FvH4_6g25560

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000118
Physical Location & Seq
Forward (+)
19487408 .. 19497873
10466 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g25560.t1

Sequence Viewer

Length: 729 bp
ATGGATGTGAAGCGGACGTCCGCACTCCGGCTTAAAGTGCGGACGTCGTCCGTTCTCCGCCGTCTCATGCCGGCGATGGCTTCTCTCCTTCCTGGACGACAGCACAGGCTTCCAGGACGGCTTCTCTCCTTCCAGGAATGGCAGGCTTCCAGGACGGCTTCTCTCCTTCCAGGACTGGCAGGCTTCCAAGACGGCTTCTCTCCTTCCAGGACTGGCCGGCGACAAGTTTTCCGGCCAACCTTGATCAATCATGGTGTTTTCCGTCCAAAGCTTCAATCCGGCCGGAAAACTTGTCGTCGGCCGGTCTTGGAAGGAGAGAAGCCGTCCTGGAAGCCTGTGCTGTCGTTCGGGAAGGAGAGAAGCCGTCGCCGGCGTGAGACGACGGAGAACAGACGTGCGGACGCCGGATGTGAAGTGGACGTCCGCACTAGGCTTAAAGTGCGGACCTCCGTCCGTTCTCCACCCTCCGGCGCCGGCAACGGCGCGCCTCCACCTCAGAACACTCCAGCAGCGTTCCCGACCACTTTCCCTCCCCGGCGAGTCCGTTCTTTTCCAGTTTTCTGGCGAGATCACCCAAAACTTCAAACAAGATCAATCTCGCCGGAAACTGGAAAAGAACGAACTCACCAGGGAGGGAAAGTGGTCGGGGACGCTGCTGGAGTGTTCTGGGGTGAGGCGCCCCGTCACCGGCGCCGGAGGGTGGAGAACGGACGGAGGTCCGCACTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

243

Amino Acids

27.31

Weight (kDa)

12.0

Isoelectric Point (pI)

79.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000118)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01361 FvH4_1g07161 FvH4_1g07431 FvH4_1g07821 FvH4_1g08223 FvH4_1g10041 FvH4_1g12132 FvH4_1g15053 FvH4_1g18161 FvH4_1g18400 FvH4_1g18931 FvH4_1g19242 FvH4_1g19461 FvH4_1g20550 FvH4_1g21381 FvH4_1g21542 FvH4_1g22102 FvH4_1g23991 FvH4_1g24542 FvH4_1g24951 FvH4_1g24960 FvH4_1g25272 FvH4_1g25552 FvH4_1g25771 FvH4_1g28771 FvH4_1g29201 FvH4_1g29611 FvH4_2g01181 FvH4_2g02491 FvH4_2g04621 FvH4_2g04631 FvH4_2g07460 FvH4_2g08540 FvH4_2g08550 FvH4_2g09292 FvH4_2g10501 FvH4_2g12101 FvH4_2g12220 FvH4_2g12551 FvH4_2g14071 FvH4_2g14241 FvH4_2g15041 FvH4_2g15311 FvH4_2g18971 FvH4_2g19220 FvH4_2g19260 FvH4_2g19611 FvH4_2g19652 FvH4_2g20211 FvH4_2g20231 FvH4_2g21541 FvH4_2g22380 FvH4_2g27712 FvH4_2g28171 FvH4_2g29879 FvH4_2g32391 FvH4_3g02171 FvH4_3g05531 FvH4_3g09750 FvH4_3g10310 FvH4_3g10460 FvH4_3g13172 FvH4_3g15232 FvH4_3g18481 FvH4_3g18621 FvH4_3g20504 FvH4_3g20812 FvH4_3g22320 FvH4_3g22930 FvH4_3g22940 FvH4_3g23752 FvH4_3g24791 FvH4_3g26411 