FvH4_2g28171

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000118
Physical Location & Seq
Reverse (-)
22182684 .. 22183458
775 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g28171.t1

Sequence Viewer

Length: 333 bp
ATGGGGAGCAACGTTGCTATGGGATTTTCGCCGTTTCTCCACCATTCCAGCGCCGACGACGCCGTTTCTTCTTCTGGCGTGATCCCAAACCTTCTCCGACGGTGTTGGAATGAAGAAAAAGGCCGGAGAGATCGCGATCGGAGGTCCACCATGATCGATCGTGAAGTTCTGAGTGAGATTGCTGTACAGACCTCCGATCGCGATCTCTCCGGCCTTCTTCTTCATTCCAACACCATCGGGGGAGGTATGGGATTACGCCGGGGAGAAGAAACAGCGTCGCTGGCGCTGGAATGGTGGAGAAACGACGGAAATCCGTACGGACGTCCGCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

111

Amino Acids

12.24

Weight (kDa)

6.41

Isoelectric Point (pI)

57.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000118)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01361 FvH4_1g07161 FvH4_1g07431 FvH4_1g07821 FvH4_1g08223 FvH4_1g10041 FvH4_1g12132 FvH4_1g15053 FvH4_1g18161 FvH4_1g18400 FvH4_1g18931 FvH4_1g19242 FvH4_1g19461 FvH4_1g20550 FvH4_1g21381 FvH4_1g21542 FvH4_1g22102 FvH4_1g23991 FvH4_1g24542 FvH4_1g24951 FvH4_1g24960 FvH4_1g25272 FvH4_1g25552 FvH4_1g25771 FvH4_1g28771 FvH4_1g29201 FvH4_1g29611 FvH4_2g01181 FvH4_2g02491 FvH4_2g04621 FvH4_2g04631 FvH4_2g07460 FvH4_2g08540 FvH4_2g08550 FvH4_2g09292 FvH4_2g10501 FvH4_2g12101 FvH4_2g12220 FvH4_2g12551 FvH4_2g14071 FvH4_2g14241 FvH4_2g15041 FvH4_2g15311 FvH4_2g18971 FvH4_2g19220 FvH4_2g19260 FvH4_2g19611 FvH4_2g19652 FvH4_2g20211 FvH4_2g20231 FvH4_2g21541 FvH4_2g22380 FvH4_2g27712 FvH4_2g28171 FvH4_2g29879 FvH4_2g32391 FvH4_3g02171 FvH4_3g05531 FvH4_3g09750 FvH4_3g10310 FvH4_3g10460 FvH4_3g13172 FvH4_3g15232 FvH4_3g18481 FvH4_3g18621 FvH4_3g20504 FvH4_3g20812 FvH4_3g22320 FvH4_3g22930 FvH4_3g22940 FvH4_3g23752 FvH4_3g24791 FvH4_3g26411 FvH4_3g26432 FvH4_3g27201 FvH4_3g27862 FvH4_3g28871 FvH4_3g28954 FvH4_3g29131 FvH4_3g29832 FvH4_3g29922 FvH4_3g30190 FvH4_3g32231 FvH4_3g32250 FvH4_3g33460 FvH4_3g34670 FvH4_3g36982 FvH4_3g37001 FvH4_3g38252 FvH4_3g38772 FvH4_3g40141 FvH4_3g40181 FvH4_3g42521 FvH4_4g00090 FvH4_4g00290 FvH4_4g00301 FvH4_4g00530 FvH4_4g00823 FvH4_4g02300 FvH4_4g02450 FvH4_4g03360 FvH4_4g04481 FvH4_4g04761 FvH4_4g06301 FvH4_4g06630 FvH4_4g08312 FvH4_4g08552 FvH4_4g10053 FvH4_4g11971 FvH4_4g13211 