181 FvH4_2g02491 FvH4_2g04621 FvH4_2g04631 FvH4_2g07460 FvH4_2g08540 FvH4_2g08550 FvH4_2g09292 FvH4_2g10501 FvH4_2g12101 FvH4_2g12220 FvH4_2g12551 FvH4_2g14071 FvH4_2g14241 FvH4_2g15041 FvH4_2g15311 FvH4_2g18971 FvH4_2g19220 FvH4_2g19260 FvH4_2g19611 FvH4_2g19652 FvH4_2g20211 FvH4_2g20231 FvH4_2g21541 FvH4_2g22380 FvH4_2g27712 FvH4_2g28171 FvH4_2g29879 FvH4_2g32391 FvH4_3g02171 FvH4_3g05531 FvH4_3g09750 FvH4_3g10310 FvH4_3g10460 FvH4_3g13172 FvH4_3g15232 FvH4_3g18481 FvH4_3g18621 FvH4_3g20504 FvH4_3g20812 FvH4_3g22320 FvH4_3g22930 FvH4_3g22940 FvH4_3g23752 FvH4_3g24791 FvH4_3g26411 FvH4_3g26432 FvH4_3g27201 FvH4_3g27862 FvH4_3g28871 FvH4_3g28954 FvH4_3g29131 FvH4_3g29832 FvH4_3g29922 FvH4_3g30190 FvH4_3g32231 FvH4_3g32250 FvH4_3g33460 FvH4_3g34670 FvH4_3g36982 FvH4_3g37001 FvH4_3g38252 FvH4_3g38772 FvH4_3g40141 FvH4_3g40181 FvH4_3g42521 FvH4_4g00090 FvH4_4g00290 FvH4_4g00301 FvH4_4g00530 FvH4_4g00823 FvH4_4g02300 FvH4_4g02450 FvH4_4g03360 FvH4_4g04481 FvH4_4g04761 FvH4_4g06301 FvH4_4g06630 FvH4_4g08312 FvH4_4g08552 FvH4_4g10053 FvH4_4g11971 FvH4_4g13211 FvH4_4g13511 FvH4_4g15351 FvH4_4g16360 FvH4_4g16601 FvH4_4g18462 FvH4_4g22911 FvH4_4g23221 FvH4_4g24301 FvH4_4g24721 FvH4_4g27905 FvH4_4g28971 FvH4_4g29540 FvH4_4g30720 FvH4_4g31521 FvH4_4g33371 FvH4_4g34111 FvH4_4g35740 FvH4_5g00131 FvH4_5g02530 FvH4_5g02550 FvH4_5g02560 FvH4_5g02580 FvH4_5g03783 FvH4_5g05681 FvH4_5g05681 FvH4_5g09371 FvH4_5g09381 FvH4_5g14611 FvH4_5g15341 FvH4_5g19801 FvH4_5g20110 FvH4_5g20911 FvH4_5g22230 FvH4_5g25751 FvH4_5g26070 FvH4_5g26471 FvH4_5g27072 FvH4_5g27471 FvH4_5g27471 FvH4_5g27998 FvH4_5g28291 FvH4_5g30951 FvH4_5g31082 FvH4_5g31890 FvH4_5g32251 FvH4_5g34112 FvH4_5g37184 FvH4_5g37993 FvH4_5g38271 FvH4_6g00153 FvH4_6g00640 FvH4_6g05921 FvH4_6g08591 FvH4_6g09511 FvH4_6g10331 FvH4_6g10401 FvH4_6g14161 FvH4_6g14171 FvH4_6g18481 FvH4_6g19721 FvH4_6g19980 FvH4_6g20104 FvH4_6g20112 FvH4_6g21261 FvH4_6g21651 FvH4_6g22051 FvH4_6g23141 FvH4_6g24822 FvH4_6g25082 FvH4_6g25391 FvH4_6g25560 FvH4_6g26350 FvH4_6g27031 FvH4_6g27810 FvH4_6g27971 FvH4_6g28331 FvH4_6g29391 FvH4_6g30781 FvH4_6g32221 FvH4_6g34680 FvH4_6g36181 FvH4_6g36551 FvH4_6g37491 FvH4_6g37663 FvH4_6g39590 FvH4_6g40582 FvH4_6g43843 FvH4_6g50551 FvH4_7g00240 FvH4_7g00731 FvH4_7g01031 FvH4_7g03301 FvH4_7g08180 FvH4_7g08180 FvH4_7g10631 FvH4_7g19710 FvH4_7g23892 FvH4_7g25280 FvH4_7g25551 FvH4_7g30121 FvH4_7g31931 FvH4_7g32672 FvH4_c21g00040 FvH4_c2g00053
