Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0000118

Physical Location & Seq

Genomic Coordinates Reverse (-)

33884063 .. 33885812

Gene Structure 1750 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g43843.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGAGTTATTTCCCCAATCCAACTCAGGCTAGATTTTTTGGGGAGATATCTAACCTAGGTGAGAGGAGAACATCAGCCCAGGTGACTTGCGCCACATCAGCTGAACCCACTACGTGGAGGACGCCAAGGGGCTGCCGGGATGGTTGCGCGGCTGATCCAAGGCCGGAGGAGGCCTGGTGCACTCGTTGCCGGGGTCGCACAAGGCAGAGGGTCTGCTTGCTGCTGTGCGTGCGGAGCGGCTGGGCGTGCGGAGGAGGTTGGGCGTGCGGAGCGGCTGGGCGTGCAAAGGACGCTGGAGTTGCGTTGCTTGCTGCTGTGCGTGCGGAGCGGCTGGGCCTGCGGAGGAGACTGGGGTGGTCGCCGTCAGAGGAGGCTGGGGTGCGTGCGGAGCTGCTGTTCGTCGTCAGCCCAGAGAAAAAATCTGGATGCCCAGAGAAGAAACGGCAGCCCAAAACTAAGAAGTCGCAACTAGGAGGTGCCTTTCTTCCTCGTCCGACTGTTTGCACCGCGACGCCGGTGCCGGCTTCAGGCCGTTCTAGCGTCTGCAAGGTGTGGTCGGACGGGACTCCCTGGTCGGTGCAAGGTGGCGGAAGATCTCAGGTGATCTCGCTGAGGCTGTTGGGAATGAGAACCAAGAGAGCTAGTACTCAGACGCAAAAACTGGGTTTGAATAACTTGTCTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

U-box

Protein Analysis

229

Amino Acids

24.66

Weight (kDa)

10.46

Isoelectric Point (pI)

