FvH4_1g22102

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000118
Physical Location & Seq
Forward (+)
14065700 .. 14068454
2755 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g22102.t1

Sequence Viewer

Length: 366 bp
ATGGGAAGCAACAAGATCGGAGATGGAGGGGCTGCGAGATTTGGTGAGCTACGGACGTTCGCACCGTTTTACGGTGCGGATTTCCTTCCGTTCGCCACAGTACGGCGCCGGCGAGGGCACGCCTCTACCCCAGCGGACTCCAGCAGCTTCCCCGACCACTTTCGATCCCCGGCGAGTCCGTCGAATTCCAGTTTTCAGGCCAGATCACCCAAAACTTCAAACAAAGTCAATCTGGCCGGAAAACTGGAATTTGGCAGACTCGTCGGGGATAGAAAGAGGTCGGGGAAGCTGCTGGAGTCCGCTAGGGTGGAGGCGCGCCCTCGCCGGCTCCGTACGGTGGCGAACGAAGGAAAATCCGCACCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

122

Amino Acids

13.11

Weight (kDa)

11.55

Isoelectric Point (pI)

75.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000118)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01361 FvH4_1g07161 FvH4_1g07431 FvH4_1g07821 FvH4_1g08223 FvH4_1g10041 FvH4_1g12132 FvH4_1g15053 FvH4_1g18161 FvH4_1g18400 FvH4_1g18931 FvH4_1g19242 FvH4_1g19461 FvH4_1g20550 FvH4_1g21381 FvH4_1g21542 FvH4_1g22102 FvH4_1g23991 FvH4_1g24542 FvH4_1g24951 FvH4_1g24960 FvH4_1g25272 FvH4_1g25552 FvH4_1g25771 FvH4_1g28771 FvH4_1g29201 FvH4_1g29611 FvH4_2g01181 FvH4_2g02491 FvH4_2g04621 FvH4_2g04631 FvH4_2g07460 FvH4_2g08540 FvH4_2g08550 FvH4_2g09292 FvH4_2g10501 FvH4_2g12101 FvH4_2g12220 FvH4_2g12551 FvH4_2g14071 FvH4_2g14241 FvH4_2g15041 FvH4_2g15311 FvH4_2g18971 FvH4_2g19220 FvH4_2g19260 FvH4_2g19611 FvH4_2g19652 FvH4_2g20211 FvH4_2g20231 FvH4_2g21541 FvH4_2g22380 FvH4_2g27712 FvH4_2g28171 FvH4_2g29879 FvH4_2g32391 FvH4_3g02171 FvH4_3g05531 FvH4_3g09750 FvH4_3g10310 FvH4_3g10460 FvH4_3g13172 FvH4_3g15232 FvH4_3g18481 FvH4_3g18621 FvH4_3g20504 FvH4_3g20812 FvH4_3g22320 FvH4_3g22930 FvH4_3g22940 FvH4_3g23752 FvH4_3g24791 FvH4_3g26411 FvH4_3g26432 FvH4_3g27201 FvH4_3g27862 FvH4_3g28871 FvH4_3g28954 FvH4_3g29131 FvH4_3g29832 FvH4_3g29922 FvH4_3g30190 FvH4_3g32231 FvH4_3g32250 FvH4_3g33460 FvH4_3g34670 FvH4_3g36982 FvH4_3g37001 FvH4_3g38252 FvH4_3g38772 FvH4_3g40141 FvH4_3g40181 FvH4_3g42521 FvH4_4g00090 FvH4_4g00290 FvH4_4g00301 FvH4_4g00530 FvH4_4g00823 FvH4_4g02300 FvH4_4g02450 FvH4_4g03360 FvH4_4g04481 FvH4_4g04761 FvH4_4g06301 FvH4_4g06630 FvH4_4g08312 FvH4_4g08552 FvH4_4g10053 FvH4_4g11971 FvH4_4g13211 FvH4_4g13511 FvH4_4g15351 FvH4_4g16360 FvH4_4g16601 FvH4_4g18462 FvH4_4g22911 FvH4_4g23221 FvH4_4g24301 FvH4_4g24721 FvH4_4g27905 FvH4_4g28971 FvH4_4g29540 FvH4_4g30720 