FvH4_3g26432 FvH4_3g27201 FvH4_3g27862 FvH4_3g28871 FvH4_3g28954 FvH4_3g29131 FvH4_3g29832 FvH4_3g29922 FvH4_3g30190 FvH4_3g32231 FvH4_3g32250 FvH4_3g33460 FvH4_3g34670 FvH4_3g36982 FvH4_3g37001 FvH4_3g38252 FvH4_3g38772 FvH4_3g40141 FvH4_3g40181 FvH4_3g42521 FvH4_4g00090 FvH4_4g00290 FvH4_4g00301 FvH4_4g00530 FvH4_4g00823 FvH4_4g02300 FvH4_4g02450 FvH4_4g03360 FvH4_4g04481 FvH4_4g04761 FvH4_4g06301 FvH4_4g06630 FvH4_4g08312 FvH4_4g08552 FvH4_4g10053 FvH4_4g11971 FvH4_4g13211 FvH4_4g13511 FvH4_4g15351 FvH4_4g16360 FvH4_4g16601 FvH4_4g18462 FvH4_4g22911 FvH4_4g23221 FvH4_4g24301 FvH4_4g24721 FvH4_4g27905 FvH4_4g28971 FvH4_4g29540 FvH4_4g30720 FvH4_4g31521 FvH4_4g33371 FvH4_4g34111 FvH4_4g35740 FvH4_5g00131 FvH4_5g02530 FvH4_5g02550 FvH4_5g02560 FvH4_5g02580 FvH4_5g03783 FvH4_5g05681 FvH4_5g05681 FvH4_5g09371 FvH4_5g09381 FvH4_5g14611 FvH4_5g15341 FvH4_5g19801 FvH4_5g20110 FvH4_5g20911 FvH4_5g22230 FvH4_5g25751 FvH4_5g26070 FvH4_5g26471 FvH4_5g27072 FvH4_5g27471 FvH4_5g27471 FvH4_5g27998 FvH4_5g28291 FvH4_5g30951 FvH4_5g31082 FvH4_5g31890 FvH4_5g32251 FvH4_5g34112 FvH4_5g37184 FvH4_5g37993 FvH4_5g38271 FvH4_6g00153 FvH4_6g00640 FvH4_6g05921 FvH4_6g08591 FvH4_6g09511 FvH4_6g10331 FvH4_6g10401 FvH4_6g14161 FvH4_6g14171 FvH4_6g18481 FvH4_6g19721 FvH4_6g19980 FvH4_6g20104 FvH4_6g20112 FvH4_6g21261 FvH4_6g21651 FvH4_6g22051 FvH4_6g23141 FvH4_6g24822 FvH4_6g25082 FvH4_6g25391 FvH4_6g25560 FvH4_6g26350 FvH4_6g27031 FvH4_6g27810 FvH4_6g27971 FvH4_6g28331 FvH4_6g29391 FvH4_6g30781 FvH4_6g32221 FvH4_6g34680 FvH4_6g36181 FvH4_6g36551 FvH4_6g37491 FvH4_6g37663 FvH4_6g39590 FvH4_6g40582 FvH4_6g43843 FvH4_6g50551 FvH4_7g00240 FvH4_7g00731 FvH4_7g01031 FvH4_7g03301 FvH4_7g08180 FvH4_7g08180 FvH4_7g10631 FvH4_7g19710 FvH4_7g23892 FvH4_7g25280 FvH4_7g25551 FvH4_7g30121 FvH4_7g31931 FvH4_7g32672 FvH4_c21g00040 FvH4_c2g00053
prunus_persica Prupe.1G448800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322451 RchiOBHm_Chr5g0015171
rosa_laevigata RLG00000003077 RLG00000018186 RLG00000030343
rosa_multiflora Rmu_co8096726.1_g000001
rosa_roxburghii Rroxscaffold_157G00438380 Rroxscaffold_1G00001730 Rroxscaffold_3G00236310