56.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000118)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g01361 FvH4_1g07161 FvH4_1g07431 FvH4_1g07821 FvH4_1g08223 FvH4_1g10041 FvH4_1g12132 FvH4_1g15053 FvH4_1g18161 FvH4_1g18400 FvH4_1g18931 FvH4_1g19242 FvH4_1g19461 FvH4_1g20550 FvH4_1g21381 FvH4_1g21542 FvH4_1g22102 FvH4_1g23991 FvH4_1g24542 FvH4_1g24951 FvH4_1g24960 FvH4_1g25272 FvH4_1g25552 FvH4_1g25771 FvH4_1g28771 FvH4_1g29201 FvH4_1g29611 FvH4_2g01181 FvH4_2g02491 FvH4_2g04621 FvH4_2g04631 FvH4_2g07460 FvH4_2g08540 FvH4_2g08550 FvH4_2g09292 FvH4_2g10501 FvH4_2g12101 FvH4_2g12220 FvH4_2g12551 FvH4_2g14071 FvH4_2g14241 FvH4_2g15041 FvH4_2g15311 FvH4_2g18971 FvH4_2g19220 FvH4_2g19260 FvH4_2g19611 FvH4_2g19652 FvH4_2g20211 FvH4_2g20231 FvH4_2g21541 FvH4_2g22380 FvH4_2g27712 FvH4_2g28171 FvH4_2g29879 FvH4_2g32391 FvH4_3g02171 FvH4_3g05531 FvH4_3g09750 FvH4_3g10310 FvH4_3g10460 FvH4_3g13172 FvH4_3g15232 FvH4_3g18481 FvH4_3g18621 FvH4_3g20504 FvH4_3g20812 FvH4_3g22320 FvH4_3g22930 FvH4_3g22940 FvH4_3g23752 FvH4_3g24791 FvH4_3g26411 FvH4_3g26432 FvH4_3g27201 FvH4_3g27862 FvH4_3g28871 FvH4_3g28954 FvH4_3g29131 FvH4_3g29832 FvH4_3g29922 FvH4_3g30190 FvH4_3g32231 FvH4_3g32250 FvH4_3g33460 FvH4_3g34670 FvH4_3g36982 FvH4_3g37001 FvH4_3g38252 FvH4_3g38772 FvH4_3g40141 FvH4_3g40181 FvH4_3g42521 FvH4_4g00090 FvH4_4g00290 FvH4_4g00301 FvH4_4g00530 FvH4_4g00823 FvH4_4g02300 FvH4_4g02450 FvH4_4g03360 FvH4_4g04481 FvH4_4g04761 FvH4_4g06301 FvH4_4g06630 FvH4_4g08312 FvH4_4g08552 FvH4_4g10053 FvH4_4g11971 FvH4_4g13211 FvH4_4g13511 FvH4_4g15351 FvH4_4g16360 FvH4_4g16601 FvH4_4g18462 FvH4_4g22911 FvH4_4g23221 FvH4_4g24301 FvH4_4g24721 FvH4_4g27905 FvH4_4g28971 FvH4_4g29540 FvH4_4g30720 FvH4_4g31521 FvH4_4g33371 FvH4_4g34111 FvH4_4g35740 FvH4_5g00131 FvH4_5g02530 FvH4_5g02550 FvH4_5g02560 FvH4_5g02580 FvH4_5g03783 FvH4_5g05681 FvH4_5g05681 FvH4_5g09371 FvH4_5g09381 FvH4_5g14611 FvH4_5g15341 FvH4_5g19801 FvH4_5g20110 FvH4_5g20911 FvH4_5g22230 FvH4_5g25751 FvH4_5g26070 FvH4_5g26471 FvH4_5g27072 FvH4_5g27471 FvH4_5g27471 FvH4_5g27998 FvH4_5g28291 FvH4_5g30951 FvH4_5g31082 FvH4_5g31890 FvH4_5g32251 FvH4_5g34112 FvH4_5g37184 FvH4_5g37993 FvH4_5g38271 FvH4_6g00153 FvH4_6g00640 FvH4_6g05921 FvH4_6g08591 FvH4_6g09511 FvH4_6g10331 FvH4_6g10401 FvH4_6g14161 FvH4_6g14171 FvH4_6g18481 FvH4_6g19721 FvH4_6g19980 FvH4_6g20104 FvH4_6g20112 FvH4_6g21261 FvH4_6g21651 FvH4_6g22051 FvH4_6g23141 FvH4_6g24822 FvH4_6g25082 FvH4_6g25391 FvH4_6g25560 FvH4_6g26350 FvH4_6g27031 FvH4_6g27810 FvH4_6g27971 FvH4_6g28331 FvH4_6g29391 FvH4_6g30781 FvH4_6g32221 FvH4_6g34680 FvH4_6g36181 FvH4_6g36551 FvH4_6g37491 FvH4_6g37663 FvH4_6g39590 FvH4_6g40582 FvH4_6g43843 FvH4_6g50551 FvH4_7g00240 FvH4_7g00731 FvH4_7g01031 FvH4_7g03301 FvH4_7g08180 FvH4_7g08180 FvH4_7g10631 FvH4_7g19710 FvH4_7g23892 FvH4_7g25280 FvH4_7g25551 FvH4_7g30121 FvH4_7g31931 FvH4_7g32672 FvH4_c21g00040 FvH4_c2g00053
prunus_persica	Prupe.1G448800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0322451 RchiOBHm_Chr5g0015171
rosa_laevigata	RLG00000003077 RLG00000018186 RLG00000030343
rosa_multiflora	Rmu_co8096726.1_g000001
rosa_roxburghii	Rroxscaffold_157G00438380 Rroxscaffold_1G00001730 Rroxscaffold_3G00236310
rosa_rugosa	Rorug02G0236500
rosa_samantha	Rh4BG247300 Rh6BG286200 Rh6CG287300 Rh7DG257500