prunus_persica Prupe.1G448800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322451 RchiOBHm_Chr5g0015171
rosa_laevigata RLG00000003077 RLG00000018186 RLG00000030343
rosa_multiflora Rmu_co8096726.1_g000001
rosa_roxburghii Rroxscaffold_157G00438380 Rroxscaffold_1G00001730 Rroxscaffold_3G00236310
rosa_rugosa Rorug02G0236500
rosa_samantha Rh4BG247300 Rh6BG286200 Rh6CG287300 Rh7DG257500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 3 cut(s) 114, 140, 407
AccB1I GGYRCC 2 cut(s) 161, 378
AciI CCGC 3 cut(s) 73, 115, 408
AclWI GGATC 1 cut(s) 106
AcyI GRCGYC 5 cut(s) 111, 137, 162, 379, 404
AfiI CCNNNNNNNGG 7 cut(s) 34, 47, 54, 75, 82, 158, 388
AgsI TTSAA 1 cut(s) 269
AluBI AGCT 1 cut(s) 242
AluI AGCT 1 cut(s) 242
AlwI GGATC 1 cut(s) 106
AoxI GGCC 2 cut(s) 93, 121
ApeKI GCWGC 1 cut(s) 194
AspLEI GCGC 3 cut(s) 164, 172, 381
AsuC2I CCSGG 1 cut(s) 220
AsuHPI GGTGA 6 cut(s) 37, 58, 79, 192, 248, 304
BanI GGYRCC 2 cut(s) 161, 378
BbsI GAAGAC 1 cut(s) 191
BbvI GCAGC 1 cut(s) 206
BcnI CCSGG 1 cut(s) 220
BfaI CTAG 1 cut(s) 354
BfoI RGCGCY 2 cut(s) 165, 382
BisI GCNGC 2 cut(s) 73, 195
BlsI GCNGC 2 cut(s) 74, 196
Bme1390I CCNGG 1 cut(s) 220
BmiI GGNNCC 3 cut(s) 39, 163, 380
BmrFI CCNGG 1 cut(s) 220
BoxI GACNNNNGTC 4 cut(s) 62, 83, 140, 403
BpiI GAAGAC 1 cut(s) 191
BpmI CTGGAG 2 cut(s) 45, 174
BpuMI CCSGG 1 cut(s) 220
BsaHI GRCGYC 5 cut(s) 111, 137, 162, 379, 404
BsaJI CCNNGG 2 cut(s) 90, 218
BsaWI WCCGGW 2 cut(s) 40, 82
BsaXI ACNNNNNCTCC 4 cut(s) 96, 126, 199, 229
Bsc4I CCNNNNNNNGG 7 cut(s) 34, 47, 54, 75, 82, 158, 388
Bse118I RCCGGY 4 cut(s) 47, 119, 164, 375
Bse1I ACTGG 3 cut(s) 62, 299, 348
BseDI CCNNGG 2 cut(s) 90, 218
BseLI CCNNNNNNNGG 7 cut(s) 34, 47, 54, 75, 82, 158, 388
BseNI ACTGG 3 cut(s) 62, 299, 348
BseXI GCAGC 1 cut(s) 206
BsgI GTGCAG 1 cut(s) 152
BshFI GGCC 2 cut(s) 95, 123
BshNI GGYRCC 2 cut(s) 161, 378
BslFI GGGAC 1 cut(s) 349