rosa_rugosa Rorug02G0236500
rosa_samantha Rh4BG247300 Rh6BG286200 Rh6CG287300 Rh7DG257500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 3 cut(s) 20, 47, 423
AccB1I GGYRCC 3 cut(s) 470, 676, 690
AccII CGCG 1 cut(s) 485
AciI CCGC 8 cut(s) 13, 21, 40, 58, 398, 424, 442, 720
AcoI YGGCCR 4 cut(s) 214, 233, 280, 299
AcyI GRCGYC 7 cut(s) 17, 44, 402, 420, 471, 677, 691
AfiI CCNNNNNNNGG 5 cut(s) 27, 467, 608, 687, 700
AgsI TTSAA 2 cut(s) 275, 584
AjiI CACGTC 1 cut(s) 395
AjnI CCWGG 8 cut(s) 91, 112, 132, 149, 169, 206, 326, 627
AluBI AGCT 1 cut(s) 271
AluI AGCT 1 cut(s) 271
Alw26I GTCTC 2 cut(s) 68, 371
AoxI GGCC 4 cut(s) 214, 233, 280, 299
ApeKI GCWGC 2 cut(s) 509, 653
AscI GGCGCGCC 1 cut(s) 483
AspLEI GCGC 5 cut(s) 473, 485, 487, 679, 693
AspS9I GGNCC 2 cut(s) 444, 717
AsuC2I CCSGG 1 cut(s) 535
AsuHPI GGTGA 4 cut(s) 563, 617, 677, 683
AvaII GGWCC 2 cut(s) 444, 717
BanI GGYRCC 3 cut(s) 470, 676, 690
BbvI GCAGC 2 cut(s) 521, 640
BccI CCATC 1 cut(s) 70
BceAI ACGGC 7 cut(s) 45, 134, 171, 208, 307, 348, 496
BciT130I CCWGG 8 cut(s) 93, 114, 134, 151, 171, 208, 328, 629
BclI TGATCA 1 cut(s) 243
BcnI CCSGG 1 cut(s) 535
BcoDI GTCTC 2 cut(s) 68, 371
BfaI CTAG 1 cut(s) 429
BfoI RGCGCY 3 cut(s) 474, 680, 694
BisI GCNGC 2 cut(s) 510, 654
BlsI GCNGC 2 cut(s) 511, 655
Bme1390I CCNGG 9 cut(s) 93, 114, 134, 151, 171, 208, 328, 535, 629
Bme18I GGWCC 2 cut(s) 444, 717
BmgBI CACGTC 1 cut(s) 395
BmgT120I GGNCC 2 cut(s) 444, 717
BmiI GGNNCC 3 cut(s) 472, 678, 692
BmrFI CCNGG 9 cut(s) 93, 114, 134, 151, 171, 208, 328, 535, 629
BoxI GACNNNNGTC 2 cut(s) 449, 715
BpmI CTGGAG 2 cut(s) 489, 678
BpuMI CCSGG 1 cut(s) 535
BsaHI GRCGYC 7 cut(s) 17, 44, 402, 420, 471, 677, 691
BsaJI CCNNGG 2 cut(s) 533, 628
BsaXI ACNNNNNCTCC 4 cut(s) 514, 544, 624, 654
Bsc4I CCNNNNNNNGG 5 cut(s) 27, 467, 608, 687, 700
Bse118I RCCGGY 6 cut(s) 70, 216, 301, 369, 473, 687
Bse1I ACTGG 4 cut(s) 180, 217, 554, 613
BseBI CCWGG 8 cut(s) 93, 114, 134, 151, 171, 208, 328, 629
BseDI CCNNGG 2 cut(s) 533, 628
BseGI GGATG 2 cut(s) 10, 413
BseLI CCNNNNNNNGG 5 cut(s) 27, 467, 608, 687, 700
BseMII CTCAG 1 cut(s) 509
BseNI ACTGG 4 cut(s) 180, 217, 554, 613
