FvH4_2g04621

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000118
Physical Location & Seq
Reverse (-)
3548035 .. 3550395
2361 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g04621.t1

Sequence Viewer

Length: 636 bp
ATGTTTGCCTTGGTTAAGAAGAAGTCAAAAGACAGTGGTCGAGATTCATTTTCAGGATCATATTCTAGGCGTGGAGAGTCAAGACAGTCTGGTTCAGAAAGGGGCGTAAAACTTGATATTGTTGATTTCAATGGTGAAAACAATCTTGAGATTGCCTACCAAATGGAGGAAGAATATAAGAAGAGATCGTTCATGTCATTTTCAAACAAAAAGAAGACACTAGACAAATATTTTGGAGGATTCACCCCCGCATCTAGTGATTCAAATGAGAAAACTCATAGTGAGTCCTCATCTTCCAACAAGTTAGTGAGTTCTTCTGCTCTTAGGAGTGCACAAAGGGCTGCTGGTTCTGCCTCTAATACGAGGACTGAAATTAAATGCTGGAAATGTAGAGGCTTTGGACACTTGGCAGTACAATGCCCAAATCATTTAGTTGCTTTTGCAGACAACGAAACTCCTATTGCAACTGACAATGCTGAACAAAAGGCAAATAAAGTTGTTAAGTTGGAAGTAGAAAAAGAATCAGAGTTGGAAACCTTGGAGAGGAACGAAAAATCGGCACTTCTAGGCAGAAGAACCTATAGGCGGCATCTGGGCGGTCTAGGGCGGCCTTTAGATGGGTCTAGGCGCCGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

212

Amino Acids

23.58

Weight (kDa)

9.63

Isoelectric Point (pI)

