FvH4_4g00301

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000118
Physical Location & Seq
Forward (+)
310438 .. 311541
1104 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g00301.t1

Sequence Viewer

Length: 318 bp
ATGTCCGCACTCGGCTTAAAGTGCGGACGTCCATCCAAAACTGGAAAAGAACGGACTGGCCAAGAAGGAAAAGTGGTTGGGGATGCTGCTGGAGTCTTCTGGGGTGGAGGCGCGCCGTCGTCGGCGCCGGAGGGTGAAGAACAGACGGACGTCCGCACTTTAAAGCCGGATGATATTGAGATGAAGTCCTATAGTGGGAAGTCTGGGAGAACAAACCAACCACGTGTATTCCATCCCAATAAACAAGGTCAGAATGACCACCGTGATTATAGTACCCAACAAAAAACTAAGCGTCGTTATTCCAGTGCTTCACTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

106

Amino Acids

11.4

Weight (kDa)

9.67

Isoelectric Point (pI)

42.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000118)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01361 FvH4_1g07161 FvH4_1g07431 FvH4_1g07821 FvH4_1g08223 FvH4_1g10041 FvH4_1g12132 FvH4_1g15053 FvH4_1g18161 FvH4_1g18400 FvH4_1g18931 FvH4_1g19242 FvH4_1g19461 FvH4_1g20550 FvH4_1g21381 FvH4_1g21542 FvH4_1g22102 FvH4_1g23991 FvH4_1g24542 FvH4_1g24951 FvH4_1g24960 FvH4_1g25272 FvH4_1g25552 FvH4_1g25771 FvH4_1g28771 FvH4_1g29201 FvH4_1g29611 FvH4_2g01181 FvH4_2g02491 FvH4_2g04621 FvH4_2g04631 FvH4_2g07460 FvH4_2g08540 FvH4_2g08550 FvH4_2g09292 FvH4_2g10501 FvH4_2g12101 FvH4_2g12220 FvH4_2g12551 FvH4_2g14071 FvH4_2g14241 FvH4_2g15041 FvH4_2g15311 FvH4_2g18971 FvH4_2g19220 FvH4_2g19260 FvH4_2g19611 FvH4_2g19652 FvH4_2g20211 FvH4_2g20231 FvH4_2g21541 FvH4_2g22380 FvH4_2g27712 FvH4_2g28171 FvH4_2g29879 FvH4_2g32391 FvH4_3g02171 FvH4_3g05531 FvH4_3g09750 FvH4_3g10310 FvH4_3g10460 FvH4_3g13172 FvH4_3g15232 FvH4_3g18481 FvH4_3g18621 FvH4_3g20504 FvH4_3g20812 FvH4_3g22320 FvH4_3g22930 FvH4_3g22940 FvH4_3g23752 FvH4_3g24791 FvH4_3g26411 FvH4_3g26432 FvH4_3g27201 FvH4_3g27862 FvH4_3g28871 FvH4_3g28954 FvH4_3g29131 FvH4_3g29832 FvH4_3g29922 FvH4_3g30190 FvH4_3g32231 FvH4_3g32250 FvH4_3g33460 FvH4_3g34670 FvH4_3g36982 FvH4_3g37001 FvH4_3g38252 FvH4_3g38772 FvH4_3g40141 FvH4_3g40181 FvH4_3g42521 FvH4_4g00090 FvH4_4g00290 FvH4_4g00301 FvH4_4g00530 FvH4_4g00823 FvH4_4g02300 FvH4_4g02450 FvH4_4g03360 FvH4_4g04481 FvH4_4g04761 FvH4_4g06301 FvH4_4g06630 FvH4_4g08312 FvH4_4g08552 FvH4_4g10053 