BsePI GCGCGC 1 cut(s) 483
BseX3I CGGCCG 2 cut(s) 280, 299
BseXI GCAGC 2 cut(s) 521, 640
Bsh1236I CGCG 1 cut(s) 485
Bsh1285I CGRYCG 2 cut(s) 283, 302
BshFI GGCC 4 cut(s) 216, 235, 282, 301
BshNI GGYRCC 3 cut(s) 470, 676, 690
BsiEI CGRYCG 2 cut(s) 283, 302
BslFI GGGAC 1 cut(s) 662
BslI CCNNNNNNNGG 5 cut(s) 27, 467, 608, 687, 700
BsmAI GTCTC 2 cut(s) 68, 371
BsmBI CGTCTC 2 cut(s) 68, 371
BsmFI GGGAC 1 cut(s) 662
BsnI GGCC 4 cut(s) 216, 235, 282, 301
Bsp143I GATC 3 cut(s) 243, 568, 590
BspACI CCGC 8 cut(s) 13, 21, 40, 58, 398, 424, 442, 720
BspANI GGCC 4 cut(s) 216, 235, 282, 301
BspCNI CTCAG 1 cut(s) 508
BspFNI CGCG 1 cut(s) 485
BspLI GGNNCC 3 cut(s) 472, 678, 692
BspT107I GGYRCC 3 cut(s) 470, 676, 690
BsrFI RCCGGY 6 cut(s) 70, 216, 301, 369, 473, 687
BsrI ACTGG 4 cut(s) 180, 217, 554, 613
BssAI RCCGGY 6 cut(s) 70, 216, 301, 369, 473, 687
BssECI CCNNGG 2 cut(s) 533, 628
BssHII GCGCGC 1 cut(s) 483
BssMI GATC 3 cut(s) 243, 568, 590
BssNI GRCGYC 7 cut(s) 17, 44, 402, 420, 471, 677, 691
Bst2UI CCWGG 8 cut(s) 93, 114, 134, 151, 171, 208, 328, 629
BstACI GRCGYC 7 cut(s) 17, 44, 402, 420, 471, 677, 691
BstC8I GCNNGC 7 cut(s) 72, 144, 181, 218, 371, 475, 485
BstDEI CTNAG 1 cut(s) 495
BstF5I GGATG 2 cut(s) 10, 413
BstFNI CGCG 1 cut(s) 485
BstH2I RGCGCY 3 cut(s) 474, 680, 694
BstHHI GCGC 5 cut(s) 473, 485, 487, 679, 693
BstKTI GATC 3 cut(s) 246, 571, 593
BstMAI GTCTC 2 cut(s) 68, 371
BstMBI GATC 3 cut(s) 243, 568, 590
BstMCI CGRYCG 2 cut(s) 283, 302
BstMWI GCNNNNNNNGC 2 cut(s) 37, 439
BstNI CCWGG 8 cut(s) 93, 114, 134, 151, 171, 208, 328, 629
BstPAI GACNNNNGTC 2 cut(s) 449, 715
BstSCI CCNGG 9 cut(s) 91, 112, 132, 149, 169, 206, 326, 533, 627
BstUI CGCG 1 cut(s) 485
BstV1I GCAGC 2 cut(s) 521, 640
BstXI CCANNNNNNTGG 1 cut(s) 561
BstZI CGGCCG 2 cut(s) 280, 299
BsuRI GGCC 4 cut(s) 216, 235, 282, 301
BtgZI GCGATG 1 cut(s) 89
BtrI CACGTC 1 cut(s) 395
BtsCI GGATG 2 cut(s) 10, 413
Cac8I GCNNGC 7 cut(s) 72, 144, 181, 218, 371, 475, 485
CfoI GCGC 5 cut(s) 473, 485, 487, 679, 693
Cfr10I RCCGGY 6 cut(s) 70, 216, 301, 369, 473, 687
Cfr13I GGNCC 2 cut(s) 444, 717
CseI GACGC 2 cut(s) 410, 659
CviAII CATG 2 cut(s) 67, 251
DdeI CTNAG 1 cut(s) 495
