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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 3 cut(s) | 549, 575, 838 |
| AccB1I | GGYRCC | 3 cut(s) | 81, 596, 809 |
| AccI | GTMKAC | 1 cut(s) | 293 |
| AccII | CGCG | 4 cut(s) | 143, 230, 605, 796 |
| AciI | CCGC | 9 cut(s) | 5, 36, 141, 158, 228, 248, 542, 568, 857 |
| AclWI | GGATC | 3 cut(s) | 46, 66, 122 |
| AcoI | YGGCCR | 1 cut(s) | 316 |
| AcsI | RAATTY | 1 cut(s) | 865 |
| AcuI | CTGAAG | 1 cut(s) | 474 |
| AcyI | GRCGYC | 5 cut(s) | 546, 572, 597, 810, 835 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 593, 678, 819 |
| AflIII | ACRYGT | 1 cut(s) | 794 |
| AgeI | ACCGGT | 1 cut(s) | 78 |
| AgsI | TTSAA | 4 cut(s) | 395, 482, 494, 700 |
| AjiI | CACGTC | 1 cut(s) | 464 |
| AluBI | AGCT | 2 cut(s) | 375, 398 |
| AluI | AGCT | 2 cut(s) | 375, 398 |
| Alw26I | GTCTC | 4 cut(s) | 44, 183, 333, 454 |
| AlwI | GGATC | 3 cut(s) | 46, 66, 122 |
| AoxI | GGCC | 2 cut(s) | 316, 849 |
| ApeKI | GCWGC | 2 cut(s) | 629, 771 |
| ApoI | RAATTY | 1 cut(s) | 865 |
| AscI | GGCGCGCC | 1 cut(s) | 603 |
| AsiGI | ACCGGT | 1 cut(s) | 78 |
| AspLEI | GCGC | 6 cut(s) | 145, 232, 599, 605, 607, 812 |
| AspS9I | GGNCC | 2 cut(s) | 155, 207 |
| AsuC2I | CCSGG | 3 cut(s) | 281, 654, 747 |
| AsuHPI | GGTGA | 4 cut(s) | 213, 227, 721, 735 |
| AvaII | GGWCC | 2 cut(s) | 155, 207 |
| BanI | GGYRCC | 3 cut(s) | 81, 596, 809 |
| BbsI | GAAGAC | 1 cut(s) | 626 |
| BbvI | GCAGC | 2 cut(s) | 641, 758 |
| BceAI | ACGGC | 1 cut(s) | 785 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 273, 307 |
| BcnI | CCSGG | 3 cut(s) | 281, 654, 747 |
| BcoDI | GTCTC | 4 cut(s) | 44, 183, 333, 454 |
| BfaI | CTAG | 1 cut(s) | 309 |
| BfoI | RGCGCY | 2 cut(s) | 600, 813 |
| BisI | GCNGC | 2 cut(s) | 630, 772 |
| BlsI | GCNGC | 2 cut(s) | 631, 773 |
| Bme1390I | CCNGG | 3 cut(s) | 281, 654, 747 |
| Bme18I | GGWCC | 2 cut(s) | 155, 207 |
| BmgBI | CACGTC | 1 cut(s) | 464 |
| BmgT120I | GGNCC | 2 cut(s) | 155, 207 |
| BmiI | GGNNCC | 4 cut(s) | 83, 359, 598, 811 |
| BmrFI | CCNGG | 3 cut(s) | 281, 654, 747 |
| BoxI | GACNNNNGTC | 1 cut(s) | 834 |
| BpiI | GAAGAC | 1 cut(s) | 626 |
| BpmI | CTGGAG | 3 cut(s) | 41, 609, 796 |
| BpuEI | CTTGAG | 1 cut(s) | 135 |
| BpuMI | CCSGG | 3 cut(s) | 281, 654, 747 |
| BsaHI | GRCGYC | 5 cut(s) | 546, 572, 597, 810, 835 |
| BsaI | GGTCTC | 1 cut(s) | 44 |
