FvH4_4g03360

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000118
Physical Location & Seq
Forward (+)
3033224 .. 3034699
1476 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g03360.t1

Sequence Viewer

Length: 558 bp
ATGTGGTGGGCTCGACGGCGGGGAGGTGATGCAGCTGCTAAAGTGGGCCAGAGTTGGTTGGCCGGTGGACCTTTGTCTTGCTTTCGACCTCATGGCTTTGATTTGGGCTACAGGCCTAATTTTGTGATTTTGGATACTGGTGGGTTATGTCCTGGAAAGCGCACGCTGCGTACCATGTTTGTCTTCATGAGGCGGCGAGTTTCTTGCTTTGTCAATTGGTCACTGCCTCCTAGTGGCAAGATGAAATTTGGGGTCACTGATTATTCCCATGCGGACGTCCCTCCTTTCGCCACTGTACGGCACCGGCGAGGGCGCGCCTCCACCCCAACGGACTCCAGCAACTTCCCCGACCACTTTCCATCCCCGGCGAGTGCGTCGAATTTCTTTTCGGCTAGATTGACTTTGTTTGAAGTTTTGGTTGATCTGGCCGGAAAACTGGAATTCGGCGGACTCGCCGGGGAGGGAAAGTGGTTGGGGAAGCTGCTGGAGTTTGCTGGGGTGGAGACGCGCCCTCGCCGGCGCCGTACGGTGGCGAACGGAGGGAAATCCGCACCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

186

Amino Acids

20.38

Weight (kDa)

11.02

Isoelectric Point (pI)

55.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000118)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01361 FvH4_1g07161 FvH4_1g07431 FvH4_1g07821 FvH4_1g08223 FvH4_1g10041 FvH4_1g12132 FvH4_1g15053 FvH4_1g18161 FvH4_1g18400 FvH4_1g18931 FvH4_1g19242 FvH4_1g19461 FvH4_1g20550 FvH4_1g21381 FvH4_1g21542 FvH4_1g22102 FvH4_1g23991 FvH4_1g24542 FvH4_1g24951 FvH4_1g24960 FvH4_1g25272 FvH4_1g25552 FvH4_1g25771 FvH4_1g28771 FvH4_1g29201 FvH4_1g29611 FvH4_2g01181 FvH4_2g02491 FvH4_2g04621 FvH4_2g04631 FvH4_2g07460 FvH4_2g08540 FvH4_2g08550 FvH4_2g09292 FvH4_2g10501 FvH4_2g12101 FvH4_2g12220 FvH4_2g12551 FvH4_2g14071 FvH4_2g14241 FvH4_2g15041 FvH4_2g15311 FvH4_2g18971 FvH4_2g19220 FvH4_2g19260 FvH4_2g19611 FvH4_2g19652 FvH4_2g20211 FvH4_2g20231 FvH4_2g21541 FvH4_2g22380 FvH4_2g27712 FvH4_2g28171 FvH4_2g29879 FvH4_2g32391 FvH4_3g02171 FvH4_3g05531 FvH4_3g09750 FvH4_3g10310 FvH4_3g10460 FvH4_3g13172 FvH4_3g15232 FvH4_3g18481 FvH4_3g18621 FvH4_3g20504 FvH4_3g20812 FvH4_3g22320 FvH4_3g22930 FvH4_3g22940 FvH4_3g23752 FvH4_3g24791 FvH4_3g26411 FvH4_3g26432 FvH4_3g27201 FvH4_3g27862 FvH4_3g28871 FvH4_3g28954 FvH4_3g29131 FvH4_3g29832 FvH4_3g29922 FvH4_3g30190 FvH4_3g32231 