FvH4_1g18400

Ethylene-responsive protein kinase Le-CTR1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000118
Physical Location & Seq
Reverse (-)
10709989 .. 10711380
1392 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g18400.t1

Sequence Viewer

Length: 426 bp
ATGGCTAGTCTAGGCGACTTGGTGAGCCTCGAATGCTTGAGGATCTCGTCGCCGGAGTTTGACGGCTTGTCGCTGCACAAGTTCAAGGGGCTGAAGGAGCTGGAGCTCTCCAAAGTCATGTCTCGGTGCTCGGCGGTTCCGATTTTGATCCAGGTCGCCGGGCTTAAGCTCCTGACAAAGCTATCGGAGGTCTTACTGCCCCCAGTAGGTGGTCCTACTGCCCTCGATAGACCTCTCGACAAACCTCCTACTGCCCTCAATAGACATATCCGGTCACCGGAGACAGGTCAACGGCAGTCGGAGTCCGGTCAACGGCCGCGGGAGTCTGGTCAACGGTCGTTGGATCCTGGTCAACGTCGTCGGATCTCGGTCAACAGTCGCCGGAGTCACGGTCAACGGTCATCGGTTGCGAGAATCCGGTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EDR1 LRR_8 Pkinase

Protein Analysis

142

Amino Acids

15.48

Weight (kDa)

11.02

Isoelectric Point (pI)