| BsaJI | CCNNGG | 3 cut(s) | 279, 652, 746 |
| BsaWI | WCCGGW | 1 cut(s) | 78 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 593, 678, 819 |
| Bse118I | RCCGGY | 4 cut(s) | 78, 318, 599, 806 |
| Bse1I | ACTGG | 3 cut(s) | 361, 731, 852 |
| BseDI | CCNNGG | 3 cut(s) | 279, 652, 746 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 593, 678, 819 |
| BseMII | CTCAG | 2 cut(s) | 228, 465 |
| BseNI | ACTGG | 3 cut(s) | 361, 731, 852 |
| BsePI | GCGCGC | 1 cut(s) | 603 |
| BseRI | GAGGAG | 1 cut(s) | 202 |
| BseXI | GCAGC | 2 cut(s) | 641, 758 |
| BsgI | GTGCAG | 1 cut(s) | 535 |
| Bsh1236I | CGCG | 4 cut(s) | 143, 230, 605, 796 |
| Bsh1285I | CGRYCG | 2 cut(s) | 323, 355 |
| BshFI | GGCC | 2 cut(s) | 318, 851 |
| BshNI | GGYRCC | 3 cut(s) | 81, 596, 809 |
| BshTI | ACCGGT | 1 cut(s) | 78 |
| BsiEI | CGRYCG | 2 cut(s) | 323, 355 |
| BslFI | GGGAC | 2 cut(s) | 619, 780 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 593, 678, 819 |
| BsmAI | GTCTC | 4 cut(s) | 44, 183, 333, 454 |
| BsmBI | CGTCTC | 1 cut(s) | 454 |
| BsmFI | GGGAC | 2 cut(s) | 619, 780 |
| BsnI | GGCC | 2 cut(s) | 318, 851 |
| Bso31I | GGTCTC | 1 cut(s) | 44 |
| Bsp143I | GATC | 6 cut(s) | 51, 71, 127, 449, 685, 711 |
| BspACI | CCGC | 9 cut(s) | 5, 36, 141, 158, 228, 248, 542, 568, 857 |
| BspANI | GGCC | 2 cut(s) | 318, 851 |
| BspCNI | CTCAG | 2 cut(s) | 227, 466 |
| BspFNI | CGCG | 4 cut(s) | 143, 230, 605, 796 |
| BspLI | GGNNCC | 4 cut(s) | 83, 359, 598, 811 |
| BspPI | GGATC | 3 cut(s) | 46, 66, 122 |
| BspT107I | GGYRCC | 3 cut(s) | 81, 596, 809 |
| BspTNI | GGTCTC | 1 cut(s) | 44 |
| BsrFI | RCCGGY | 4 cut(s) | 78, 318, 599, 806 |
| BsrI | ACTGG | 3 cut(s) | 361, 731, 852 |
| BssAI | RCCGGY | 4 cut(s) | 78, 318, 599, 806 |
| BssECI | CCNNGG | 3 cut(s) | 279, 652, 746 |
| BssHII | GCGCGC | 1 cut(s) | 603 |
| BssMI | GATC | 6 cut(s) | 51, 71, 127, 449, 685, 711 |
| BssNI | GRCGYC | 5 cut(s) | 546, 572, 597, 810, 835 |
| Bst4CI | ACNGT | 2 cut(s) | 17, 445 |
| Bst6I | CTCTTC | 1 cut(s) | 206 |
| BstACI | GRCGYC | 5 cut(s) | 546, 572, 597, 810, 835 |
| BstC8I | GCNNGC | 5 cut(s) | 377, 601, 605, 798, 808 |
| BstDEI | CTNAG | 3 cut(s) | 101, 214, 474 |
| BstFNI | CGCG | 4 cut(s) | 143, 230, 605, 796 |
| BstH2I | RGCGCY | 2 cut(s) | 600, 813 |
| BstHHI | GCGC | 6 cut(s) | 145, 232, 599, 605, 607, 812 |
| BstKTI | GATC | 6 cut(s) | 54, 74, 130, 452, 688, 714 |
| BstMAI | GTCTC | 4 cut(s) | 44, 183, 333, 454 |