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	571
AccB1I	GGYRCC	2 cut(s)	476, 517
AccB7I	CCANNNNNTGG	1 cut(s)	114
AccBSI	CCGCTC	3 cut(s)	237, 272, 328
AccII	CGCG	2 cut(s)	149, 509
AclWI	GGATC	1 cut(s)	149
AcuI	CTGAAG	1 cut(s)	510
AcyI	GRCGYC	2 cut(s)	122, 512
AdeI	CACNNNGTG	1 cut(s)	114
AfaI	GTAC	1 cut(s)	646
AfiI	CCNNNNNNNGG	2 cut(s)	114, 527
AgsI	TTSAA	1 cut(s)	670
AjnI	CCWGG	3 cut(s)	78, 173, 569
AloI	GAACNNNNNNTCC	2 cut(s)	380, 412
AluBI	AGCT	3 cut(s)	101, 391, 641
AluI	AGCT	3 cut(s)	101, 391, 641
Alw21I	GWGCWC	1 cut(s)	182
Alw26I	GTCTC	1 cut(s)	340
Alw44I	GTGCAC	1 cut(s)	178
AlwI	GGATC	1 cut(s)	149
AoxI	GGCC	4 cut(s)	161, 171, 334, 529
ApaLI	GTGCAC	1 cut(s)	178
ApeKI	GCWGC	5 cut(s)	132, 220, 311, 391, 445
AspA2I	CCTAGG	1 cut(s)	55
AspLEI	GCGC	2 cut(s)	92, 149
AspS9I	GGNCC	1 cut(s)	334
AsuC2I	CCSGG	2 cut(s)	137, 191
AsuHPI	GGTGA	3 cut(s)	71, 94, 613
AvrII	CCTAGG	1 cut(s)	55
BaeGI	GKGCMC	1 cut(s)	182
BanI	GGYRCC	2 cut(s)	476, 517
Bbv12I	GWGCWC	1 cut(s)	182
BbvCI	CCTCAGC	1 cut(s)	611
BbvI	GCAGC	5 cut(s)	119, 207, 298, 378, 457
BccI	CCATC	1 cut(s)	134
BceAI	ACGGC	3 cut(s)	346, 458, 516
BcgI	CGANNNNNNTGC	2 cut(s)	499, 533
BciT130I	CCWGG	3 cut(s)	80, 175, 571
BcnI	CCSGG	2 cut(s)	137, 191
BcoDI	GTCTC	1 cut(s)	340
BfaI	CTAG	5 cut(s)	30, 56, 470, 537, 642
BglII	AGATCT	1 cut(s)	593
BisI	GCNGC	9 cut(s)	133, 150, 221, 238, 273, 312, 329, 392, 446
BlnI	CCTAGG	1 cut(s)	55
BlsI	GCNGC	9 cut(s)	134, 151, 222, 239, 274, 313, 330, 393, 447
BmcAI	AGTACT	1 cut(s)	646
Bme1390I	CCNGG	5 cut(s)	80, 137, 175, 191, 571
BmgT120I	GGNCC	1 cut(s)	334
BmiI	GGNNCC	2 cut(s)	478, 519
BmrFI	CCNGG	5 cut(s)	80, 137, 175, 191, 571
BmrI	ACTGGG	2 cut(s)	359, 671
BmsI	GCATC	1 cut(s)	416
BmuI	ACTGGG	2 cut(s)	359, 671
BpmI	CTGGAG	1 cut(s)	315
Bpu10I	CCTNAGC	1 cut(s)	611
BpuMI	CCSGG	2 cut(s)	137, 191
BsaAI	YACGTR	1 cut(s)	114
BsaHI	GRCGYC	2 cut(s)	122, 512
BsaJI	CCNNGG	6 cut(s)	55, 78, 125, 158, 190, 569
BsaXI	ACNNNNNCTCC	4 cut(s)	161, 191, 380, 410
Bsc4I	CCNNNNNNNGG	2 cut(s)	114, 527