FvH4_4g31521 FvH4_4g33371 FvH4_4g34111 FvH4_4g35740 FvH4_5g00131 FvH4_5g02530 FvH4_5g02550 FvH4_5g02560 FvH4_5g02580 FvH4_5g03783 FvH4_5g05681 FvH4_5g05681 FvH4_5g09371 FvH4_5g09381 FvH4_5g14611 FvH4_5g15341 FvH4_5g19801 FvH4_5g20110 FvH4_5g20911 FvH4_5g22230 FvH4_5g25751 FvH4_5g26070 FvH4_5g26471 FvH4_5g27072 FvH4_5g27471 FvH4_5g27471 FvH4_5g27998 FvH4_5g28291 FvH4_5g30951 FvH4_5g31082 FvH4_5g31890 FvH4_5g32251 FvH4_5g34112 FvH4_5g37184 FvH4_5g37993 FvH4_5g38271 FvH4_6g00153 FvH4_6g00640 FvH4_6g05921 FvH4_6g08591 FvH4_6g09511 FvH4_6g10331 FvH4_6g10401 FvH4_6g14161 FvH4_6g14171 FvH4_6g18481 FvH4_6g19721 FvH4_6g19980 FvH4_6g20104 FvH4_6g20112 FvH4_6g21261 FvH4_6g21651 FvH4_6g22051 FvH4_6g23141 FvH4_6g24822 FvH4_6g25082 FvH4_6g25391 FvH4_6g25560 FvH4_6g26350 FvH4_6g27031 FvH4_6g27810 FvH4_6g27971 FvH4_6g28331 FvH4_6g29391 FvH4_6g30781 FvH4_6g32221 FvH4_6g34680 FvH4_6g36181 FvH4_6g36551 FvH4_6g37491 FvH4_6g37663 FvH4_6g39590 FvH4_6g40582 FvH4_6g43843 FvH4_6g50551 FvH4_7g00240 FvH4_7g00731 FvH4_7g01031 FvH4_7g03301 FvH4_7g08180 FvH4_7g08180 FvH4_7g10631 FvH4_7g19710 FvH4_7g23892 FvH4_7g25280 FvH4_7g25551 FvH4_7g30121 FvH4_7g31931 FvH4_7g32672 FvH4_c21g00040 FvH4_c2g00053
prunus_persica Prupe.1G448800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322451 RchiOBHm_Chr5g0015171
rosa_laevigata RLG00000003077 RLG00000018186 RLG00000030343
rosa_multiflora Rmu_co8096726.1_g000001
rosa_roxburghii Rroxscaffold_157G00438380 Rroxscaffold_1G00001730 Rroxscaffold_3G00236310
rosa_rugosa Rorug02G0236500
rosa_samantha Rh4BG247300 Rh6BG286200 Rh6CG287300 Rh7DG257500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 105
AccII CGCG 1 cut(s) 316
AciI CCGC 4 cut(s) 77, 134, 300, 357
AclWI GGATC 1 cut(s) 159
AcoI YGGCCR 1 cut(s) 234
AcsI RAATTY 2 cut(s) 184, 248
AcyI GRCGYC 1 cut(s) 106
AfaI GTAC 2 cut(s) 102, 334
AfiI CCNNNNNNNGG 3 cut(s) 71, 102, 337
AgsI TTSAA 1 cut(s) 219
AluBI AGCT 3 cut(s) 49, 147, 289
AluI AGCT 3 cut(s) 49, 147, 289
AlwI GGATC 1 cut(s) 159
AoxI GGCC 2 cut(s) 198, 234
ApeKI GCWGC 3 cut(s) 32, 144, 289
ApoI RAATTY 2 cut(s) 184, 248
AscI GGCGCGCC 1 cut(s) 314
AspLEI GCGC 3 cut(s) 108, 316, 318
AsuC2I CCSGG 1 cut(s) 170
AsuHPI GGTGA 2 cut(s) 56, 198
BaeGI GKGCMC 1 cut(s) 120
BanI GGYRCC 1 cut(s) 105
BbvI GCAGC 3 cut(s) 19, 156, 276
BccI CCATC 1 cut(s) 17
BceAI ACGGC 1 cut(s) 119
BcgI CGANNNNNNTGC 3 cut(s) 32, 244, 278
BcnI CCSGG 1 cut(s) 170
BfaI CTAG 1 cut(s) 303
BfoI RGCGCY 1 cut(s) 109
