FvH4_3g26432

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000118
Physical Location & Seq
Forward (+)
19505819 .. 19506653
835 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g26432.t1

Sequence Viewer

Length: 318 bp
ATGTTACTTTGCGATCCCGCTTTGGTTCTGGATCGTGGAGCTTGGGGTGCCCAAAACCATTTGGGCTTGGATCCTTTTTGGGCTCGGGCTGAAAGCTTTAGGAGTTTTCCCCTAGGTTTGGGCTCTCAGGCCGGATTAAAGGCGGACGTCTACACCGGCCTTAAAGTGTGGACGGCTCCGACGACAGCACGCCTCCACCCAAGCGGACACCAAAGACATCCCCGATCACTTTCTCTTGCCGGCGAGATCGATTTGAAGGTGGAGGCGCACCGTCGTCGGAGTCGTCCGATGGAGAACGGAGGGACATCCGCATTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

106

Amino Acids

11.49

Weight (kDa)

10.0

Isoelectric Point (pI)

36.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000118)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01361 FvH4_1g07161 FvH4_1g07431 FvH4_1g07821 FvH4_1g08223 FvH4_1g10041 FvH4_1g12132 FvH4_1g15053 FvH4_1g18161 FvH4_1g18400 FvH4_1g18931 FvH4_1g19242 FvH4_1g19461 FvH4_1g20550 FvH4_1g21381 FvH4_1g21542 FvH4_1g22102 FvH4_1g23991 FvH4_1g24542 FvH4_1g24951 FvH4_1g24960 FvH4_1g25272 FvH4_1g25552 FvH4_1g25771 FvH4_1g28771 FvH4_1g29201 FvH4_1g29611 FvH4_2g01181 FvH4_2g02491 FvH4_2g04621 FvH4_2g04631 FvH4_2g07460 FvH4_2g08540 FvH4_2g08550 FvH4_2g09292 FvH4_2g10501 FvH4_2g12101 FvH4_2g12220 FvH4_2g12551 FvH4_2g14071 FvH4_2g14241 FvH4_2g15041 FvH4_2g15311 FvH4_2g18971 FvH4_2g19220 FvH4_2g19260 FvH4_2g19611 FvH4_2g19652 FvH4_2g20211 FvH4_2g20231 FvH4_2g21541 FvH4_2g22380 FvH4_2g27712 FvH4_2g28171 FvH4_2g29879 FvH4_2g32391 FvH4_3g02171 FvH4_3g05531 FvH4_3g09750 FvH4_3g10310 FvH4_3g10460 FvH4_3g13172 FvH4_3g15232 FvH4_3g18481 FvH4_3g18621 FvH4_3g20504 FvH4_3g20812 FvH4_3g22320 FvH4_3g22930 FvH4_3g22940 FvH4_3g23752 FvH4_3g24791 FvH4_3g26411 FvH4_3g26432 FvH4_3g27201 FvH4_3g27862 FvH4_3g28871 FvH4_3g28954 FvH4_3g29131 FvH4_3g29832 FvH4_3g29922 FvH4_3g30190 FvH4_3g32231 FvH4_3g32250 FvH4_3g33460 FvH4_3g34670 FvH4_3g36982 FvH4_3g37001 FvH4_3g38252 FvH4_3g38772 FvH4_3g40141 FvH4_3g40181 FvH4_3g42521 FvH4_4g00090 FvH4_4g00290 FvH4_4g00301 FvH4_4g00530 FvH4_4g00823 FvH4_4g02300 FvH4_4g02450 FvH4_4g03360 FvH4_4g04481 FvH4_4g04761 FvH4_4g06301 FvH4_4g06630 FvH4_4g08312 FvH4_4g08552 FvH4_4g10053 FvH4_4g11971 FvH4_4g13211 FvH4_4g13511 FvH4_4g15351 FvH4_4g16360 FvH4_4g16601 FvH4_4g18462 FvH4_4g22911 FvH4_4g23221 FvH4_4g24301 FvH4_4g24721 FvH4_4g27905 FvH4_4g28971 FvH4_4g29540 FvH4_4g30720 FvH4_4g31521 FvH4_4g33371 FvH4_4g34111 FvH4_4g35740 FvH4_5g00131 FvH4_5g02530 FvH4_5g02550 FvH4_5g02560 FvH4_5g02580 FvH4_5g03783 FvH4_5g05681 FvH4_5g05681 FvH4_5g09371 FvH4_5g09381 FvH4_5g14611 FvH4_5g15341 