81.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000118)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01361 FvH4_1g07161 FvH4_1g07431 FvH4_1g07821 FvH4_1g08223 FvH4_1g10041 FvH4_1g12132 FvH4_1g15053 FvH4_1g18161 FvH4_1g18400 FvH4_1g18931 FvH4_1g19242 FvH4_1g19461 FvH4_1g20550 FvH4_1g21381 FvH4_1g21542 FvH4_1g22102 FvH4_1g23991 FvH4_1g24542 FvH4_1g24951 FvH4_1g24960 FvH4_1g25272 FvH4_1g25552 FvH4_1g25771 FvH4_1g28771 FvH4_1g29201 FvH4_1g29611 FvH4_2g01181 FvH4_2g02491 FvH4_2g04621 FvH4_2g04631 FvH4_2g07460 FvH4_2g08540 FvH4_2g08550 FvH4_2g09292 FvH4_2g10501 FvH4_2g12101 FvH4_2g12220 FvH4_2g12551 FvH4_2g14071 FvH4_2g14241 FvH4_2g15041 FvH4_2g15311 FvH4_2g18971 FvH4_2g19220 FvH4_2g19260 FvH4_2g19611 FvH4_2g19652 FvH4_2g20211 FvH4_2g20231 FvH4_2g21541 FvH4_2g22380 FvH4_2g27712 FvH4_2g28171 FvH4_2g29879 FvH4_2g32391 FvH4_3g02171 FvH4_3g05531 FvH4_3g09750 FvH4_3g10310 FvH4_3g10460 FvH4_3g13172 FvH4_3g15232 FvH4_3g18481 FvH4_3g18621 FvH4_3g20504 FvH4_3g20812 FvH4_3g22320 FvH4_3g22930 FvH4_3g22940 FvH4_3g23752 FvH4_3g24791 FvH4_3g26411 FvH4_3g26432 FvH4_3g27201 FvH4_3g27862 FvH4_3g28871 FvH4_3g28954 FvH4_3g29131 FvH4_3g29832 FvH4_3g29922 FvH4_3g30190 FvH4_3g32231 FvH4_3g32250 FvH4_3g33460 FvH4_3g34670 FvH4_3g36982 FvH4_3g37001 FvH4_3g38252 FvH4_3g38772 FvH4_3g40141 FvH4_3g40181 FvH4_3g42521 FvH4_4g00090 FvH4_4g00290 FvH4_4g00301 FvH4_4g00530 FvH4_4g00823 FvH4_4g02300 FvH4_4g02450 FvH4_4g03360 FvH4_4g04481 FvH4_4g04761 FvH4_4g06301 FvH4_4g06630 FvH4_4g08312 FvH4_4g08552 FvH4_4g10053 FvH4_4g11971 FvH4_4g13211 FvH4_4g13511 FvH4_4g15351 FvH4_4g16360 FvH4_4g16601 FvH4_4g18462 FvH4_4g22911 FvH4_4g23221 FvH4_4g24301 FvH4_4g24721 FvH4_4g27905 FvH4_4g28971 FvH4_4g29540 FvH4_4g30720 FvH4_4g31521 FvH4_4g33371 FvH4_4g34111 FvH4_4g35740 FvH4_5g00131 FvH4_5g02530 FvH4_5g02550 FvH4_5g02560 FvH4_5g02580 FvH4_5g03783 FvH4_5g05681 FvH4_5g05681 FvH4_5g09371 FvH4_5g09381 FvH4_5g14611 FvH4_5g15341 FvH4_5g19801 FvH4_5g20110 FvH4_5g20911 FvH4_5g22230 FvH4_5g25751 FvH4_5g26070 FvH4_5g26471 FvH4_5g27072 FvH4_5g27471 FvH4_5g27471 FvH4_5g27998 FvH4_5g28291 FvH4_5g30951 FvH4_5g31082 FvH4_5g31890 FvH4_5g32251 FvH4_5g34112 FvH4_5g37184 FvH4_5g37993 FvH4_5g38271 FvH4_6g00153 FvH4_6g00640 FvH4_6g05921 FvH4_6g08591 FvH4_6g09511 FvH4_6g10331 FvH4_6g10401 FvH4_6g14161 FvH4_6g14171 FvH4_6g18481 FvH4_6g19721 FvH4_6g19980 FvH4_6g20104 FvH4_6g20112 FvH4_6g21261 FvH4_6g21651 FvH4_6g22051 FvH4_6g23141 FvH4_6g24822 FvH4_6g25082 FvH4_6g25391 FvH4_6g25560 FvH4_6g26350 FvH4_6g27031 FvH4_6g27810 FvH4_6g27971 FvH4_6g28331 FvH4_6g29391 FvH4_6g30781 FvH4_6g32221 FvH4_6g34680 FvH4_6g36181 FvH4_6g36551 FvH4_6g37491 FvH4_6g37663 FvH4_6g39590 FvH4_6g40582 FvH4_6g43843 FvH4_6g50551 FvH4_7g00240 FvH4_7g00731 FvH4_7g01031 FvH4_7g03301 FvH4_7g08180 FvH4_7g08180 FvH4_7g10631 FvH4_7g19710 FvH4_7g23892 FvH4_7g25280 FvH4_7g25551 FvH4_7g30121 FvH4_7g31931 FvH4_7g32672 FvH4_c21g00040 FvH4_c2g00053