59.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000118)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01361 FvH4_1g07161 FvH4_1g07431 FvH4_1g07821 FvH4_1g08223 FvH4_1g10041 FvH4_1g12132 FvH4_1g15053 FvH4_1g18161 FvH4_1g18400 FvH4_1g18931 FvH4_1g19242 FvH4_1g19461 FvH4_1g20550 FvH4_1g21381 FvH4_1g21542 FvH4_1g22102 FvH4_1g23991 FvH4_1g24542 FvH4_1g24951 FvH4_1g24960 FvH4_1g25272 FvH4_1g25552 FvH4_1g25771 FvH4_1g28771 FvH4_1g29201 FvH4_1g29611 FvH4_2g01181 FvH4_2g02491 FvH4_2g04621 FvH4_2g04631 FvH4_2g07460 FvH4_2g08540 FvH4_2g08550 FvH4_2g09292 FvH4_2g10501 FvH4_2g12101 FvH4_2g12220 FvH4_2g12551 FvH4_2g14071 FvH4_2g14241 FvH4_2g15041 FvH4_2g15311 FvH4_2g18971 FvH4_2g19220 FvH4_2g19260 FvH4_2g19611 FvH4_2g19652 FvH4_2g20211 FvH4_2g20231 FvH4_2g21541 FvH4_2g22380 FvH4_2g27712 FvH4_2g28171 FvH4_2g29879 FvH4_2g32391 FvH4_3g02171 FvH4_3g05531 FvH4_3g09750 FvH4_3g10310 FvH4_3g10460 FvH4_3g13172 FvH4_3g15232 FvH4_3g18481 FvH4_3g18621 FvH4_3g20504 FvH4_3g20812 FvH4_3g22320 FvH4_3g22930 FvH4_3g22940 FvH4_3g23752 FvH4_3g24791 FvH4_3g26411 FvH4_3g26432 FvH4_3g27201 FvH4_3g27862 FvH4_3g28871 FvH4_3g28954 FvH4_3g29131 FvH4_3g29832 FvH4_3g29922 FvH4_3g30190 FvH4_3g32231 FvH4_3g32250 FvH4_3g33460 FvH4_3g34670 FvH4_3g36982 FvH4_3g37001 FvH4_3g38252 FvH4_3g38772 FvH4_3g40141 FvH4_3g40181 FvH4_3g42521 FvH4_4g00090 FvH4_4g00290 FvH4_4g00301 FvH4_4g00530 FvH4_4g00823 FvH4_4g02300 FvH4_4g02450 FvH4_4g03360 FvH4_4g04481 FvH4_4g04761 FvH4_4g06301 FvH4_4g06630 FvH4_4g08312 FvH4_4g08552 FvH4_4g10053 FvH4_4g11971 FvH4_4g13211 FvH4_4g13511 FvH4_4g15351 FvH4_4g16360 FvH4_4g16601 FvH4_4g18462 FvH4_4g22911 FvH4_4g23221 FvH4_4g24301 FvH4_4g24721 FvH4_4g27905 FvH4_4g28971 FvH4_4g29540 FvH4_4g30720 FvH4_4g31521 FvH4_4g33371 FvH4_4g34111 FvH4_4g35740 FvH4_5g00131 FvH4_5g02530 FvH4_5g02550 FvH4_5g02560 FvH4_5g02580 FvH4_5g03783 FvH4_5g05681 FvH4_5g05681 FvH4_5g09371 FvH4_5g09381 FvH4_5g14611 FvH4_5g15341 FvH4_5g19801 FvH4_5g20110 FvH4_5g20911 FvH4_5g22230 FvH4_5g25751 FvH4_5g26070 FvH4_5g26471 FvH4_5g27072 FvH4_5g27471 FvH4_5g27471 FvH4_5g27998 FvH4_5g28291 FvH4_5g30951 FvH4_5g31082 FvH4_5g31890 FvH4_5g32251 FvH4_5g34112 FvH4_5g37184 FvH4_5g37993 FvH4_5g38271 FvH4_6g00153 FvH4_6g00640 FvH4_6g05921 FvH4_6g08591 FvH4_6g09511 FvH4_6g10331 FvH4_6g10401 FvH4_6g14161 FvH4_6g14171 FvH4_6g18481 FvH4_6g19721 FvH4_6g19980 FvH4_6g20104 FvH4_6g20112 FvH4_6g21261 FvH4_6g21651 FvH4_6g22051 FvH4_6g23141 FvH4_6g24822 FvH4_6g25082 FvH4_6g25391 FvH4_6g25560 FvH4_6g26350 FvH4_6g27031 FvH4_6g27810 FvH4_6g27971 FvH4_6g28331 FvH4_6g29391 FvH4_6g30781 FvH4_6g32221 FvH4_6g34680 FvH4_6g36181 FvH4_6g36551 FvH4_6g37491 FvH4_6g37663 FvH4_6g39590 FvH4_6g40582 FvH4_6g43843 FvH4_6g50551 FvH4_7g00240 FvH4_7g00731 FvH4_7g01031 FvH4_7g03301 FvH4_7g08180 FvH4_7g08180 FvH4_7g10631 FvH4_7g19710 FvH4_7g23892 FvH4_7g25280 FvH4_7g25551 FvH4_7g30121 FvH4_7g31931 FvH4_7g32672 FvH4_c21g00040 FvH4_c2g00053