| BstMBI | GATC | 6 cut(s) | 51, 71, 127, 449, 685, 711 |
| BstMCI | CGRYCG | 2 cut(s) | 323, 355 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 42, 67, 565 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 834 |
| BstSCI | CCNGG | 3 cut(s) | 279, 652, 745 |
| BstUI | CGCG | 4 cut(s) | 143, 230, 605, 796 |
| BstV1I | GCAGC | 2 cut(s) | 641, 758 |
| BstV2I | GAAGAC | 1 cut(s) | 626 |
| BstX2I | RGATCY | 2 cut(s) | 51, 127 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 346 |
| BstYI | RGATCY | 2 cut(s) | 51, 127 |
| BsuRI | GGCC | 2 cut(s) | 318, 851 |
| BtrI | CACGTC | 1 cut(s) | 464 |
| BtsIMutI | CAGTG | 1 cut(s) | 859 |
| Cac8I | GCNNGC | 5 cut(s) | 377, 601, 605, 798, 808 |
| CfoI | GCGC | 6 cut(s) | 145, 232, 599, 605, 607, 812 |
| Cfr10I | RCCGGY | 4 cut(s) | 78, 318, 599, 806 |
| Cfr13I | GGNCC | 2 cut(s) | 155, 207 |
| CseI | GACGC | 4 cut(s) | 126, 621, 777, 802 |
| CspAI | ACCGGT | 1 cut(s) | 78 |
| CviJI | RGCY | 8 cut(s) | 45, 105, 318, 360, 375, 398, 559, 851 |
| CviKI_1 | RGCY | 8 cut(s) | 45, 105, 318, 360, 375, 398, 559, 851 |
| DdeI | CTNAG | 3 cut(s) | 101, 214, 474 |
| DinI | GGCGCC | 2 cut(s) | 598, 811 |
| DpnI | GATC | 6 cut(s) | 53, 73, 129, 451, 687, 713 |
| DpnII | GATC | 6 cut(s) | 51, 71, 127, 449, 685, 711 |
| EaeI | YGGCCR | 1 cut(s) | 316 |
| Eam1104I | CTCTTC | 1 cut(s) | 206 |
| EarI | CTCTTC | 1 cut(s) | 206 |
| EciI | GGCGGA | 1 cut(s) | 20 |
| Eco31I | GGTCTC | 1 cut(s) | 44 |
| Eco47I | GGWCC | 2 cut(s) | 155, 207 |
| Eco57I | CTGAAG | 1 cut(s) | 474 |
| EgeI | GGCGCC | 2 cut(s) | 598, 811 |
| EheI | GGCGCC | 2 cut(s) | 598, 811 |
| Esp3I | CGTCTC | 1 cut(s) | 454 |
| FaiI | YATR | 5 cut(s) | 385, 434, 436, 438, 537 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 675, 707 |
| FaqI | GGGAC | 2 cut(s) | 619, 780 |
| FauI | CCCGC | 1 cut(s) | 255 |
| FblI | GTMKAC | 1 cut(s) | 293 |
| Fnu4HI | GCNGC | 2 cut(s) | 630, 772 |
| Fsp4HI | GCNGC | 2 cut(s) | 630, 772 |
| FspBI | CTAG | 1 cut(s) | 309 |
| GlaI | GCGC | 6 cut(s) | 144, 231, 598, 604, 606, 811 |
| GluI | GCNGC | 2 cut(s) | 630, 772 |
| GsuI | CTGGAG | 3 cut(s) | 41, 609, 796 |
| HaeII | RGCGCY | 2 cut(s) | 600, 813 |
| HaeIII | GGCC | 2 cut(s) | 318, 851 |
| HgaI | GACGC | 4 cut(s) | 126, 621, 777, 802 |
| HhaI | GCGC | 6 cut(s) | 145, 232, 599, 605, 607, 812 |
| Hin1I | GRCGYC | 5 cut(s) | 546, 572, 597, 810, 835 |