prunus_persica Prupe.1G448800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322451 RchiOBHm_Chr5g0015171
rosa_laevigata RLG00000003077 RLG00000018186 RLG00000030343
rosa_multiflora Rmu_co8096726.1_g000001
rosa_roxburghii Rroxscaffold_157G00438380 Rroxscaffold_1G00001730 Rroxscaffold_3G00236310
rosa_rugosa Rorug02G0236500
rosa_samantha Rh4BG247300 Rh6BG286200 Rh6CG287300 Rh7DG257500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 209
AccII CGCG 1 cut(s) 319
AciI CCGC 3 cut(s) 134, 317, 319
AclWI GGATC 5 cut(s) 50, 142, 338, 351, 371
AcoI YGGCCR 1 cut(s) 314
AcuI CTGAAG 1 cut(s) 113
AfiI CCNNNNNNNGG 5 cut(s) 206, 209, 277, 284, 312
AflII CTTAAG 1 cut(s) 164
AgsI TTSAA 1 cut(s) 85
AhdI GACNNNNNGTC 1 cut(s) 67
AjnI CCWGG 2 cut(s) 150, 346
AluBI AGCT 4 cut(s) 100, 106, 169, 181
AluI AGCT 4 cut(s) 100, 106, 169, 181
Alw21I GWGCWC 2 cut(s) 108, 131
Alw26I GTCTC 2 cut(s) 126, 275
AlwI GGATC 5 cut(s) 50, 142, 338, 351, 371
AoxI GGCC 1 cut(s) 314
ApeKI GCWGC 1 cut(s) 73
AspS9I GGNCC 1 cut(s) 212
AsuC2I CCSGG 1 cut(s) 160
AsuHPI GGTGA 2 cut(s) 34, 267
AvaII GGWCC 1 cut(s) 212
BamHI GGATCC 1 cut(s) 343
BanII GRGCYC 1 cut(s) 108
Bbv12I GWGCWC 2 cut(s) 108, 131
BbvI GCAGC 1 cut(s) 60
BceAI ACGGC 3 cut(s) 79, 308, 329
BciT130I CCWGG 2 cut(s) 152, 348
BcnI CCSGG 1 cut(s) 160
BcoDI GTCTC 2 cut(s) 126, 275
BfaI CTAG 2 cut(s) 6, 11
BfrI CTTAAG 1 cut(s) 164
BisI GCNGC 2 cut(s) 74, 317
BlsI GCNGC 2 cut(s) 75, 318
Bme1390I CCNGG 3 cut(s) 152, 160, 348
Bme18I GGWCC 1 cut(s) 212
BmeRI GACNNNNNGTC 1 cut(s) 67
BmgT120I GGNCC 1 cut(s) 212
BmiI GGNNCC 2 cut(s) 138, 345
BmrFI CCNGG 3 cut(s) 152, 160, 348
BmrI ACTGGG 1 cut(s) 197
BmuI ACTGGG 1 cut(s) 197
BpmI CTGGAG 1 cut(s) 122
BpuEI CTTGAG 1 cut(s) 58
BpuMI CCSGG 1 cut(s) 160
BsaBI GATNNNNATC 1 cut(s) 146
BsaJI CCNNGG 1 cut(s) 317
BsaWI WCCGGW 4 cut(s) 270, 277, 305, 417
BsaXI ACNNNNNCTCC 2 cut(s) 376, 406
Bsc4I CCNNNNNNNGG 5 cut(s) 206, 209, 277, 284, 312
Bse1I ACTGG 1 cut(s) 203
Bse8I GATNNNNATC 1 cut(s) 146
BseBI CCWGG 2 cut(s) 152, 348
BseDI CCNNGG 1 cut(s) 317
BseJI GATNNNNATC 1 cut(s) 146
BseLI CCNNNNNNNGG 5 cut(s) 206, 209, 277, 284, 312
BseNI ACTGG 1 cut(s) 203
BseX3I CGGCCG 1 cut(s) 314
BseXI GCAGC 1 cut(s) 60
BsgI GTGCAG 1 cut(s) 59
Bsh1236I CGCG 1 cut(s) 319
Bsh1285I CGRYCG 2 cut(s) 317, 338
BshFI GGCC 1 cut(s) 316