prunus_persica Prupe.1G448800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322451 RchiOBHm_Chr5g0015171
rosa_laevigata RLG00000003077 RLG00000018186 RLG00000030343
rosa_multiflora Rmu_co8096726.1_g000001
rosa_roxburghii Rroxscaffold_157G00438380 Rroxscaffold_1G00001730 Rroxscaffold_3G00236310
rosa_rugosa Rorug02G0236500
rosa_samantha Rh4BG247300 Rh6BG286200 Rh6CG287300 Rh7DG257500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 627
AciI CCGC 4 cut(s) 249, 586, 597, 607
AclWI GGATC 1 cut(s) 64
AcyI GRCGYC 1 cut(s) 628
AfaI GTAC 1 cut(s) 414
AfiI CCNNNNNNNGG 4 cut(s) 166, 543, 585, 617
AgsI TTSAA 3 cut(s) 130, 204, 264
Alw21I GWGCWC 1 cut(s) 334
Alw44I GTGCAC 1 cut(s) 330
AlwI GGATC 1 cut(s) 64
AoxI GGCC 1 cut(s) 608
ApaLI GTGCAC 1 cut(s) 330
ApeKI GCWGC 1 cut(s) 341
ArsI GACNNNNNNTTYG 2 cut(s) 215, 247
AspLEI GCGC 1 cut(s) 630
AsuHPI GGTGA 2 cut(s) 146, 235
BaeGI GKGCMC 1 cut(s) 334
BanI GGYRCC 1 cut(s) 627
BbsI GAAGAC 1 cut(s) 221
Bbv12I GWGCWC 1 cut(s) 334
BbvI GCAGC 1 cut(s) 328
BccI CCATC 1 cut(s) 611
BfaI CTAG 6 cut(s) 66, 221, 255, 566, 602, 624
BfmI CTRYAG 1 cut(s) 580
BfoI RGCGCY 1 cut(s) 631
BisI GCNGC 3 cut(s) 342, 587, 608
BlsI GCNGC 3 cut(s) 343, 588, 609
BmiI GGNNCC 1 cut(s) 629
BmsI GCATC 2 cut(s) 260, 598
BoxI GACNNNNGTC 1 cut(s) 36
BpiI GAAGAC 1 cut(s) 221
BpuEI CTTGAG 1 cut(s) 167
BsaHI GRCGYC 1 cut(s) 628
BsaJI CCNNGG 2 cut(s) 9, 537
Bsc4I CCNNNNNNNGG 4 cut(s) 166, 543, 585, 617
BseDI CCNNGG 2 cut(s) 9, 537
BseLI CCNNNNNNNGG 4 cut(s) 166, 543, 585, 617
BseSI GKGCMC 1 cut(s) 334
BseXI GCAGC 1 cut(s) 328
BshFI GGCC 1 cut(s) 610
BshNI GGYRCC 1 cut(s) 627
BsiHKAI GWGCWC 1 cut(s) 334
BslI CCNNNNNNNGG 4 cut(s) 166, 543, 585, 617
BsnI GGCC 1 cut(s) 610
Bsp1286I GDGCHC 1 cut(s) 334
Bsp143I GATC 2 cut(s) 56, 185
BspACI CCGC 4 cut(s) 249, 586, 597, 607
BspANI GGCC 1 cut(s) 610
BspLI GGNNCC 1 cut(s) 629
BspPI GGATC 1 cut(s) 64
BspT107I GGYRCC 1 cut(s) 627
BssECI CCNNGG 2 cut(s) 9, 537
BssMI GATC 2 cut(s) 56, 185
BssNI GRCGYC 1 cut(s) 628
BssT1I CCWWGG 2 cut(s) 9, 537
Bst4CI ACNGT 2 cut(s) 35, 87
Bst6I CTCTTC 1 cut(s) 176
BstACI GRCGYC 1 cut(s) 628
BstDEI CTNAG 1 cut(s) 323
BstENI CCTNNNNNAGG 1 cut(s) 541
BstH2I RGCGCY 1 cut(s) 631
BstHHI GCGC 1 cut(s) 630
BstKTI GATC 2 cut(s) 59, 188
BstMBI GATC 2 cut(s) 56, 185
BstMWI GCNNNNNNNGC 2 cut(s) 338, 350
BstPAI GACNNNNGTC 1 cut(s) 36
BstSFI CTRYAG 1 cut(s) 580
BstSLI GKGCMC 1 cut(s) 334
BstV1I GCAGC 1 cut(s) 328
BstV2I GAAGAC 1 cut(s) 221
BsuRI GGCC 1 cut(s) 610
BtsIMutI CAGTG 1 cut(s) 40
CfoI GCGC 1 cut(s) 630
Csp6I GTAC 1 cut(s) 413
CviAII CATG 1 cut(s) 193
CviJI RGCY 3 cut(s) 341, 396, 610
CviKI_1 RGCY 3 cut(s) 341, 396, 610
CviQI GTAC 1 cut(s) 413
DdeI CTNAG 1 cut(s) 323
DinI GGCGCC 1 cut(s) 629
DpnI GATC 2 cut(s) 58, 187
DpnII GATC 2 cut(s) 56, 185
Eam1104I CTCTTC 1 cut(s) 176
EarI CTCTTC 1 cut(s) 176
Eco130I CCWWGG 2 cut(s) 9, 537
EcoNI CCTNNNNNAGG 1 cut(s) 541