FvH4_4g11971 FvH4_4g13211 FvH4_4g13511 FvH4_4g15351 FvH4_4g16360 FvH4_4g16601 FvH4_4g18462 FvH4_4g22911 FvH4_4g23221 FvH4_4g24301 FvH4_4g24721 FvH4_4g27905 FvH4_4g28971 FvH4_4g29540 FvH4_4g30720 FvH4_4g31521 FvH4_4g33371 FvH4_4g34111 FvH4_4g35740 FvH4_5g00131 FvH4_5g02530 FvH4_5g02550 FvH4_5g02560 FvH4_5g02580 FvH4_5g03783 FvH4_5g05681 FvH4_5g05681 FvH4_5g09371 FvH4_5g09381 FvH4_5g14611 FvH4_5g15341 FvH4_5g19801 FvH4_5g20110 FvH4_5g20911 FvH4_5g22230 FvH4_5g25751 FvH4_5g26070 FvH4_5g26471 FvH4_5g27072 FvH4_5g27471 FvH4_5g27471 FvH4_5g27998 FvH4_5g28291 FvH4_5g30951 FvH4_5g31082 FvH4_5g31890 FvH4_5g32251 FvH4_5g34112 FvH4_5g37184 FvH4_5g37993 FvH4_5g38271 FvH4_6g00153 FvH4_6g00640 FvH4_6g05921 FvH4_6g08591 FvH4_6g09511 FvH4_6g10331 FvH4_6g10401 FvH4_6g14161 FvH4_6g14171 FvH4_6g18481 FvH4_6g19721 FvH4_6g19980 FvH4_6g20104 FvH4_6g20112 FvH4_6g21261 FvH4_6g21651 FvH4_6g22051 FvH4_6g23141 FvH4_6g24822 FvH4_6g25082 FvH4_6g25391 FvH4_6g25560 FvH4_6g26350 FvH4_6g27031 FvH4_6g27810 FvH4_6g27971 FvH4_6g28331 FvH4_6g29391 FvH4_6g30781 FvH4_6g32221 FvH4_6g34680 FvH4_6g36181 FvH4_6g36551 FvH4_6g37491 FvH4_6g37663 FvH4_6g39590 FvH4_6g40582 FvH4_6g43843 FvH4_6g50551 FvH4_7g00240 FvH4_7g00731 FvH4_7g01031 FvH4_7g03301 FvH4_7g08180 FvH4_7g08180 FvH4_7g10631 FvH4_7g19710 FvH4_7g23892 FvH4_7g25280 FvH4_7g25551 FvH4_7g30121 FvH4_7g31931 FvH4_7g32672 FvH4_c21g00040 FvH4_c2g00053
prunus_persica Prupe.1G448800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322451 RchiOBHm_Chr5g0015171
rosa_laevigata RLG00000003077 RLG00000018186 RLG00000030343
rosa_multiflora Rmu_co8096726.1_g000001
rosa_roxburghii Rroxscaffold_157G00438380 Rroxscaffold_1G00001730 Rroxscaffold_3G00236310
rosa_rugosa Rorug02G0236500
rosa_samantha Rh4BG247300 Rh6BG286200 Rh6CG287300 Rh7DG257500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 31, 153
AccB1I GGYRCC 1 cut(s) 124
AccII CGCG 1 cut(s) 113
AciI CCGC 3 cut(s) 6, 24, 154
AcoI YGGCCR 1 cut(s) 58
AcvI CACGTG 1 cut(s) 224
AcyI GRCGYC 3 cut(s) 28, 125, 150
AfaI GTAC 1 cut(s) 274
AfiI CCNNNNNNNGG 1 cut(s) 195
AflIII ACRYGT 1 cut(s) 223
AoxI GGCC 1 cut(s) 58
ApeKI GCWGC 1 cut(s) 86
AscI GGCGCGCC 1 cut(s) 111
AspLEI GCGC 3 cut(s) 113, 115, 127