BsiEI CGRYCG 2 cut(s) 317, 338
BsiHKAI GWGCWC 2 cut(s) 108, 131
BsiSI CCGG 7 cut(s) 53, 159, 271, 278, 306, 382, 418
BslI CCNNNNNNNGG 5 cut(s) 206, 209, 277, 284, 312
BsmAI GTCTC 2 cut(s) 126, 275
BsmI GAATGC 1 cut(s) 38
BsnI GGCC 1 cut(s) 316
Bsp1286I GDGCHC 2 cut(s) 108, 131
Bsp143I GATC 4 cut(s) 42, 147, 343, 363
BspACI CCGC 3 cut(s) 134, 317, 319
BspANI GGCC 1 cut(s) 316
BspFNI CGCG 1 cut(s) 319
BspLI GGNNCC 2 cut(s) 138, 345
BspPI GGATC 5 cut(s) 50, 142, 338, 351, 371
BspTI CTTAAG 1 cut(s) 164
BsrI ACTGG 1 cut(s) 203
BssECI CCNNGG 1 cut(s) 317
BssMI GATC 4 cut(s) 42, 147, 343, 363
Bst2UI CCWGG 2 cut(s) 152, 348
Bst4CI ACNGT 4 cut(s) 336, 377, 392, 399
BstAFI CTTAAG 1 cut(s) 164
BstDSI CCRYGG 1 cut(s) 317
BstEII GGTNACC 1 cut(s) 273
BstFNI CGCG 1 cut(s) 319
BstKTI GATC 4 cut(s) 45, 150, 346, 366
BstMAI GTCTC 2 cut(s) 126, 275
BstMBI GATC 4 cut(s) 42, 147, 343, 363
BstMCI CGRYCG 2 cut(s) 317, 338
BstMWI GCNNNNNNNGC 2 cut(s) 33, 97
BstNI CCWGG 2 cut(s) 152, 348
BstPI GGTNACC 1 cut(s) 273
BstSCI CCNGG 3 cut(s) 150, 158, 346
BstUI CGCG 1 cut(s) 319
BstV1I GCAGC 1 cut(s) 60
BstX2I RGATCY 3 cut(s) 42, 343, 363
BstYI RGATCY 3 cut(s) 42, 343, 363
BstZI CGGCCG 1 cut(s) 314
BsuRI GGCC 1 cut(s) 316
BtgI CCRYGG 1 cut(s) 317
Cfr13I GGNCC 1 cut(s) 212
Cfr42I CCGCGG 1 cut(s) 320
CviAII CATG 1 cut(s) 118
DpnI GATC 4 cut(s) 44, 149, 345, 365
DpnII GATC 4 cut(s) 42, 147, 343, 363
DriI GACNNNNNGTC 1 cut(s) 67
EaeI YGGCCR 1 cut(s) 314
EagI CGGCCG 1 cut(s) 314
Eam1105I GACNNNNNGTC 1 cut(s) 67
Ecl136II GAGCTC 1 cut(s) 106
EclXI CGGCCG 1 cut(s) 314
Eco24I GRGCYC 1 cut(s) 108
Eco47I GGWCC 1 cut(s) 212
Eco52I CGGCCG 1 cut(s) 314
Eco53kI GAGCTC 1 cut(s) 106
Eco57I CTGAAG 1 cut(s) 113
Eco91I GGTNACC 1 cut(s) 273
EcoICRI GAGCTC 1 cut(s) 106
EcoO65I GGTNACC 1 cut(s) 273
EcoRII CCWGG 2 cut(s) 150, 346
EcoT38I GRGCYC 1 cut(s) 108
FaeI CATG 1 cut(s) 121
FaiI YATR 3 cut(s) 119, 267, 424
FatI CATG 1 cut(s) 117
FauI CCCGC 1 cut(s) 312
Fnu4HI GCNGC 2 cut(s) 74, 317
FriOI GRGCYC 1 cut(s) 108
Fsp4HI GCNGC 2 cut(s) 74, 317
FspBI CTAG 2 cut(s) 6, 11
GluI GCNGC 2 cut(s) 74, 317
GsuI CTGGAG 1 cut(s) 122
HaeIII GGCC 1 cut(s) 316
HapII CCGG 7 cut(s) 53, 159, 271, 278, 306, 382, 418
Hin1II CATG 1 cut(s) 121
HincII GTYRAC 6 cut(s) 290, 311, 332, 353, 373, 395
HindII GTYRAC 6 cut(s) 290, 311, 332, 353, 373, 395
HinfI GANTC 4 cut(s) 302, 323, 385, 414
HpaII CCGG 7 cut(s) 53, 159, 271, 278, 306, 382, 418
HphI GGTGA 2 cut(s) 34, 267
Hpy166II GTNNAC 6 cut(s) 290, 311, 332, 353, 373, 395
Hpy188I TCNGA 4 cut(s) 141, 187, 301, 363
Hpy188III TCNNGA 2 cut(s) 172, 236