BslI CCNNNNNNNGG 7 cut(s) 34, 47, 54, 75, 82, 158, 388
BsmFI GGGAC 1 cut(s) 349
BsnI GGCC 2 cut(s) 95, 123
Bsp143I GATC 3 cut(s) 98, 253, 279
BspACI CCGC 3 cut(s) 73, 115, 408
BspANI GGCC 2 cut(s) 95, 123
BspLI GGNNCC 3 cut(s) 39, 163, 380
BspPI GGATC 1 cut(s) 106
BspT107I GGYRCC 2 cut(s) 161, 378
BsrFI RCCGGY 4 cut(s) 47, 119, 164, 375
BsrI ACTGG 3 cut(s) 62, 299, 348
BssAI RCCGGY 4 cut(s) 47, 119, 164, 375
BssECI CCNNGG 2 cut(s) 90, 218
BssMI GATC 3 cut(s) 98, 253, 279
BssNI GRCGYC 5 cut(s) 111, 137, 162, 379, 404
Bst6I CTCTTC 1 cut(s) 312
BstACI GRCGYC 5 cut(s) 111, 137, 162, 379, 404
BstC8I GCNNGC 2 cut(s) 367, 377
BstEII GGTNACC 2 cut(s) 43, 85
BstH2I RGCGCY 2 cut(s) 165, 382
BstHHI GCGC 3 cut(s) 164, 172, 381
BstKTI GATC 3 cut(s) 101, 256, 282
BstMBI GATC 3 cut(s) 98, 253, 279
BstPAI GACNNNNGTC 4 cut(s) 62, 83, 140, 403
BstPI GGTNACC 2 cut(s) 43, 85
BstSCI CCNGG 1 cut(s) 218
BstV1I GCAGC 1 cut(s) 206
BstV2I GAAGAC 1 cut(s) 191
BsuRI GGCC 2 cut(s) 95, 123
Cac8I GCNNGC 2 cut(s) 367, 377
CfoI GCGC 3 cut(s) 164, 172, 381
Cfr10I RCCGGY 4 cut(s) 47, 119, 164, 375
CseI GACGC 2 cut(s) 186, 346
CviJI RGCY 5 cut(s) 38, 72, 95, 123, 242
CviKI_1 RGCY 5 cut(s) 38, 72, 95, 123, 242
DinI GGCGCC 2 cut(s) 163, 380
DpnI GATC 3 cut(s) 100, 255, 281
DpnII GATC 3 cut(s) 98, 253, 279
Eam1104I CTCTTC 1 cut(s) 312
EarI CTCTTC 1 cut(s) 312
Eco91I GGTNACC 2 cut(s) 43, 85
EcoO65I GGTNACC 2 cut(s) 43, 85
EgeI GGCGCC 2 cut(s) 163, 380
EheI GGCGCC 2 cut(s) 163, 380
FaiI YATR 1 cut(s) 33
FalI AAGNNNNNCTT 2 cut(s) 266, 298
FaqI GGGAC 1 cut(s) 349
Fnu4HI GCNGC 2 cut(s) 73, 195
Fsp4HI GCNGC 2 cut(s) 73, 195
FspBI CTAG 1 cut(s) 354
GlaI GCGC 3 cut(s) 163, 171, 380
GluI GCNGC 2 cut(s) 73, 195
GsuI CTGGAG 2 cut(s) 45, 174
HaeII RGCGCY 2 cut(s) 165, 382
HaeIII GGCC 2 cut(s) 95, 123
HgaI GACGC 2 cut(s) 186, 346
HhaI GCGC 3 cut(s) 164, 172, 381
Hin1I GRCGYC 5 cut(s) 111, 137, 162, 379, 404
Hin6I GCGC 3 cut(s) 162, 170, 379
HinP1I GCGC 3 cut(s) 162, 170, 379
HinfI GANTC 6 cut(s) 58, 79, 187, 225, 309, 347
HphI GGTGA 6 cut(s) 37, 58, 79, 192, 248, 304
Hpy166II GTNNAC 1 cut(s) 109
Hpy188I TCNGA 2 cut(s) 57, 248
Hpy188III TCNNGA 1 cut(s) 102
Hpy8I GTNNAC 1 cut(s) 109