BisI GCNGC 3 cut(s) 33, 145, 290
BlsI GCNGC 3 cut(s) 34, 146, 291
Bme1390I CCNGG 1 cut(s) 170
BmiI GGNNCC 2 cut(s) 107, 329
BmrFI CCNGG 1 cut(s) 170
BpmI CTGGAG 2 cut(s) 124, 314
BpuMI CCSGG 1 cut(s) 170
BsaHI GRCGYC 1 cut(s) 106
BsaJI CCNNGG 1 cut(s) 168
Bsc4I CCNNNNNNNGG 3 cut(s) 71, 102, 337
Bse118I RCCGGY 2 cut(s) 108, 324
Bse1I ACTGG 2 cut(s) 189, 249
BseDI CCNNGG 1 cut(s) 168
BseLI CCNNNNNNNGG 3 cut(s) 71, 102, 337
BseNI ACTGG 2 cut(s) 189, 249
BsePI GCGCGC 1 cut(s) 314
BseSI GKGCMC 1 cut(s) 120
BseXI GCAGC 3 cut(s) 19, 156, 276
BseYI CCCAGC 1 cut(s) 130
Bsh1236I CGCG 1 cut(s) 316
BshFI GGCC 2 cut(s) 200, 236
BshNI GGYRCC 1 cut(s) 105
BsiSI CCGG 4 cut(s) 109, 170, 237, 325
BsiWI CGTACG 1 cut(s) 332
BslI CCNNNNNNNGG 3 cut(s) 71, 102, 337
BsnI GGCC 2 cut(s) 200, 236
Bsp1286I GDGCHC 1 cut(s) 120
Bsp143I GATC 3 cut(s) 15, 164, 203
BspACI CCGC 4 cut(s) 77, 134, 300, 357
BspANI GGCC 2 cut(s) 200, 236
BspFNI CGCG 1 cut(s) 316
BspLI GGNNCC 2 cut(s) 107, 329
BspPI GGATC 1 cut(s) 159
BspT107I GGYRCC 1 cut(s) 105
BsrFI RCCGGY 2 cut(s) 108, 324
BsrI ACTGG 2 cut(s) 189, 249
BssAI RCCGGY 2 cut(s) 108, 324
BssECI CCNNGG 1 cut(s) 168
BssHII GCGCGC 1 cut(s) 314
BssMI GATC 3 cut(s) 15, 164, 203
BssNI GRCGYC 1 cut(s) 106
Bst4CI ACNGT 5 cut(s) 66, 74, 100, 337, 363
BstACI GRCGYC 1 cut(s) 106
BstC8I GCNNGC 4 cut(s) 110, 120, 316, 326
BstFNI CGCG 1 cut(s) 316
BstH2I RGCGCY 1 cut(s) 109
BstHHI GCGC 3 cut(s) 108, 316, 318
BstKTI GATC 3 cut(s) 18, 167, 206
BstMBI GATC 3 cut(s) 15, 164, 203
BstSCI CCNGG 1 cut(s) 168
BstSLI GKGCMC 1 cut(s) 120
BstUI CGCG 1 cut(s) 316
BstV1I GCAGC 3 cut(s) 19, 156, 276
BsuRI GGCC 2 cut(s) 200, 236
Cac8I GCNNGC 4 cut(s) 110, 120, 316, 326
CfoI GCGC 3 cut(s) 108, 316, 318
Cfr10I RCCGGY 2 cut(s) 108, 324
Csp6I GTAC 2 cut(s) 101, 333
CviJI RGCY 7 cut(s) 32, 49, 147, 200, 236, 289, 328
CviKI_1 RGCY 7 cut(s) 32, 49, 147, 200, 236, 289, 328
CviQI GTAC 2 cut(s) 101, 333
DinI GGCGCC 1 cut(s) 107
DpnI GATC 3 cut(s) 17, 166, 205
DpnII GATC 3 cut(s) 15, 164, 203
EaeI YGGCCR 1 cut(s) 234
EcoRI GAATTC 1 cut(s) 184
EgeI GGCGCC 1 cut(s) 107
EheI GGCGCC 1 cut(s) 107
Fnu4HI GCNGC 3 cut(s) 33, 145, 290
Fsp4HI GCNGC 3 cut(s) 33, 145, 290
FspBI CTAG 1 cut(s) 303
GlaI GCGC 3 cut(s) 107, 315, 317
GluI GCNGC 3 cut(s) 33, 145, 290
GsaI CCCAGC 1 cut(s) 134
GsuI CTGGAG 2 cut(s) 124, 314
HaeII RGCGCY 1 cut(s) 109
HaeIII GGCC 2 cut(s) 200, 236
HapII CCGG 4 cut(s) 109, 170, 237, 325
HhaI GCGC 3 cut(s) 108, 316, 318