Bse118I	RCCGGY	2 cut(s)	514, 520
Bse1I	ACTGG	2 cut(s)	354, 666
BseBI	CCWGG	3 cut(s)	80, 175, 571
BseDI	CCNNGG	6 cut(s)	55, 78, 125, 158, 190, 569
BseGI	GGATG	2 cut(s)	145, 431
BseLI	CCNNNNNNNGG	2 cut(s)	114, 527
BseMII	CTCAG	4 cut(s)	38, 602, 611, 662
BseNI	ACTGG	2 cut(s)	354, 666
BseRI	GAGGAG	5 cut(s)	79, 182, 267, 358, 383
BseSI	GKGCMC	1 cut(s)	182
BseXI	GCAGC	5 cut(s)	119, 207, 298, 378, 457
BseYI	CCCAGC	4 cut(s)	240, 275, 331, 374
Bsh1236I	CGCG	2 cut(s)	149, 509
BshFI	GGCC	4 cut(s)	163, 173, 336, 531
BshNI	GGYRCC	2 cut(s)	476, 517
BsiHKAI	GWGCWC	1 cut(s)	182
BsiSI	CCGG	5 cut(s)	136, 164, 190, 515, 521
BslFI	GGGAC	1 cut(s)	577
BslI	CCNNNNNNNGG	2 cut(s)	114, 527
BsmAI	GTCTC	1 cut(s)	340
BsmFI	GGGAC	1 cut(s)	577
BsnI	GGCC	4 cut(s)	163, 173, 336, 531
Bsp1286I	GDGCHC	1 cut(s)	182
Bsp143I	GATC	3 cut(s)	154, 593, 603
BspANI	GGCC	4 cut(s)	163, 173, 336, 531
BspCNI	CTCAG	4 cut(s)	37, 603, 610, 661
BspFNI	CGCG	2 cut(s)	149, 509
BspLI	GGNNCC	2 cut(s)	478, 519
BspPI	GGATC	1 cut(s)	149
BspT107I	GGYRCC	2 cut(s)	476, 517
BsrBI	CCGCTC	3 cut(s)	237, 272, 328
BsrFI	RCCGGY	2 cut(s)	514, 520
BsrI	ACTGG	2 cut(s)	354, 666
BssAI	RCCGGY	2 cut(s)	514, 520
BssECI	CCNNGG	6 cut(s)	55, 78, 125, 158, 190, 569
BssMI	GATC	3 cut(s)	154, 593, 603
BssNI	GRCGYC	2 cut(s)	122, 512
BssT1I	CCWWGG	3 cut(s)	55, 125, 158
Bst2UI	CCWGG	3 cut(s)	80, 175, 571
Bst4CI	ACNGT	1 cut(s)	499
BstACI	GRCGYC	2 cut(s)	122, 512
BstAPI	GCANNNNNTGC	1 cut(s)	186
BstBAI	YACGTR	1 cut(s)	114
BstDEI	CTNAG	5 cut(s)	24, 456, 597, 611, 648
BstF5I	GGATG	2 cut(s)	145, 431
BstFNI	CGCG	2 cut(s)	149, 509
BstHHI	GCGC	2 cut(s)	92, 149
BstKTI	GATC	3 cut(s)	157, 596, 606
BstMAI	GTCTC	1 cut(s)	340
BstMBI	GATC	3 cut(s)	154, 593, 603
BstNI	CCWGG	3 cut(s)	80, 175, 571
BstSCI	CCNGG	5 cut(s)	78, 135, 173, 189, 569
BstSLI	GKGCMC	1 cut(s)	182
BstUI	CGCG	2 cut(s)	149, 509
BstV1I	GCAGC	5 cut(s)	119, 207, 298, 378, 457
BstX2I	RGATCY	1 cut(s)	593
BstYI	RGATCY	1 cut(s)	593
BsuRI	GGCC	4 cut(s)	163, 173, 336, 531
BtsCI	GGATG	2 cut(s)	145, 431
CfoI	GCGC	2 cut(s)	92, 149