| Hin6I | GCGC | 6 cut(s) | 143, 230, 597, 603, 605, 810 |
| HinP1I | GCGC | 6 cut(s) | 143, 230, 597, 603, 605, 810 |
| HincII | GTYRAC | 1 cut(s) | 294 |
| HindII | GTYRAC | 1 cut(s) | 294 |
| HphI | GGTGA | 4 cut(s) | 213, 227, 721, 735 |
| Hpy166II | GTNNAC | 2 cut(s) | 294, 792 |
| Hpy188I | TCNGA | 8 cut(s) | 51, 124, 217, 333, 357, 449, 454, 475 |
| Hpy188III | TCNNGA | 4 cut(s) | 131, 166, 309, 366 |
| Hpy8I | GTNNAC | 2 cut(s) | 294, 792 |
| Hpy99I | CGWCG | 2 cut(s) | 295, 806 |
| HpyAV | CCTTC | 1 cut(s) | 745 |
| HpyCH4III | ACNGT | 2 cut(s) | 17, 445 |
| HpyCH4IV | ACGT | 4 cut(s) | 463, 546, 572, 835 |
| HpyCH4V | TGCA | 2 cut(s) | 514, 552 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 42, 67, 565 |
| HpyF3I | CTNAG | 3 cut(s) | 101, 214, 474 |
| HpySE526I | ACGT | 4 cut(s) | 463, 546, 572, 835 |
| Hsp92I | GRCGYC | 5 cut(s) | 546, 572, 597, 810, 835 |
| HspAI | GCGC | 6 cut(s) | 143, 230, 597, 603, 605, 810 |
| KasI | GGCGCC | 2 cut(s) | 596, 809 |
| KroI | GCCGGC | 2 cut(s) | 599, 806 |
| KroNI | GCCGGC | 2 cut(s) | 601, 808 |
| Kzo9I | GATC | 6 cut(s) | 51, 71, 127, 449, 685, 711 |
| LmnI | GCTCC | 1 cut(s) | 357 |
| Lsp1109I | GCAGC | 2 cut(s) | 641, 758 |
| MaeI | CTAG | 1 cut(s) | 309 |
| MaeII | ACGT | 4 cut(s) | 463, 546, 572, 835 |
| MaeIII | GTNAC | 2 cut(s) | 17, 428 |
| MalI | GATC | 6 cut(s) | 53, 73, 129, 451, 687, 713 |
| MboI | GATC | 6 cut(s) | 51, 71, 127, 449, 685, 711 |
| MboII | GAAGA | 7 cut(s) | 37, 40, 76, 137, 193, 422, 631 |
| MflI | RGATCY | 2 cut(s) | 51, 127 |
| MluCI | AATT | 2 cut(s) | 673, 865 |
| MluI | ACGCGT | 1 cut(s) | 794 |
| Mly113I | GGCGCC | 2 cut(s) | 597, 810 |
| MlyI | GAGTC | 6 cut(s) | 163, 378, 616, 668, 734, 787 |
| MmeI | TCCRAC | 2 cut(s) | 36, 335 |
| MreI | CGCCGGCG | 2 cut(s) | 599, 806 |
| MroNI | GCCGGC | 2 cut(s) | 599, 806 |
| MseI | TTAA | 3 cut(s) | 501, 561, 846 |
| MspR9I | CCNGG | 3 cut(s) | 281, 654, 747 |
| MvnI | CGCG | 4 cut(s) | 143, 230, 605, 796 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 42, 67, 565 |
| NaeI | GCCGGC | 2 cut(s) | 601, 808 |
| NarI | GGCGCC | 2 cut(s) | 597, 810 |
| NciI | CCSGG | 3 cut(s) | 281, 654, 747 |
| NdeII | GATC | 6 cut(s) | 51, 71, 127, 449, 685, 711 |
| NgoMIV | GCCGGC | 2 cut(s) | 599, 806 |
| NlaIV | GGNNCC | 4 cut(s) | 83, 359, 598, 811 |
| NmeAIII | GCCGAG | 2 cut(s) | 21, 535 |
| NmuCI | GTSAC | 1 cut(s) | 428 |