Hin1I GRCGYC 1 cut(s) 106
Hin6I GCGC 3 cut(s) 106, 314, 316
HinP1I GCGC 3 cut(s) 106, 314, 316
HinfI GANTC 4 cut(s) 137, 175, 258, 296
HpaII CCGG 4 cut(s) 109, 170, 237, 325
HphI GGTGA 2 cut(s) 56, 198
Hpy188I TCNGA 1 cut(s) 20
Hpy99I CGWCG 2 cut(s) 184, 266
HpyAV CCTTC 2 cut(s) 95, 341
HpyCH4III ACNGT 5 cut(s) 66, 74, 100, 337, 363
HpyCH4IV ACGT 1 cut(s) 56
HpySE526I ACGT 1 cut(s) 56
Hsp92I GRCGYC 1 cut(s) 106
HspAI GCGC 3 cut(s) 106, 314, 316
KasI GGCGCC 1 cut(s) 105
KroI GCCGGC 2 cut(s) 108, 324
KroNI GCCGGC 2 cut(s) 110, 326
Kzo9I GATC 3 cut(s) 15, 164, 203
LmnI GCTCC 1 cut(s) 333
Lsp1109I GCAGC 3 cut(s) 19, 156, 276
MaeI CTAG 1 cut(s) 303
MaeII ACGT 1 cut(s) 56
MalI GATC 3 cut(s) 17, 166, 205
MboI GATC 3 cut(s) 15, 164, 203
MhlI GDGCHC 1 cut(s) 120
MluCI AATT 2 cut(s) 184, 248
Mly113I GGCGCC 1 cut(s) 106
MlyI GAGTC 4 cut(s) 131, 184, 252, 305
MnlI CCTC 6 cut(s) 20, 107, 133, 270, 304, 330
MreI CGCCGGCG 1 cut(s) 108
MroNI GCCGGC 2 cut(s) 108, 324
MspA1I CMGCKG 1 cut(s) 134
MspI CCGG 4 cut(s) 109, 170, 237, 325
MspR9I CCNGG 1 cut(s) 170
MvnI CGCG 1 cut(s) 316
NaeI GCCGGC 2 cut(s) 110, 326
NarI GGCGCC 1 cut(s) 106
NciI CCSGG 1 cut(s) 170
NdeII GATC 3 cut(s) 15, 164, 203
NgoMIV GCCGGC 2 cut(s) 108, 324
NlaIV GGNNCC 2 cut(s) 107, 329
PalAI GGCGCGCC 1 cut(s) 314
PauI GCGCGC 1 cut(s) 314
PcsI WCGNNNNNNNCGW 3 cut(s) 62, 109, 328
PdiI GCCGGC 2 cut(s) 110, 326
Pfl23II CGTACG 1 cut(s) 332
PkrI GCNGC 3 cut(s) 34, 146, 291
PleI GAGTC 4 cut(s) 131, 183, 252, 304
PluTI GGCGCC 1 cut(s) 109
PpsI GAGTC 4 cut(s) 131, 183, 252, 304
PspFI CCCAGC 1 cut(s) 130
PspLI CGTACG 1 cut(s) 332
PspN4I GGNNCC 2 cut(s) 107, 329
PteI GCGCGC 1 cut(s) 314
RsaI GTAC 2 cut(s) 102, 334
RsaNI GTAC 2 cut(s) 101, 333
SatI GCNGC 3 cut(s) 33, 145, 290
Sau3AI GATC 3 cut(s) 15, 164, 203
SchI GAGTC 4 cut(s) 131, 184, 252, 305
ScrFI CCNGG 1 cut(s) 170
SduI GDGCHC 1 cut(s) 120
SetI ASST 5 cut(s) 51, 59, 149, 281, 291
SfoI GGCGCC 1 cut(s) 107
SgrAI CRCCGGYG 1 cut(s) 108
SgsI GGCGCGCC 1 cut(s) 314
Sse9I AATT 2 cut(s) 184, 248
SsiI CCGC 4 cut(s) 77, 134, 300, 357
SspDI GGCGCC 1 cut(s) 105
SspMI CTAG 1 cut(s) 303
StyD4I CCNGG 1 cut(s) 168
TaaI ACNGT 5 cut(s) 66, 74, 100, 337, 363
TaiI ACGT 1 cut(s) 59
TaqI TCGA 2 cut(s) 163, 182
TasI AATT 2 cut(s) 184, 248
TseI GCWGC 3 cut(s) 32, 144, 289
TspGWI ACGGA 4 cut(s) 67, 78, 168, 320
XapI RAATTY 2 cut(s) 184, 248
XspI CTAG 1 cut(s) 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.