Cfr10I	RCCGGY	2 cut(s)	514, 520
Cfr13I	GGNCC	1 cut(s)	334
CseI	GACGC	5 cut(s)	130, 299, 520, 529, 661
Csp6I	GTAC	1 cut(s)	645
CviQI	GTAC	1 cut(s)	645
DdeI	CTNAG	5 cut(s)	24, 456, 597, 611, 648
DpnI	GATC	3 cut(s)	156, 595, 605
DpnII	GATC	3 cut(s)	154, 593, 603
DraIII	CACNNNGTG	1 cut(s)	114
DrdI	GACNNNNNNGTC	1 cut(s)	571
DseDI	GACNNNNNNGTC	1 cut(s)	571
EciI	GGCGGA	1 cut(s)	603
Eco130I	CCWWGG	3 cut(s)	55, 125, 158
Eco147I	AGGCCT	1 cut(s)	173
Eco32I	GATATC	1 cut(s)	48
Eco57I	CTGAAG	1 cut(s)	510
EcoRII	CCWGG	3 cut(s)	78, 173, 569
EcoRV	GATATC	1 cut(s)	48
EcoT14I	CCWWGG	3 cut(s)	55, 125, 158
ErhI	CCWWGG	3 cut(s)	55, 125, 158
FaqI	GGGAC	1 cut(s)	577
Fnu4HI	GCNGC	9 cut(s)	133, 150, 221, 238, 273, 312, 329, 392, 446
FokI	GGATG	2 cut(s)	152, 438
Fsp4HI	GCNGC	9 cut(s)	133, 150, 221, 238, 273, 312, 329, 392, 446
FspBI	CTAG	5 cut(s)	30, 56, 470, 537, 642
GlaI	GCGC	2 cut(s)	91, 148
GluI	GCNGC	9 cut(s)	133, 150, 221, 238, 273, 312, 329, 392, 446
GsaI	CCCAGC	4 cut(s)	244, 279, 335, 378
GsuI	CTGGAG	1 cut(s)	315
HaeIII	GGCC	4 cut(s)	163, 173, 336, 531
HapII	CCGG	5 cut(s)	136, 164, 190, 515, 521
HgaI	GACGC	5 cut(s)	130, 299, 520, 529, 661
HhaI	GCGC	2 cut(s)	92, 149
Hin1I	GRCGYC	2 cut(s)	122, 512
Hin6I	GCGC	2 cut(s)	90, 147
HinP1I	GCGC	2 cut(s)	90, 147
HinfI	GANTC	1 cut(s)	565
HpaII	CCGG	5 cut(s)	136, 164, 190, 515, 521
HphI	GGTGA	3 cut(s)	71, 94, 613
Hpy166II	GTNNAC	1 cut(s)	180
Hpy188I	TCNGA	4 cut(s)	367, 495, 559, 651
Hpy188III	TCNNGA	1 cut(s)	423
Hpy8I	GTNNAC	1 cut(s)	180
Hpy99I	CGWCG	2 cut(s)	404, 514
HpyCH4III	ACNGT	1 cut(s)	499
HpyCH4IV	ACGT	1 cut(s)	113
HpyCH4V	TGCA	5 cut(s)	180, 284, 504, 546, 580
HpyF3I	CTNAG	5 cut(s)	24, 456, 597, 611, 648
HpySE526I	ACGT	1 cut(s)	113
Hsp92I	GRCGYC	2 cut(s)	122, 512
HspAI	GCGC	2 cut(s)	90, 147
KroI	GCCGGC	1 cut(s)	520
KroNI	GCCGGC	1 cut(s)	522
Kzo9I	GATC	3 cut(s)	154, 593, 603
LmnI	GCTCC	4 cut(s)	234, 269, 325, 388
Lsp1109I	GCAGC	5 cut(s)	119, 207, 298, 378, 457
LweI	GCATC	1 cut(s)	416
MaeI	CTAG	5 cut(s)	30, 56, 470, 537, 642
MaeII	ACGT	1 cut(s)	113