FvH4_3g32250 FvH4_3g33460 FvH4_3g34670 FvH4_3g36982 FvH4_3g37001 FvH4_3g38252 FvH4_3g38772 FvH4_3g40141 FvH4_3g40181 FvH4_3g42521 FvH4_4g00090 FvH4_4g00290 FvH4_4g00301 FvH4_4g00530 FvH4_4g00823 FvH4_4g02300 FvH4_4g02450 FvH4_4g03360 FvH4_4g04481 FvH4_4g04761 FvH4_4g06301 FvH4_4g06630 FvH4_4g08312 FvH4_4g08552 FvH4_4g10053 FvH4_4g11971 FvH4_4g13211 FvH4_4g13511 FvH4_4g15351 FvH4_4g16360 FvH4_4g16601 FvH4_4g18462 FvH4_4g22911 FvH4_4g23221 FvH4_4g24301 FvH4_4g24721 FvH4_4g27905 FvH4_4g28971 FvH4_4g29540 FvH4_4g30720 FvH4_4g31521 FvH4_4g33371 FvH4_4g34111 FvH4_4g35740 FvH4_5g00131 FvH4_5g02530 FvH4_5g02550 FvH4_5g02560 FvH4_5g02580 FvH4_5g03783 FvH4_5g05681 FvH4_5g05681 FvH4_5g09371 FvH4_5g09381 FvH4_5g14611 FvH4_5g15341 FvH4_5g19801 FvH4_5g20110 FvH4_5g20911 FvH4_5g22230 FvH4_5g25751 FvH4_5g26070 FvH4_5g26471 FvH4_5g27072 FvH4_5g27471 FvH4_5g27471 FvH4_5g27998 FvH4_5g28291 FvH4_5g30951 FvH4_5g31082 FvH4_5g31890 FvH4_5g32251 FvH4_5g34112 FvH4_5g37184 FvH4_5g37993 FvH4_5g38271 FvH4_6g00153 FvH4_6g00640 FvH4_6g05921 FvH4_6g08591 FvH4_6g09511 FvH4_6g10331 FvH4_6g10401 FvH4_6g14161 FvH4_6g14171 FvH4_6g18481 FvH4_6g19721 FvH4_6g19980 FvH4_6g20104 FvH4_6g20112 FvH4_6g21261 FvH4_6g21651 FvH4_6g22051 FvH4_6g23141 FvH4_6g24822 FvH4_6g25082 FvH4_6g25391 FvH4_6g25560 FvH4_6g26350 FvH4_6g27031 FvH4_6g27810 FvH4_6g27971 FvH4_6g28331 FvH4_6g29391 FvH4_6g30781 FvH4_6g32221 FvH4_6g34680 FvH4_6g36181 FvH4_6g36551 FvH4_6g37491 FvH4_6g37663 FvH4_6g39590 FvH4_6g40582 FvH4_6g43843 FvH4_6g50551 FvH4_7g00240 FvH4_7g00731 FvH4_7g01031 FvH4_7g03301 FvH4_7g08180 FvH4_7g08180 FvH4_7g10631 FvH4_7g19710 FvH4_7g23892 FvH4_7g25280 FvH4_7g25551 FvH4_7g30121 FvH4_7g31931 FvH4_7g32672 FvH4_c21g00040 FvH4_c2g00053
prunus_persica Prupe.1G448800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322451 RchiOBHm_Chr5g0015171
rosa_laevigata RLG00000003077 RLG00000018186 RLG00000030343
rosa_multiflora Rmu_co8096726.1_g000001
rosa_roxburghii Rroxscaffold_157G00438380 Rroxscaffold_1G00001730 Rroxscaffold_3G00236310
rosa_rugosa Rorug02G0236500