DinI GGCGCC 3 cut(s) 472, 678, 692
DpnI GATC 3 cut(s) 245, 570, 592
DpnII GATC 3 cut(s) 243, 568, 590
EaeI YGGCCR 4 cut(s) 214, 233, 280, 299
EagI CGGCCG 2 cut(s) 280, 299
EciI GGCGGA 1 cut(s) 47
EclXI CGGCCG 2 cut(s) 280, 299
Eco47I GGWCC 2 cut(s) 444, 717
Eco52I CGGCCG 2 cut(s) 280, 299
EcoRII CCWGG 8 cut(s) 91, 112, 132, 149, 169, 206, 326, 627
EgeI GGCGCC 3 cut(s) 472, 678, 692
EheI GGCGCC 3 cut(s) 472, 678, 692
Esp3I CGTCTC 2 cut(s) 68, 371
FaeI CATG 2 cut(s) 70, 254
FaiI YATR 2 cut(s) 68, 252
FaqI GGGAC 1 cut(s) 662
FatI CATG 2 cut(s) 66, 250
FbaI TGATCA 1 cut(s) 243
Fnu4HI GCNGC 2 cut(s) 510, 654
FokI GGATG 2 cut(s) 17, 420
Fsp4HI GCNGC 2 cut(s) 510, 654
FspBI CTAG 1 cut(s) 429
GlaI GCGC 5 cut(s) 472, 484, 486, 678, 692
GluI GCNGC 2 cut(s) 510, 654
GsuI CTGGAG 2 cut(s) 489, 678
HaeII RGCGCY 3 cut(s) 474, 680, 694
HaeIII GGCC 4 cut(s) 216, 235, 282, 301
HgaI GACGC 2 cut(s) 410, 659
HhaI GCGC 5 cut(s) 473, 485, 487, 679, 693
Hin1I GRCGYC 7 cut(s) 17, 44, 402, 420, 471, 677, 691
Hin1II CATG 2 cut(s) 70, 254
Hin6I GCGC 5 cut(s) 471, 483, 485, 677, 691
HinP1I GCGC 5 cut(s) 471, 483, 485, 677, 691
HindIII AAGCTT 1 cut(s) 269
HinfI GANTC 1 cut(s) 540
HphI GGTGA 4 cut(s) 563, 617, 677, 683
Hpy166II GTNNAC 1 cut(s) 418
Hpy188I TCNGA 1 cut(s) 498
Hpy188III TCNNGA 2 cut(s) 349, 517
Hpy8I GTNNAC 1 cut(s) 418
Hpy99I CGWCG 4 cut(s) 49, 300, 369, 385
HpyAV CCTTC 6 cut(s) 98, 139, 176, 213, 305, 346
HpyCH4IV ACGT 4 cut(s) 17, 44, 394, 420
HpyF10VI GCNNNNNNNGC 2 cut(s) 37, 439
HpyF3I CTNAG 1 cut(s) 495
HpySE526I ACGT 4 cut(s) 17, 44, 394, 420
Hsp92I GRCGYC 7 cut(s) 17, 44, 402, 420, 471, 677, 691
Hsp92II CATG 2 cut(s) 70, 254
HspAI GCGC 5 cut(s) 471, 483, 485, 677, 691
KasI GGCGCC 3 cut(s) 470, 676, 690
KroI GCCGGC 4 cut(s) 70, 216, 369, 473
KroNI GCCGGC 4 cut(s) 72, 218, 371, 475
Ksp22I TGATCA 1 cut(s) 243
Kzo9I GATC 3 cut(s) 243, 568, 590
Lsp1109I GCAGC 2 cut(s) 521, 640
MaeI CTAG 1 cut(s) 429
MaeII ACGT 4 cut(s) 17, 44, 394, 420
MaeIII GTNAC 1 cut(s) 683
MalI GATC 3 cut(s) 245, 570, 592
MboI GATC 3 cut(s) 243, 568, 590
Mly113I GGCGCC 3 cut(s) 471, 677, 691
MlyI GAGTC 1 cut(s) 549