| PalAI | GGCGCGCC | 1 cut(s) | 603 |
| PauI | GCGCGC | 1 cut(s) | 603 |
| PdiI | GCCGGC | 2 cut(s) | 601, 808 |
| PfeI | GAWTC | 5 cut(s) | 8, 218, 272, 305, 478 |
| PinAI | ACCGGT | 1 cut(s) | 78 |
| PkrI | GCNGC | 2 cut(s) | 631, 773 |
| PleI | GAGTC | 6 cut(s) | 163, 377, 616, 667, 734, 786 |
| PluTI | GGCGCC | 2 cut(s) | 600, 813 |
| PpsI | GAGTC | 6 cut(s) | 163, 377, 616, 667, 734, 786 |
| PshAI | GACNNNNGTC | 1 cut(s) | 834 |
| PspN4I | GGNNCC | 4 cut(s) | 83, 359, 598, 811 |
| PspPI | GGNCC | 2 cut(s) | 155, 207 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 375, 407 |
| PsuI | RGATCY | 2 cut(s) | 51, 127 |
| PteI | GCGCGC | 1 cut(s) | 603 |
| SalI | GTCGAC | 1 cut(s) | 292 |
| SaqAI | TTAA | 3 cut(s) | 501, 561, 846 |
| SatI | GCNGC | 2 cut(s) | 630, 772 |
| Sau3AI | GATC | 6 cut(s) | 51, 71, 127, 449, 685, 711 |
| Sau96I | GGNCC | 2 cut(s) | 155, 207 |
| SchI | GAGTC | 6 cut(s) | 163, 378, 616, 668, 734, 787 |
| ScrFI | CCNGG | 3 cut(s) | 281, 654, 747 |
| SetI | ASST | 9 cut(s) | 290, 377, 400, 466, 492, 549, 575, 791, 838 |
| SfoI | GGCGCC | 2 cut(s) | 598, 811 |
| SgrAI | CRCCGGYG | 3 cut(s) | 78, 599, 806 |
| SgsI | GGCGCGCC | 1 cut(s) | 603 |
| SinI | GGWCC | 2 cut(s) | 155, 207 |
| SmlI | CTYRAG | 1 cut(s) | 150 |
| SmoI | CTYRAG | 1 cut(s) | 150 |
| Sse9I | AATT | 2 cut(s) | 673, 865 |
| SsiI | CCGC | 9 cut(s) | 5, 36, 141, 158, 228, 248, 542, 568, 857 |
| SspDI | GGCGCC | 2 cut(s) | 596, 809 |
| SspMI | CTAG | 1 cut(s) | 309 |
| StyD4I | CCNGG | 3 cut(s) | 279, 652, 745 |
| TaaI | ACNGT | 2 cut(s) | 17, 445 |
| TaiI | ACGT | 4 cut(s) | 466, 549, 575, 838 |
| TaqI | TCGA | 2 cut(s) | 293, 688 |
| TaqII | GACCGA | 1 cut(s) | 341 |
| TasI | AATT | 2 cut(s) | 673, 865 |
| TfiI | GAWTC | 5 cut(s) | 8, 218, 272, 305, 478 |
| Tru1I | TTAA | 3 cut(s) | 501, 561, 846 |
| Tru9I | TTAA | 3 cut(s) | 501, 561, 846 |
| TscAI | CASTG | 1 cut(s) | 859 |
| TseFI | GTSAC | 1 cut(s) | 428 |
| TseI | GCWGC | 2 cut(s) | 629, 771 |
| Tsp45I | GTSAC | 1 cut(s) | 428 |
| TspDTI | ATGAA | 6 cut(s) | 82, 392, 429, 453, 514, 552 |
| TspGWI | ACGGA | 4 cut(s) | 565, 652, 842, 846 |
| TspRI | CASTG | 1 cut(s) | 859 |
| VpaK11BI | GGWCC | 2 cut(s) | 155, 207 |
| XapI | RAATTY | 1 cut(s) | 865 |
| XbaI | TCTAGA | 1 cut(s) | 308 |
| XmiI | GTMKAC | 1 cut(s) | 293 |
| XspI | CTAG | 1 cut(s) | 309 |
| ZraI | GACGTC | 3 cut(s) | 547, 573, 836 |