EcoT14I CCWWGG 2 cut(s) 9, 537
EgeI GGCGCC 1 cut(s) 629
EheI GGCGCC 1 cut(s) 629
ErhI CCWWGG 2 cut(s) 9, 537
FaeI CATG 1 cut(s) 196
FaiI YATR 5 cut(s) 61, 177, 194, 279, 582
FatI CATG 1 cut(s) 192
FauI CCCGC 1 cut(s) 256
Fnu4HI GCNGC 3 cut(s) 342, 587, 608
Fsp4HI GCNGC 3 cut(s) 342, 587, 608
FspBI CTAG 6 cut(s) 66, 221, 255, 566, 602, 624
GlaI GCGC 1 cut(s) 629
GluI GCNGC 3 cut(s) 342, 587, 608
HaeII RGCGCY 1 cut(s) 631
HaeIII GGCC 1 cut(s) 610
HhaI GCGC 1 cut(s) 630
Hin1I GRCGYC 1 cut(s) 628
Hin1II CATG 1 cut(s) 196
Hin6I GCGC 1 cut(s) 628
HinP1I GCGC 1 cut(s) 628
HinfI GANTC 6 cut(s) 44, 77, 240, 260, 284, 521
HphI GGTGA 2 cut(s) 146, 235
Hpy166II GTNNAC 1 cut(s) 332
Hpy188I TCNGA 2 cut(s) 97, 526
Hpy188III TCNNGA 4 cut(s) 41, 54, 81, 146
Hpy8I GTNNAC 1 cut(s) 332
HpyCH4III ACNGT 2 cut(s) 35, 87
HpyCH4V TGCA 3 cut(s) 332, 443, 464
HpyF10VI GCNNNNNNNGC 2 cut(s) 338, 350
HpyF3I CTNAG 1 cut(s) 323
Hsp92I GRCGYC 1 cut(s) 628
Hsp92II CATG 1 cut(s) 196
HspAI GCGC 1 cut(s) 628
KasI GGCGCC 1 cut(s) 627
Kzo9I GATC 2 cut(s) 56, 185
LpnPI CCDG 5 cut(s) 39, 75, 330, 367, 578
Lsp1109I GCAGC 1 cut(s) 328
LweI GCATC 2 cut(s) 260, 598
MaeI CTAG 6 cut(s) 66, 221, 255, 566, 602, 624
MalI GATC 2 cut(s) 58, 187
MboI GATC 2 cut(s) 56, 185
MboII GAAGA 7 cut(s) 31, 182, 193, 226, 285, 306, 585
MhlI GDGCHC 1 cut(s) 334
MluCI AATT 1 cut(s) 372
Mly113I GGCGCC 1 cut(s) 628
MlyI GAGTC 2 cut(s) 86, 293
MmeI TCCRAC 3 cut(s) 321, 486, 510
MnlI CCTC 7 cut(s) 160, 230, 298, 357, 364, 386, 537
MseI TTAA 3 cut(s) 15, 375, 501
MwoI GCNNNNNNNGC 2 cut(s) 338, 350
NarI GGCGCC 1 cut(s) 628
NdeII GATC 2 cut(s) 56, 185
NlaIII CATG 1 cut(s) 196
NlaIV GGNNCC 1 cut(s) 629
PfeI GAWTC 4 cut(s) 44, 240, 260, 521
PkrI GCNGC 3 cut(s) 343, 588, 609
PleI GAGTC 2 cut(s) 85, 292
PluTI GGCGCC 1 cut(s) 631
PpsI GAGTC 2 cut(s) 85, 292
PshAI GACNNNNGTC 1 cut(s) 36
PspN4I GGNNCC 1 cut(s) 629
RsaI GTAC 1 cut(s) 414
RsaNI GTAC 1 cut(s) 413
SaqAI TTAA 3 cut(s) 15, 375, 501
SatI GCNGC 3 cut(s) 342, 587, 608
Sau3AI GATC 2 cut(s) 56, 185
SchI GAGTC 2 cut(s) 86, 293
SduI GDGCHC 1 cut(s) 334
SetI ASST 2 cut(s) 539, 581
SfaNI GCATC 2 cut(s) 260, 598
SfcI CTRYAG 1 cut(s) 580
SfoI GGCGCC 1 cut(s) 629
SmlI CTYRAG 1 cut(s) 146
SmoI CTYRAG 1 cut(s) 146
Sse9I AATT 1 cut(s) 372
SsiI CCGC 4 cut(s) 249, 586, 597, 607
SspDI GGCGCC 1 cut(s) 627
SspI AATATT 1 cut(s) 230
SspMI CTAG 6 cut(s) 66, 221, 255, 566, 602, 624
StyI CCWWGG 2 cut(s) 9, 537
TaaI ACNGT 2 cut(s) 35, 87
TaqI TCGA 1 cut(s) 40
TasI AATT 1 cut(s) 372
TatI WGTACW 1 cut(s) 412
TauI GCSGC 2 cut(s) 589, 610
TfiI GAWTC 4 cut(s) 44, 240, 260, 521
Tru1I TTAA 3 cut(s) 15, 375, 501
Tru9I TTAA 3 cut(s) 15, 375, 501
TscAI CASTG 1 cut(s) 40
TseI GCWGC 1 cut(s) 341
TspDTI ATGAA 2 cut(s) 36, 181
TspRI CASTG 1 cut(s) 40
VneI GTGCAC 1 cut(s) 330
XagI CCTNNNNNAGG 1 cut(s) 541
XspI CTAG 6 cut(s) 66, 221, 255, 566, 602, 624
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.