FvH4_4g13511 FvH4_4g15351 FvH4_4g16360 FvH4_4g16601 FvH4_4g18462 FvH4_4g22911 FvH4_4g23221 FvH4_4g24301 FvH4_4g24721 FvH4_4g27905 FvH4_4g28971 FvH4_4g29540 FvH4_4g30720 FvH4_4g31521 FvH4_4g33371 FvH4_4g34111 FvH4_4g35740 FvH4_5g00131 FvH4_5g02530 FvH4_5g02550 FvH4_5g02560 FvH4_5g02580 FvH4_5g03783 FvH4_5g05681 FvH4_5g05681 FvH4_5g09371 FvH4_5g09381 FvH4_5g14611 FvH4_5g15341 FvH4_5g19801 FvH4_5g20110 FvH4_5g20911 FvH4_5g22230 FvH4_5g25751 FvH4_5g26070 FvH4_5g26471 FvH4_5g27072 FvH4_5g27471 FvH4_5g27471 FvH4_5g27998 FvH4_5g28291 FvH4_5g30951 FvH4_5g31082 FvH4_5g31890 FvH4_5g32251 FvH4_5g34112 FvH4_5g37184 FvH4_5g37993 FvH4_5g38271 FvH4_6g00153 FvH4_6g00640 FvH4_6g05921 FvH4_6g08591 FvH4_6g09511 FvH4_6g10331 FvH4_6g10401 FvH4_6g14161 FvH4_6g14171 FvH4_6g18481 FvH4_6g19721 FvH4_6g19980 FvH4_6g20104 FvH4_6g20112 FvH4_6g21261 FvH4_6g21651 FvH4_6g22051 FvH4_6g23141 FvH4_6g24822 FvH4_6g25082 FvH4_6g25391 FvH4_6g25560 FvH4_6g26350 FvH4_6g27031 FvH4_6g27810 FvH4_6g27971 FvH4_6g28331 FvH4_6g29391 FvH4_6g30781 FvH4_6g32221 FvH4_6g34680 FvH4_6g36181 FvH4_6g36551 FvH4_6g37491 FvH4_6g37663 FvH4_6g39590 FvH4_6g40582 FvH4_6g43843 FvH4_6g50551 FvH4_7g00240 FvH4_7g00731 FvH4_7g01031 FvH4_7g03301 FvH4_7g08180 FvH4_7g08180 FvH4_7g10631 FvH4_7g19710 FvH4_7g23892 FvH4_7g25280 FvH4_7g25551 FvH4_7g30121 FvH4_7g31931 FvH4_7g32672 FvH4_c21g00040 FvH4_c2g00053
prunus_persica Prupe.1G448800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322451 RchiOBHm_Chr5g0015171
rosa_laevigata RLG00000003077 RLG00000018186 RLG00000030343
rosa_multiflora Rmu_co8096726.1_g000001
rosa_roxburghii Rroxscaffold_157G00438380 Rroxscaffold_1G00001730 Rroxscaffold_3G00236310
rosa_rugosa Rorug02G0236500
rosa_samantha Rh4BG247300 Rh6BG286200 Rh6CG287300 Rh7DG257500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 325
AccII CGCG 2 cut(s) 135, 201
AciI CCGC 1 cut(s) 326
AclI AACGTT 1 cut(s) 12
AclWI GGATC 1 cut(s) 76
AcyI GRCGYC 2 cut(s) 60, 322
AfaI GTAC 2 cut(s) 186, 317
AlwI GGATC 1 cut(s) 76
AoxI GGCC 2 cut(s) 121, 211
AspLEI GCGC 2 cut(s) 53, 286
AspS9I GGNCC 1 cut(s) 144
AsuC2I CCSGG 1 cut(s) 260
AvaII GGWCC 1 cut(s) 144
BccI CCATC 1 cut(s) 242
BceAI ACGGC 2 cut(s) 16, 47
BcnI CCSGG 1 cut(s) 260
BfaI CTAG 1 cut(s) 331