rosa_samantha Rh4BG247300 Rh6BG286200 Rh6CG287300 Rh7DG257500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 279
AccB1I GGYRCC 2 cut(s) 300, 519
AccII CGCG 2 cut(s) 315, 508
AciI CCGC 5 cut(s) 19, 193, 272, 447, 549
AcoI YGGCCR 2 cut(s) 60, 426
AcsI RAATTY 3 cut(s) 245, 379, 440
AcyI GRCGYC 2 cut(s) 276, 520
AfaI GTAC 3 cut(s) 172, 297, 526
AfiI CCNNNNNNNGG 3 cut(s) 233, 297, 529
AgsI TTSAA 1 cut(s) 410
AjnI CCWGG 1 cut(s) 151
AluBI AGCT 2 cut(s) 35, 481
AluI AGCT 2 cut(s) 35, 481
Alw26I GTCTC 1 cut(s) 497
AoxI GGCC 4 cut(s) 46, 60, 113, 426
ApeKI GCWGC 4 cut(s) 32, 35, 166, 481
ApoI RAATTY 3 cut(s) 245, 379, 440
AscI GGCGCGCC 1 cut(s) 313
AspLEI GCGC 5 cut(s) 162, 315, 317, 510, 522
AspS9I GGNCC 2 cut(s) 46, 68
AsuC2I CCSGG 2 cut(s) 365, 457
AsuHPI GGTGA 1 cut(s) 38
AvaII GGWCC 1 cut(s) 68
BanI GGYRCC 2 cut(s) 300, 519
BanII GRGCYC 1 cut(s) 13
BbsI GAAGAC 1 cut(s) 175
BbvI GCAGC 4 cut(s) 22, 44, 153, 468
BccI CCATC 1 cut(s) 367
BceAI ACGGC 3 cut(s) 32, 314, 507
BcgI CGANNNNNNTGC 2 cut(s) 186, 220
BciT130I CCWGG 1 cut(s) 153
BciVI GTATCC 1 cut(s) 127
BcnI CCSGG 2 cut(s) 365, 457
BcoDI GTCTC 1 cut(s) 497
BfaI CTAG 2 cut(s) 231, 393
BfmI CTRYAG 1 cut(s) 109
BfoI RGCGCY 1 cut(s) 523
BfuI GTATCC 1 cut(s) 127
BisI GCNGC 5 cut(s) 33, 36, 167, 194, 482
BlsI GCNGC 5 cut(s) 34, 37, 168, 195, 483
Bme1390I CCNGG 3 cut(s) 153, 365, 457
Bme18I GGWCC 1 cut(s) 68
BmgT120I GGNCC 2 cut(s) 46, 68
BmiI GGNNCC 2 cut(s) 302, 521
BmrFI CCNGG 3 cut(s) 153, 365, 457
BmsI GCATC 1 cut(s) 19
BoxI GACNNNNGTC 1 cut(s) 73
BpiI GAAGAC 1 cut(s) 175
BpmI CTGGAG 2 cut(s) 319, 506
BpuMI CCSGG 2 cut(s) 365, 457
BsaHI GRCGYC 2 cut(s) 276, 520
BsaJI CCNNGG 2 cut(s) 363, 456
BsaXI ACNNNNNCTCC 2 cut(s) 452, 482
Bsc4I CCNNNNNNNGG 3 cut(s) 233, 297, 529
Bse118I RCCGGY 3 cut(s) 62, 303, 516
Bse1I ACTGG 2 cut(s) 142, 441
BseBI CCWGG 1 cut(s) 153
BseDI CCNNGG 2 cut(s) 363, 456
BseGI GGATG 1 cut(s) 359
BseLI CCNNNNNNNGG 3 cut(s) 233, 297, 529
BseNI ACTGG 2 cut(s) 142, 441
BsePI GCGCGC 1 cut(s) 313
BseXI GCAGC 4 cut(s) 22, 44, 153, 468
BseYI CCCAGC 1 cut(s) 494
Bsh1236I CGCG 2 cut(s) 315, 508
BshFI GGCC 4 cut(s) 48, 62, 115, 428
BshNI GGYRCC 2 cut(s) 300, 519