MnlI CCTC 9 cut(s) 457, 475, 498, 504, 540, 626, 667, 690, 708
MreI CGCCGGCG 1 cut(s) 369
MroNI GCCGGC 4 cut(s) 70, 216, 369, 473
MseI TTAA 3 cut(s) 33, 435, 727
MspR9I CCNGG 9 cut(s) 93, 114, 134, 151, 171, 208, 328, 535, 629
MvaI CCWGG 8 cut(s) 93, 114, 134, 151, 171, 208, 328, 629
MvnI CGCG 1 cut(s) 485
MwoI GCNNNNNNNGC 2 cut(s) 37, 439
NaeI GCCGGC 4 cut(s) 72, 218, 371, 475
NarI GGCGCC 3 cut(s) 471, 677, 691
NciI CCSGG 1 cut(s) 535
NdeII GATC 3 cut(s) 243, 568, 590
NgoMIV GCCGGC 4 cut(s) 70, 216, 369, 473
NlaIII CATG 2 cut(s) 70, 254
NlaIV GGNNCC 3 cut(s) 472, 678, 692
NmuCI GTSAC 1 cut(s) 683
PalAI GGCGCGCC 1 cut(s) 483
PauI GCGCGC 1 cut(s) 483
PdiI GCCGGC 4 cut(s) 72, 218, 371, 475
PflFI GACNNNGTC 1 cut(s) 46
PfoI TCCNGGA 7 cut(s) 91, 112, 132, 149, 169, 206, 326
PkrI GCNGC 2 cut(s) 511, 655
PleI GAGTC 1 cut(s) 548
PluTI GGCGCC 3 cut(s) 474, 680, 694
PpsI GAGTC 1 cut(s) 548
PshAI GACNNNNGTC 2 cut(s) 449, 715
Psp6I CCWGG 8 cut(s) 91, 112, 132, 149, 169, 206, 326, 627
PspGI CCWGG 8 cut(s) 91, 112, 132, 149, 169, 206, 326, 627
PspN4I GGNNCC 3 cut(s) 472, 678, 692
PspPI GGNCC 2 cut(s) 444, 717
PsyI GACNNNGTC 1 cut(s) 46
PteI GCGCGC 1 cut(s) 483
SaqAI TTAA 3 cut(s) 33, 435, 727
SatI GCNGC 2 cut(s) 510, 654
Sau3AI GATC 3 cut(s) 243, 568, 590
Sau96I GGNCC 2 cut(s) 444, 717
SchI GAGTC 1 cut(s) 549
ScrFI CCNGG 9 cut(s) 93, 114, 134, 151, 171, 208, 328, 535, 629
SetI ASST 9 cut(s) 20, 47, 242, 273, 397, 423, 449, 496, 719
SfoI GGCGCC 3 cut(s) 472, 678, 692
SgrAI CRCCGGYG 2 cut(s) 369, 687
SgsI GGCGCGCC 1 cut(s) 483
SinI GGWCC 2 cut(s) 444, 717
SsiI CCGC 8 cut(s) 13, 21, 40, 58, 398, 424, 442, 720
SspDI GGCGCC 3 cut(s) 470, 676, 690
SspMI CTAG 1 cut(s) 429
StyD4I CCNGG 9 cut(s) 91, 112, 132, 149, 169, 206, 326, 533, 627
TaiI ACGT 4 cut(s) 20, 47, 397, 423
Tru1I TTAA 3 cut(s) 33, 435, 727
Tru9I TTAA 3 cut(s) 33, 435, 727
TseFI GTSAC 1 cut(s) 683
TseI GCWGC 2 cut(s) 509, 653
Tsp45I GTSAC 1 cut(s) 683
TspGWI ACGGA 8 cut(s) 40, 251, 398, 439, 443, 533, 723, 727
Tth111I GACNNNGTC 1 cut(s) 46
VpaK11BI GGWCC 2 cut(s) 444, 717
XspI CTAG 1 cut(s) 429
ZraI GACGTC 3 cut(s) 18, 45, 421
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.