AsuHPI GGTGA 1 cut(s) 146
BalI TGGCCA 1 cut(s) 60
BanI GGYRCC 1 cut(s) 124
BbrPI CACGTG 1 cut(s) 224
BbsI GAAGAC 1 cut(s) 88
BbvI GCAGC 1 cut(s) 73
BccI CCATC 2 cut(s) 40, 240
BceAI ACGGC 1 cut(s) 100
BfmI CTRYAG 1 cut(s) 190
BfoI RGCGCY 1 cut(s) 128
BisI GCNGC 1 cut(s) 87
BlsI GCNGC 1 cut(s) 88
BmiI GGNNCC 1 cut(s) 126
BmsI GCATC 1 cut(s) 73
BoxI GACNNNNGTC 1 cut(s) 149
BpiI GAAGAC 1 cut(s) 88
BpmI CTGGAG 1 cut(s) 111
BsaAI YACGTR 1 cut(s) 224
BsaHI GRCGYC 3 cut(s) 28, 125, 150
Bsc4I CCNNNNNNNGG 1 cut(s) 195
Bse1I ACTGG 3 cut(s) 46, 61, 303
BseGI GGATG 4 cut(s) 32, 88, 175, 232
BseLI CCNNNNNNNGG 1 cut(s) 195
BseNI ACTGG 3 cut(s) 46, 61, 303
BsePI GCGCGC 1 cut(s) 111
BseXI GCAGC 1 cut(s) 73
Bsh1236I CGCG 1 cut(s) 113
BshFI GGCC 1 cut(s) 60
BshNI GGYRCC 1 cut(s) 124
BsiSI CCGG 2 cut(s) 128, 167
BslI CCNNNNNNNGG 1 cut(s) 195
BsnI GGCC 1 cut(s) 60
BspACI CCGC 3 cut(s) 6, 24, 154
BspANI GGCC 1 cut(s) 60
BspFNI CGCG 1 cut(s) 113
BspLI GGNNCC 1 cut(s) 126
BspT107I GGYRCC 1 cut(s) 124
BsrI ACTGG 3 cut(s) 46, 61, 303
BssHII GCGCGC 1 cut(s) 111
BssNI GRCGYC 3 cut(s) 28, 125, 150
Bst4CI ACNGT 1 cut(s) 263
BstACI GRCGYC 3 cut(s) 28, 125, 150
BstBAI YACGTR 1 cut(s) 224
BstC8I GCNNGC 1 cut(s) 113
BstDEI CTNAG 1 cut(s) 288
BstF5I GGATG 4 cut(s) 32, 88, 175, 232
BstFNI CGCG 1 cut(s) 113
BstH2I RGCGCY 1 cut(s) 128
BstHHI GCGC 3 cut(s) 113, 115, 127
BstMWI GCNNNNNNNGC 1 cut(s) 21
BstPAI GACNNNNGTC 1 cut(s) 149
BstSFI CTRYAG 1 cut(s) 190
BstUI CGCG 1 cut(s) 113
BstV1I GCAGC 1 cut(s) 73
BstV2I GAAGAC 1 cut(s) 88
BsuRI GGCC 1 cut(s) 60
BtsCI GGATG 4 cut(s) 32, 88, 175, 232
BtsIMutI CAGTG 1 cut(s) 310
Cac8I GCNNGC 1 cut(s) 113
CfoI GCGC 3 cut(s) 113, 115, 127
CseI GACGC 1 cut(s) 281
Csp6I GTAC 1 cut(s) 273
CviJI RGCY 3 cut(s) 15, 60, 166
CviKI_1 RGCY 3 cut(s) 15, 60, 166
CviQI GTAC 1 cut(s) 273
DdeI CTNAG 1 cut(s) 288
DinI GGCGCC 1 cut(s) 126
DraI TTTAAA 1 cut(s) 162
EaeI YGGCCR 1 cut(s) 58
Eco72I CACGTG 1 cut(s) 224
EgeI GGCGCC 1 cut(s) 126
EheI GGCGCC 1 cut(s) 126
FaiI YATR 3 cut(s) 192, 270, 316
Fnu4HI GCNGC 1 cut(s) 87
FokI GGATG 4 cut(s) 19, 95, 182, 219
Fsp4HI GCNGC 1 cut(s) 87
GlaI GCGC 3 cut(s) 112, 114, 126
GluI GCNGC 1 cut(s) 87