Hpy8I GTNNAC 6 cut(s) 290, 311, 332, 353, 373, 395
Hpy99I CGWCG 3 cut(s) 52, 360, 363
HpyAV CCTTC 1 cut(s) 88
HpyCH4III ACNGT 4 cut(s) 336, 377, 392, 399
HpyCH4IV ACGT 1 cut(s) 355
HpyCH4V TGCA 1 cut(s) 76
HpyF10VI GCNNNNNNNGC 2 cut(s) 33, 97
HpySE526I ACGT 1 cut(s) 355
Hsp92II CATG 1 cut(s) 121
KspI CCGCGG 1 cut(s) 320
Kzo9I GATC 4 cut(s) 42, 147, 343, 363
LmnI GCTCC 3 cut(s) 97, 103, 174
Lsp1109I GCAGC 1 cut(s) 60
MaeI CTAG 2 cut(s) 6, 11
MaeII ACGT 1 cut(s) 355
MaeIII GTNAC 2 cut(s) 273, 386
MalI GATC 4 cut(s) 44, 149, 345, 365
MboI GATC 4 cut(s) 42, 147, 343, 363
MflI RGATCY 3 cut(s) 42, 343, 363
MhlI GDGCHC 2 cut(s) 108, 131
MlyI GAGTC 3 cut(s) 311, 332, 394
MmeI TCCRAC 3 cut(s) 279, 321, 341
MnlI CCTC 7 cut(s) 33, 38, 181, 233, 243, 255, 266
MseI TTAA 1 cut(s) 165
MspA1I CMGCKG 1 cut(s) 319
MspCI CTTAAG 1 cut(s) 164
MspI CCGG 7 cut(s) 53, 159, 271, 278, 306, 382, 418
MspR9I CCNGG 3 cut(s) 152, 160, 348
Mva1269I GAATGC 1 cut(s) 38
MvaI CCWGG 2 cut(s) 152, 348
MvnI CGCG 1 cut(s) 319
MwoI GCNNNNNNNGC 2 cut(s) 33, 97
NciI CCSGG 1 cut(s) 160
NdeII GATC 4 cut(s) 42, 147, 343, 363
NlaIII CATG 1 cut(s) 121
NlaIV GGNNCC 2 cut(s) 138, 345
NmeAIII GCCGAG 1 cut(s) 110
NmuCI GTSAC 2 cut(s) 273, 386
PcsI WCGNNNNNNNCGW 1 cut(s) 137
PctI GAATGC 1 cut(s) 38
PfeI GAWTC 1 cut(s) 414
PflMI CCANNNNNTGG 1 cut(s) 209
PkrI GCNGC 2 cut(s) 75, 318
PleI GAGTC 3 cut(s) 310, 331, 393
PpsI GAGTC 3 cut(s) 310, 331, 393
Psp124BI GAGCTC 1 cut(s) 108
Psp6I CCWGG 2 cut(s) 150, 346
PspEI GGTNACC 1 cut(s) 273
PspGI CCWGG 2 cut(s) 150, 346
PspN4I GGNNCC 2 cut(s) 138, 345
PspPI GGNCC 1 cut(s) 212
PsuI RGATCY 3 cut(s) 42, 343, 363
SacI GAGCTC 1 cut(s) 108
SacII CCGCGG 1 cut(s) 320
SaqAI TTAA 1 cut(s) 165
SatI GCNGC 2 cut(s) 74, 317
Sau3AI GATC 4 cut(s) 42, 147, 343, 363
Sau96I GGNCC 1 cut(s) 212
SchI GAGTC 3 cut(s) 311, 332, 394
ScrFI CCNGG 3 cut(s) 152, 160, 348
SduI GDGCHC 2 cut(s) 108, 131
Sfr303I CCGCGG 1 cut(s) 320
SgrBI CCGCGG 1 cut(s) 320
SinI GGWCC 1 cut(s) 212
SmlI CTYRAG 2 cut(s) 37, 164
SmoI CTYRAG 2 cut(s) 37, 164
SsiI CCGC 3 cut(s) 134, 317, 319
SspMI CTAG 2 cut(s) 6, 11
SstI GAGCTC 1 cut(s) 108
StyD4I CCNGG 3 cut(s) 150, 158, 346
TaaI ACNGT 4 cut(s) 336, 377, 392, 399
TaiI ACGT 1 cut(s) 358
TaqI TCGA 3 cut(s) 30, 225, 237
TaqII GACCGA 1 cut(s) 358
TauI GCSGC 1 cut(s) 319
TfiI GAWTC 1 cut(s) 414
Tru1I TTAA 1 cut(s) 165
Tru9I TTAA 1 cut(s) 165
TseFI GTSAC 2 cut(s) 273, 386
TseI GCWGC 1 cut(s) 73
Tsp45I GTSAC 2 cut(s) 273, 386
Van91I CCANNNNNTGG 1 cut(s) 209
Vha464I CTTAAG 1 cut(s) 164
VpaK11BI GGWCC 1 cut(s) 212
XspI CTAG 2 cut(s) 6, 11
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.