BsiSI CCGG 6 cut(s) 63, 304, 365, 429, 456, 517
BsiWI CGTACG 1 cut(s) 524
BslFI GGGAC 1 cut(s) 263
BslI CCNNNNNNNGG 3 cut(s) 233, 297, 529
BsmAI GTCTC 1 cut(s) 497
BsmBI CGTCTC 1 cut(s) 497
BsmFI GGGAC 1 cut(s) 263
BsnI GGCC 4 cut(s) 48, 62, 115, 428
Bsp1286I GDGCHC 1 cut(s) 13
Bsp143I GATC 1 cut(s) 421
BspACI CCGC 5 cut(s) 19, 193, 272, 447, 549
BspANI GGCC 4 cut(s) 48, 62, 115, 428
BspFNI CGCG 2 cut(s) 315, 508
BspHI TCATGA 1 cut(s) 186
BspLI GGNNCC 2 cut(s) 302, 521
BspT107I GGYRCC 2 cut(s) 300, 519
BsrFI RCCGGY 3 cut(s) 62, 303, 516
BsrI ACTGG 2 cut(s) 142, 441
BssAI RCCGGY 3 cut(s) 62, 303, 516
BssECI CCNNGG 2 cut(s) 363, 456
BssHII GCGCGC 1 cut(s) 313
BssMI GATC 1 cut(s) 421
BssNI GRCGYC 2 cut(s) 276, 520
Bst2UI CCWGG 1 cut(s) 153
Bst4CI ACNGT 2 cut(s) 295, 529
BstACI GRCGYC 2 cut(s) 276, 520
BstC8I GCNNGC 3 cut(s) 164, 315, 518
BstF5I GGATG 1 cut(s) 359
BstFNI CGCG 2 cut(s) 315, 508
BstH2I RGCGCY 1 cut(s) 523
BstHHI GCGC 5 cut(s) 162, 315, 317, 510, 522
BstKTI GATC 1 cut(s) 424
BstMAI GTCTC 1 cut(s) 497
BstMBI GATC 1 cut(s) 421
BstMWI GCNNNNNNNGC 1 cut(s) 166
BstNI CCWGG 1 cut(s) 153
BstPAI GACNNNNGTC 1 cut(s) 73
BstSCI CCNGG 3 cut(s) 151, 363, 455
BstSFI CTRYAG 1 cut(s) 109
BstUI CGCG 2 cut(s) 315, 508
BstV1I GCAGC 4 cut(s) 22, 44, 153, 468
BstV2I GAAGAC 1 cut(s) 175
BsuI GTATCC 1 cut(s) 127
BsuRI GGCC 4 cut(s) 48, 62, 115, 428
BtsCI GGATG 1 cut(s) 359
BtsI GCAGTG 1 cut(s) 221
BtsIMutI CAGTG 3 cut(s) 221, 255, 291
Cac8I GCNNGC 3 cut(s) 164, 315, 518
CciI TCATGA 1 cut(s) 186
CfoI GCGC 5 cut(s) 162, 315, 317, 510, 522
Cfr10I RCCGGY 3 cut(s) 62, 303, 516
Cfr13I GGNCC 2 cut(s) 46, 68
CseI GACGC 2 cut(s) 363, 514
Csp6I GTAC 3 cut(s) 171, 296, 525
CviAII CATG 4 cut(s) 92, 175, 187, 269
CviQI GTAC 3 cut(s) 171, 296, 525
DinI GGCGCC 1 cut(s) 521
DpnI GATC 1 cut(s) 423
DpnII GATC 1 cut(s) 421
EaeI YGGCCR 2 cut(s) 60, 426
EciI GGCGGA 1 cut(s) 462
Eco147I AGGCCT 1 cut(s) 115
Eco24I GRGCYC 1 cut(s) 13
Eco47I GGWCC 1 cut(s) 68
EcoRI GAATTC 1 cut(s) 440
EcoRII CCWGG 1 cut(s) 151
EcoT38I GRGCYC 1 cut(s) 13
EgeI GGCGCC 1 cut(s) 521
EheI GGCGCC 1 cut(s) 521