BfoI RGCGCY 2 cut(s) 54, 287
Bme1390I CCNGG 1 cut(s) 260
Bme18I GGWCC 1 cut(s) 144
BmgT120I GGNCC 1 cut(s) 144
BmrFI CCNGG 1 cut(s) 260
BpuMI CCSGG 1 cut(s) 260
Bsa29I ATCGAT 1 cut(s) 156
BsaBI GATNNNNATC 2 cut(s) 135, 201
BsaHI GRCGYC 2 cut(s) 60, 322
BsaJI CCNNGG 1 cut(s) 259
Bse8I GATNNNNATC 2 cut(s) 135, 201
BseCI ATCGAT 1 cut(s) 156
BseDI CCNNGG 1 cut(s) 259
BseJI GATNNNNATC 2 cut(s) 135, 201
BseMII CTCAG 1 cut(s) 161
Bsh1236I CGCG 2 cut(s) 135, 201
Bsh1285I CGRYCG 3 cut(s) 139, 160, 199
BshFI GGCC 2 cut(s) 123, 213
BshVI ATCGAT 1 cut(s) 156
BsiEI CGRYCG 3 cut(s) 139, 160, 199
BsiSI CCGG 3 cut(s) 124, 210, 259
BsiWI CGTACG 1 cut(s) 315
BsnI GGCC 2 cut(s) 123, 213
Bsp1407I TGTACA 1 cut(s) 184
Bsp143I GATC 7 cut(s) 81, 130, 136, 153, 157, 196, 202
Bsp68I TCGCGA 2 cut(s) 135, 201
BspACI CCGC 1 cut(s) 326
BspANI GGCC 2 cut(s) 123, 213
BspCNI CTCAG 1 cut(s) 162
BspDI ATCGAT 1 cut(s) 156
BspFNI CGCG 2 cut(s) 135, 201
BspPI GGATC 1 cut(s) 76
BsrGI TGTACA 1 cut(s) 184
BssECI CCNNGG 1 cut(s) 259
BssMI GATC 7 cut(s) 81, 130, 136, 153, 157, 196, 202
BssNI GRCGYC 2 cut(s) 60, 322
Bst4CI ACNGT 1 cut(s) 102
BstACI GRCGYC 2 cut(s) 60, 322
BstAUI TGTACA 1 cut(s) 184
BstC8I GCNNGC 1 cut(s) 282
BstDEI CTNAG 1 cut(s) 170
BstFNI CGCG 2 cut(s) 135, 201
BstH2I RGCGCY 2 cut(s) 54, 287
BstHHI GCGC 2 cut(s) 53, 286
BstKTI GATC 7 cut(s) 84, 133, 139, 156, 160, 199, 205
BstMBI GATC 7 cut(s) 81, 130, 136, 153, 157, 196, 202
BstMCI CGRYCG 3 cut(s) 139, 160, 199
BstMWI GCNNNNNNNGC 2 cut(s) 59, 281
BstSCI CCNGG 1 cut(s) 258
BstUI CGCG 2 cut(s) 135, 201
Bsu15I ATCGAT 1 cut(s) 156
BsuRI GGCC 2 cut(s) 123, 213
BsuTUI ATCGAT 1 cut(s) 156
BtuMI TCGCGA 2 cut(s) 135, 201
Cac8I GCNNGC 1 cut(s) 282
CfoI GCGC 2 cut(s) 53, 286
Cfr13I GGNCC 1 cut(s) 144
ClaI ATCGAT 1 cut(s) 156
CseI GACGC 2 cut(s) 68, 264
Csp6I GTAC 2 cut(s) 185, 316
CviAII CATG 1 cut(s) 151
CviJI RGCY 2 cut(s) 123, 213
CviKI_1 RGCY 2 cut(s) 123, 213
CviQI GTAC 2 cut(s) 185, 316
DdeI CTNAG 1 cut(s) 170
DpnI GATC 7 cut(s) 83, 132, 138, 155, 159, 198, 204
DpnII GATC 7 cut(s) 81, 130, 136, 153, 157, 196, 202
Eco47I GGWCC 1 cut(s) 144
FaeI CATG 1 cut(s) 154
FaiI YATR 3 cut(s) 20, 152, 248
FatI CATG 1 cut(s) 150
FspBI CTAG 1 cut(s) 331
GlaI GCGC 2 cut(s) 52, 285