Hpy99I CGWCG 1 cut(s) 252
HpyCH4IV ACGT 3 cut(s) 111, 137, 404
HpyCH4V TGCA 1 cut(s) 133
HpySE526I ACGT 3 cut(s) 111, 137, 404
Hsp92I GRCGYC 5 cut(s) 111, 137, 162, 379, 404
HspAI GCGC 3 cut(s) 162, 170, 379
KasI GGCGCC 2 cut(s) 161, 378
KroI GCCGGC 1 cut(s) 375
KroNI GCCGGC 1 cut(s) 377
Kzo9I GATC 3 cut(s) 98, 253, 279
LmnI GCTCC 1 cut(s) 43
Lsp1109I GCAGC 1 cut(s) 206
MaeI CTAG 1 cut(s) 354
MaeII ACGT 3 cut(s) 111, 137, 404
MaeIII GTNAC 4 cut(s) 43, 64, 85, 198
MalI GATC 3 cut(s) 100, 255, 281
MboI GATC 3 cut(s) 98, 253, 279
MboII GAAGA 3 cut(s) 196, 329, 342
Mly113I GGCGCC 2 cut(s) 162, 379
MlyI GAGTC 5 cut(s) 52, 73, 181, 234, 303
MmeI TCCRAC 3 cut(s) 35, 200, 271
MnlI CCTC 7 cut(s) 85, 166, 183, 225, 313, 355, 378
MreI CGCCGGCG 1 cut(s) 375
MroNI GCCGGC 1 cut(s) 375
MseI TTAA 2 cut(s) 126, 415
MspR9I CCNGG 1 cut(s) 220
NaeI GCCGGC 1 cut(s) 377
NarI GGCGCC 2 cut(s) 162, 379
NciI CCSGG 1 cut(s) 220
NdeII GATC 3 cut(s) 98, 253, 279
NgoMIV GCCGGC 1 cut(s) 375
NlaIV GGNNCC 3 cut(s) 39, 163, 380
NmuCI GTSAC 4 cut(s) 43, 64, 85, 198
PdiI GCCGGC 1 cut(s) 377
PfeI GAWTC 1 cut(s) 347
PkrI GCNGC 2 cut(s) 74, 196
PleI GAGTC 5 cut(s) 52, 73, 181, 233, 303
PluTI GGCGCC 2 cut(s) 165, 382
PpsI GAGTC 5 cut(s) 52, 73, 181, 233, 303
PshAI GACNNNNGTC 4 cut(s) 62, 83, 140, 403
PspEI GGTNACC 2 cut(s) 43, 85
PspN4I GGNNCC 3 cut(s) 39, 163, 380
SaqAI TTAA 2 cut(s) 126, 415
SatI GCNGC 2 cut(s) 73, 195
Sau3AI GATC 3 cut(s) 98, 253, 279
SchI GAGTC 5 cut(s) 52, 73, 181, 234, 303
ScrFI CCNGG 1 cut(s) 220
SetI ASST 4 cut(s) 114, 140, 244, 407
SfoI GGCGCC 2 cut(s) 163, 380
SgrAI CRCCGGYG 2 cut(s) 164, 375
SsiI CCGC 3 cut(s) 73, 115, 408
SspDI GGCGCC 2 cut(s) 161, 378
SspMI CTAG 1 cut(s) 354
StyD4I CCNGG 1 cut(s) 218
TaiI ACGT 3 cut(s) 114, 140, 407
TaqI TCGA 1 cut(s) 278
TauI GCSGC 1 cut(s) 75
TfiI GAWTC 1 cut(s) 347
Tru1I TTAA 2 cut(s) 126, 415
Tru9I TTAA 2 cut(s) 126, 415
TseFI GTSAC 4 cut(s) 43, 64, 85, 198
TseI GCWGC 1 cut(s) 194
Tsp45I GTSAC 4 cut(s) 43, 64, 85, 198
TspDTI ATGAA 1 cut(s) 4
TspGWI ACGGA 4 cut(s) 130, 134, 218, 415
XspI CTAG 1 cut(s) 354
ZraI GACGTC 3 cut(s) 112, 138, 405
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.