Esp3I CGTCTC 1 cut(s) 497
FaeI CATG 4 cut(s) 95, 178, 190, 272
FaiI YATR 5 cut(s) 93, 148, 176, 188, 270
FaqI GGGAC 1 cut(s) 263
FatI CATG 4 cut(s) 91, 174, 186, 268
FauI CCCGC 1 cut(s) 12
Fnu4HI GCNGC 5 cut(s) 33, 36, 167, 194, 482
FokI GGATG 1 cut(s) 346
FriOI GRGCYC 1 cut(s) 13
Fsp4HI GCNGC 5 cut(s) 33, 36, 167, 194, 482
FspBI CTAG 2 cut(s) 231, 393
GlaI GCGC 5 cut(s) 161, 314, 316, 509, 521
GluI GCNGC 5 cut(s) 33, 36, 167, 194, 482
GsaI CCCAGC 1 cut(s) 498
GsuI CTGGAG 2 cut(s) 319, 506
HaeII RGCGCY 1 cut(s) 523
HaeIII GGCC 4 cut(s) 48, 62, 115, 428
HapII CCGG 6 cut(s) 63, 304, 365, 429, 456, 517
HgaI GACGC 2 cut(s) 363, 514
HhaI GCGC 5 cut(s) 162, 315, 317, 510, 522
Hin1I GRCGYC 2 cut(s) 276, 520
Hin1II CATG 4 cut(s) 95, 178, 190, 272
Hin6I GCGC 5 cut(s) 160, 313, 315, 508, 520
HinP1I GCGC 5 cut(s) 160, 313, 315, 508, 520
HinfI GANTC 2 cut(s) 332, 450
HpaII CCGG 6 cut(s) 63, 304, 365, 429, 456, 517
HphI GGTGA 1 cut(s) 38
Hpy166II GTNNAC 1 cut(s) 68
Hpy188III TCNNGA 1 cut(s) 187
Hpy8I GTNNAC 1 cut(s) 68
Hpy99I CGWCG 2 cut(s) 18, 379
HpyCH4III ACNGT 2 cut(s) 295, 529
HpyCH4IV ACGT 1 cut(s) 276
HpyCH4V TGCA 1 cut(s) 32
HpyF10VI GCNNNNNNNGC 1 cut(s) 166
HpySE526I ACGT 1 cut(s) 276
Hsp92I GRCGYC 2 cut(s) 276, 520
Hsp92II CATG 4 cut(s) 95, 178, 190, 272
HspAI GCGC 5 cut(s) 160, 313, 315, 508, 520
KasI GGCGCC 1 cut(s) 519
KroI GCCGGC 1 cut(s) 516
KroNI GCCGGC 1 cut(s) 518
Kzo9I GATC 1 cut(s) 421
Lsp1109I GCAGC 4 cut(s) 22, 44, 153, 468
LweI GCATC 1 cut(s) 19
MaeI CTAG 2 cut(s) 231, 393
MaeII ACGT 1 cut(s) 276
MaeIII GTNAC 2 cut(s) 219, 253
MalI GATC 1 cut(s) 423
MboI GATC 1 cut(s) 421
MboII GAAGA 1 cut(s) 175
MfeI CAATTG 1 cut(s) 214
MhlI GDGCHC 1 cut(s) 13
MluCI AATT 5 cut(s) 118, 214, 245, 379, 440
Mly113I GGCGCC 1 cut(s) 520
MlyI GAGTC 2 cut(s) 326, 444
MreI CGCCGGCG 1 cut(s) 516
MroNI GCCGGC 1 cut(s) 516
MseI TTAA 1 cut(s) 556
MspA1I CMGCKG 1 cut(s) 35
MspI CCGG 6 cut(s) 63, 304, 365, 429, 456, 517
MspR9I CCNGG 3 cut(s) 153, 365, 457
MunI CAATTG 1 cut(s) 214
MvaI CCWGG 1 cut(s) 153
MvnI CGCG 2 cut(s) 315, 508
MwoI GCNNNNNNNGC 1 cut(s) 166
NaeI GCCGGC 1 cut(s) 518