HaeII RGCGCY 2 cut(s) 54, 287
HaeIII GGCC 2 cut(s) 123, 213
HapII CCGG 3 cut(s) 124, 210, 259
HgaI GACGC 2 cut(s) 68, 264
HhaI GCGC 2 cut(s) 53, 286
Hin1I GRCGYC 2 cut(s) 60, 322
Hin1II CATG 1 cut(s) 154
Hin6I GCGC 2 cut(s) 51, 284
HinP1I GCGC 2 cut(s) 51, 284
HpaII CCGG 3 cut(s) 124, 210, 259
Hpy166II GTNNAC 1 cut(s) 147
Hpy188I TCNGA 4 cut(s) 98, 141, 171, 196
Hpy188III TCNNGA 3 cut(s) 134, 161, 200
Hpy8I GTNNAC 1 cut(s) 147
Hpy99I CGWCG 5 cut(s) 59, 62, 102, 280, 308
HpyAV CCTTC 2 cut(s) 101, 224
HpyCH4III ACNGT 1 cut(s) 102
HpyCH4IV ACGT 2 cut(s) 12, 322
HpyF10VI GCNNNNNNNGC 2 cut(s) 59, 281
HpyF3I CTNAG 1 cut(s) 170
HpySE526I ACGT 2 cut(s) 12, 322
Hsp92I GRCGYC 2 cut(s) 60, 322
Hsp92II CATG 1 cut(s) 154
HspAI GCGC 2 cut(s) 51, 284
Kzo9I GATC 7 cut(s) 81, 130, 136, 153, 157, 196, 202
LmnI GCTCC 1 cut(s) 6
LpnPI CCDG 7 cut(s) 60, 61, 137, 223, 266, 272, 272
MaeI CTAG 1 cut(s) 331
MaeII ACGT 2 cut(s) 12, 322
MalI GATC 7 cut(s) 83, 132, 138, 155, 159, 198, 204
MboI GATC 7 cut(s) 81, 130, 136, 153, 157, 196, 202
MboII GAAGA 6 cut(s) 60, 63, 125, 209, 212, 278
MmeI TCCRAC 3 cut(s) 86, 121, 252
MnlI CCTC 3 cut(s) 135, 202, 236
MspI CCGG 3 cut(s) 124, 210, 259
MspR9I CCNGG 1 cut(s) 260
MvnI CGCG 2 cut(s) 135, 201
MwoI GCNNNNNNNGC 2 cut(s) 59, 281
NciI CCSGG 1 cut(s) 260
NdeII GATC 7 cut(s) 81, 130, 136, 153, 157, 196, 202
NlaIII CATG 1 cut(s) 154
NruI TCGCGA 2 cut(s) 135, 201
Pfl23II CGTACG 1 cut(s) 315
Ple19I CGATCG 3 cut(s) 139, 160, 199
Psp1406I AACGTT 1 cut(s) 12
PspLI CGTACG 1 cut(s) 315
PspPI GGNCC 1 cut(s) 144
PvuI CGATCG 3 cut(s) 139, 160, 199
RruI TCGCGA 2 cut(s) 135, 201
RsaI GTAC 2 cut(s) 186, 317
RsaNI GTAC 2 cut(s) 185, 316
Sau3AI GATC 7 cut(s) 81, 130, 136, 153, 157, 196, 202
Sau96I GGNCC 1 cut(s) 144
ScrFI CCNGG 1 cut(s) 260
SetI ASST 6 cut(s) 15, 93, 146, 194, 247, 325
SinI GGWCC 1 cut(s) 144
SsiI CCGC 1 cut(s) 326
SspMI CTAG 1 cut(s) 331
StyD4I CCNGG 1 cut(s) 258
TaaI ACNGT 1 cut(s) 102
TaiI ACGT 2 cut(s) 15, 325
TaqI TCGA 1 cut(s) 156
TatI WGTACW 1 cut(s) 184
TspDTI ATGAA 2 cut(s) 126, 212
TspGWI ACGGA 3 cut(s) 303, 321, 333
VpaK11BI GGWCC 1 cut(s) 144
XspI CTAG 1 cut(s) 331
ZraI GACGTC 1 cut(s) 323
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.