MaeIII	GTNAC	1 cut(s)	82
MalI	GATC	3 cut(s)	156, 595, 605
MbiI	CCGCTC	3 cut(s)	237, 272, 328
MboI	GATC	3 cut(s)	154, 593, 603
MboII	GAAGA	3 cut(s)	448, 476, 603
MflI	RGATCY	1 cut(s)	593
MhlI	GDGCHC	1 cut(s)	182
MlyI	GAGTC	1 cut(s)	559
MmeI	TCCRAC	3 cut(s)	44, 518, 537
MroNI	GCCGGC	1 cut(s)	520
MspA1I	CMGCKG	1 cut(s)	101
MspI	CCGG	5 cut(s)	136, 164, 190, 515, 521
MspR9I	CCNGG	5 cut(s)	80, 137, 175, 191, 571
MvaI	CCWGG	3 cut(s)	80, 175, 571
MvnI	CGCG	2 cut(s)	149, 509
NaeI	GCCGGC	1 cut(s)	522
NciI	CCSGG	2 cut(s)	137, 191
NdeII	GATC	3 cut(s)	154, 593, 603
NgoMIV	GCCGGC	1 cut(s)	520
NlaIV	GGNNCC	2 cut(s)	478, 519
NmuCI	GTSAC	1 cut(s)	82
PceI	AGGCCT	1 cut(s)	173
PdiI	GCCGGC	1 cut(s)	522
PflMI	CCANNNNNTGG	1 cut(s)	114
PkrI	GCNGC	9 cut(s)	134, 151, 222, 239, 274, 313, 330, 393, 447
PleI	GAGTC	1 cut(s)	559
PpsI	GAGTC	1 cut(s)	559
Ppu21I	YACGTR	1 cut(s)	114
Psp6I	CCWGG	3 cut(s)	78, 173, 569
PspFI	CCCAGC	4 cut(s)	240, 275, 331, 374
PspGI	CCWGG	3 cut(s)	78, 173, 569
PspN4I	GGNNCC	2 cut(s)	478, 519
PspPI	GGNCC	1 cut(s)	334
PsuI	RGATCY	1 cut(s)	593
PvuII	CAGCTG	1 cut(s)	101
RsaI	GTAC	1 cut(s)	646
RsaNI	GTAC	1 cut(s)	645
SatI	GCNGC	9 cut(s)	133, 150, 221, 238, 273, 312, 329, 392, 446
Sau3AI	GATC	3 cut(s)	154, 593, 603
Sau96I	GGNCC	1 cut(s)	334
ScaI	AGTACT	1 cut(s)	646
SchI	GAGTC	1 cut(s)	559
ScrFI	CCNGG	5 cut(s)	80, 137, 175, 191, 571
SduI	GDGCHC	1 cut(s)	182
SfaNI	GCATC	1 cut(s)	416
SgrAI	CRCCGGYG	1 cut(s)	514
SseBI	AGGCCT	1 cut(s)	173
SspMI	CTAG	5 cut(s)	30, 56, 470, 537, 642
StuI	AGGCCT	1 cut(s)	173
StyD4I	CCNGG	5 cut(s)	78, 135, 173, 189, 569
StyI	CCWWGG	3 cut(s)	55, 125, 158
TaaI	ACNGT	1 cut(s)	499
TaiI	ACGT	1 cut(s)	116
TatI	WGTACW	1 cut(s)	644
TauI	GCSGC	4 cut(s)	152, 240, 275, 331
TseFI	GTSAC	1 cut(s)	82
TseI	GCWGC	5 cut(s)	132, 220, 311, 391, 445
Tsp45I	GTSAC	1 cut(s)	82
Van91I	CCANNNNNTGG	1 cut(s)	114
VneI	GTGCAC	1 cut(s)	178
XmaJI	CCTAGG	1 cut(s)	55
XspI	CTAG	5 cut(s)	30, 56, 470, 537, 642
ZrmI	AGTACT	1 cut(s)	646

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.