NarI GGCGCC 1 cut(s) 520
NciI CCSGG 2 cut(s) 365, 457
NdeII GATC 1 cut(s) 421
NgoMIV GCCGGC 1 cut(s) 516
NlaIII CATG 4 cut(s) 95, 178, 190, 272
NlaIV GGNNCC 2 cut(s) 302, 521
NmuCI GTSAC 2 cut(s) 219, 253
PagI TCATGA 1 cut(s) 186
PalAI GGCGCGCC 1 cut(s) 313
PauI GCGCGC 1 cut(s) 313
PceI AGGCCT 1 cut(s) 115
PcsI WCGNNNNNNNCGW 2 cut(s) 304, 520
PdiI GCCGGC 1 cut(s) 518
Pfl23II CGTACG 1 cut(s) 524
PfoI TCCNGGA 1 cut(s) 151
PkrI GCNGC 5 cut(s) 34, 37, 168, 195, 483
PleI GAGTC 2 cut(s) 326, 444
PluTI GGCGCC 1 cut(s) 523
PpsI GAGTC 2 cut(s) 326, 444
PshAI GACNNNNGTC 1 cut(s) 73
Psp6I CCWGG 1 cut(s) 151
PspFI CCCAGC 1 cut(s) 494
PspGI CCWGG 1 cut(s) 151
PspLI CGTACG 1 cut(s) 524
PspN4I GGNNCC 2 cut(s) 302, 521
PspPI GGNCC 2 cut(s) 46, 68
PteI GCGCGC 1 cut(s) 313
PvuII CAGCTG 1 cut(s) 35
RsaI GTAC 3 cut(s) 172, 297, 526
RsaNI GTAC 3 cut(s) 171, 296, 525
SaqAI TTAA 1 cut(s) 556
SatI GCNGC 5 cut(s) 33, 36, 167, 194, 482
Sau3AI GATC 1 cut(s) 421
Sau96I GGNCC 2 cut(s) 46, 68
SchI GAGTC 2 cut(s) 326, 444
ScrFI CCNGG 3 cut(s) 153, 365, 457
SduI GDGCHC 1 cut(s) 13
SetI ASST 7 cut(s) 28, 37, 73, 91, 279, 483, 556
SfaNI GCATC 1 cut(s) 19
SfcI CTRYAG 1 cut(s) 109
SfoI GGCGCC 1 cut(s) 521
SgrAI CRCCGGYG 2 cut(s) 303, 516
SgsI GGCGCGCC 1 cut(s) 313
SinI GGWCC 1 cut(s) 68
Sse9I AATT 5 cut(s) 118, 214, 245, 379, 440
SseBI AGGCCT 1 cut(s) 115
SsiI CCGC 5 cut(s) 19, 193, 272, 447, 549
SspDI GGCGCC 1 cut(s) 519
SspMI CTAG 2 cut(s) 231, 393
StuI AGGCCT 1 cut(s) 115
StyD4I CCNGG 3 cut(s) 151, 363, 455
TaaI ACNGT 2 cut(s) 295, 529
TaiI ACGT 1 cut(s) 279
TaqI TCGA 3 cut(s) 13, 85, 377
TasI AATT 5 cut(s) 118, 214, 245, 379, 440
TauI GCSGC 1 cut(s) 196
Tru1I TTAA 1 cut(s) 556
Tru9I TTAA 1 cut(s) 556
TscAI CASTG 3 cut(s) 228, 262, 298
TseFI GTSAC 2 cut(s) 219, 253
TseI GCWGC 4 cut(s) 32, 35, 166, 481
Tsp45I GTSAC 2 cut(s) 219, 253
TspDTI ATGAA 2 cut(s) 175, 257
TspGWI ACGGA 2 cut(s) 344, 552
TspRI CASTG 3 cut(s) 228, 262, 298
VpaK11BI GGWCC 1 cut(s) 68
XapI RAATTY 3 cut(s) 245, 379, 440
XspI CTAG 2 cut(s) 231, 393
ZraI GACGTC 1 cut(s) 277
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.