GsuI CTGGAG 1 cut(s) 111
HaeII RGCGCY 1 cut(s) 128
HaeIII GGCC 1 cut(s) 60
HapII CCGG 2 cut(s) 128, 167
HgaI GACGC 1 cut(s) 281
HhaI GCGC 3 cut(s) 113, 115, 127
Hin1I GRCGYC 3 cut(s) 28, 125, 150
Hin6I GCGC 3 cut(s) 111, 113, 125
HinP1I GCGC 3 cut(s) 111, 113, 125
HinfI GANTC 1 cut(s) 93
HpaII CCGG 2 cut(s) 128, 167
HphI GGTGA 1 cut(s) 146
Hpy188I TCNGA 1 cut(s) 252
Hpy99I CGWCG 3 cut(s) 121, 124, 297
HpyAV CCTTC 1 cut(s) 59
HpyCH4III ACNGT 1 cut(s) 263
HpyCH4IV ACGT 3 cut(s) 28, 150, 223
HpyF10VI GCNNNNNNNGC 1 cut(s) 21
HpyF3I CTNAG 1 cut(s) 288
HpySE526I ACGT 3 cut(s) 28, 150, 223
Hsp92I GRCGYC 3 cut(s) 28, 125, 150
HspAI GCGC 3 cut(s) 111, 113, 125
KasI GGCGCC 1 cut(s) 124
LpnPI CCDG 7 cut(s) 27, 42, 75, 85, 141, 180, 189
Lsp1109I GCAGC 1 cut(s) 73
LweI GCATC 1 cut(s) 73
MaeII ACGT 3 cut(s) 28, 150, 223
MboII GAAGA 2 cut(s) 88, 149
MlsI TGGCCA 1 cut(s) 60
MluNI TGGCCA 1 cut(s) 60
Mly113I GGCGCC 1 cut(s) 125
MlyI GAGTC 1 cut(s) 102
MnlI CCTC 2 cut(s) 101, 124
Mox20I TGGCCA 1 cut(s) 60
MscI TGGCCA 1 cut(s) 60
MseI TTAA 2 cut(s) 17, 161
Msp20I TGGCCA 1 cut(s) 60
MspI CCGG 2 cut(s) 128, 167
MvnI CGCG 1 cut(s) 113
MwoI GCNNNNNNNGC 1 cut(s) 21
NarI GGCGCC 1 cut(s) 125
NlaIV GGNNCC 1 cut(s) 126
PalAI GGCGCGCC 1 cut(s) 111
PauI GCGCGC 1 cut(s) 111
PkrI GCNGC 1 cut(s) 88
PleI GAGTC 1 cut(s) 101
PluTI GGCGCC 1 cut(s) 128
PmaCI CACGTG 1 cut(s) 224
PmlI CACGTG 1 cut(s) 224
PpsI GAGTC 1 cut(s) 101
Ppu21I YACGTR 1 cut(s) 224
PshAI GACNNNNGTC 1 cut(s) 149
PspCI CACGTG 1 cut(s) 224
PspN4I GGNNCC 1 cut(s) 126
PteI GCGCGC 1 cut(s) 111
RsaI GTAC 1 cut(s) 274
RsaNI GTAC 1 cut(s) 273
SaqAI TTAA 2 cut(s) 17, 161
SatI GCNGC 1 cut(s) 87
SchI GAGTC 1 cut(s) 102
SetI ASST 4 cut(s) 31, 153, 226, 250
SfaNI GCATC 1 cut(s) 73
SfcI CTRYAG 1 cut(s) 190
SfoI GGCGCC 1 cut(s) 126
SgsI GGCGCGCC 1 cut(s) 111
SsiI CCGC 3 cut(s) 6, 24, 154
SspDI GGCGCC 1 cut(s) 124
TaaI ACNGT 1 cut(s) 263
TaiI ACGT 3 cut(s) 31, 153, 226
Tru1I TTAA 2 cut(s) 17, 161
Tru9I TTAA 2 cut(s) 17, 161
TscAI CASTG 1 cut(s) 310
TseI GCWGC 1 cut(s) 86
TspDTI ATGAA 1 cut(s) 197
TspGWI ACGGA 2 cut(s) 67, 161
TspRI CASTG 1 cut(s) 310
ZraI GACGTC 2 cut(s) 29, 151
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.