FvH4_5g19801 FvH4_5g20110 FvH4_5g20911 FvH4_5g22230 FvH4_5g25751 FvH4_5g26070 FvH4_5g26471 FvH4_5g27072 FvH4_5g27471 FvH4_5g27471 FvH4_5g27998 FvH4_5g28291 FvH4_5g30951 FvH4_5g31082 FvH4_5g31890 FvH4_5g32251 FvH4_5g34112 FvH4_5g37184 FvH4_5g37993 FvH4_5g38271 FvH4_6g00153 FvH4_6g00640 FvH4_6g05921 FvH4_6g08591 FvH4_6g09511 FvH4_6g10331 FvH4_6g10401 FvH4_6g14161 FvH4_6g14171 FvH4_6g18481 FvH4_6g19721 FvH4_6g19980 FvH4_6g20104 FvH4_6g20112 FvH4_6g21261 FvH4_6g21651 FvH4_6g22051 FvH4_6g23141 FvH4_6g24822 FvH4_6g25082 FvH4_6g25391 FvH4_6g25560 FvH4_6g26350 FvH4_6g27031 FvH4_6g27810 FvH4_6g27971 FvH4_6g28331 FvH4_6g29391 FvH4_6g30781 FvH4_6g32221 FvH4_6g34680 FvH4_6g36181 FvH4_6g36551 FvH4_6g37491 FvH4_6g37663 FvH4_6g39590 FvH4_6g40582 FvH4_6g43843 FvH4_6g50551 FvH4_7g00240 FvH4_7g00731 FvH4_7g01031 FvH4_7g03301 FvH4_7g08180 FvH4_7g08180 FvH4_7g10631 FvH4_7g19710 FvH4_7g23892 FvH4_7g25280 FvH4_7g25551 FvH4_7g30121 FvH4_7g31931 FvH4_7g32672 FvH4_c21g00040 FvH4_c2g00053
prunus_persica Prupe.1G448800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322451 RchiOBHm_Chr5g0015171
rosa_laevigata RLG00000003077 RLG00000018186 RLG00000030343
rosa_multiflora Rmu_co8096726.1_g000001
rosa_roxburghii Rroxscaffold_157G00438380 Rroxscaffold_1G00001730 Rroxscaffold_3G00236310
rosa_rugosa Rorug02G0236500
rosa_samantha Rh4BG247300 Rh6BG286200 Rh6CG287300 Rh7DG257500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 150
AccB1I GGYRCC 1 cut(s) 47
AccI GTMKAC 1 cut(s) 150
AciI CCGC 4 cut(s) 18, 143, 204, 309
AclWI GGATC 4 cut(s) 8, 39, 65, 78
AcyI GRCGYC 1 cut(s) 147
AfiI CCNNNNNNNGG 1 cut(s) 118
AgsI TTSAA 1 cut(s) 256
AluBI AGCT 2 cut(s) 41, 96
AluI AGCT 2 cut(s) 41, 96
AlwI GGATC 4 cut(s) 8, 39, 65, 78
Ama87I CYCGRG 1 cut(s) 84
AoxI GGCC 2 cut(s) 129, 157
AspA2I CCTAGG 1 cut(s) 112
AspLEI GCGC 1 cut(s) 268
AvaI CYCGRG 1 cut(s) 84
AvrII CCTAGG 1 cut(s) 112
BaeGI GKGCMC 1 cut(s) 52
BamHI GGATCC 1 cut(s) 70
BanI GGYRCC 1 cut(s) 47
BanII GRGCYC 2 cut(s) 85, 125
BccI CCATC 1 cut(s) 283
BceAI ACGGC 1 cut(s) 189
BcgI CGANNNNNNTGC 2 cut(s) 257, 291
BfaI CTAG 1 cut(s) 113
BlnI CCTAGG 1 cut(s) 112
BmeT110I CYCGRG 1 cut(s) 84
BmiI GGNNCC 3 cut(s) 49, 72, 177
Bsa29I ATCGAT 1 cut(s) 249
BsaHI GRCGYC 1 cut(s) 147
BsaJI CCNNGG 1 cut(s) 112
Bsc4I CCNNNNNNNGG 1 cut(s) 118
Bse118I RCCGGY 2 cut(s) 155, 239
BseCI ATCGAT 1 cut(s) 249
BseDI CCNNGG 1 cut(s) 112
BseGI GGATG 2 cut(s) 217, 305
BseLI CCNNNNNNNGG 1 cut(s) 118
BseMII CTCAG 1 cut(s) 140
BseSI GKGCMC 1 cut(s) 52
BshFI GGCC 2 cut(s) 131, 159
BshNI GGYRCC 1 cut(s) 47
BshVI ATCGAT 1 cut(s) 249
BsiHKCI CYCGRG 1 cut(s) 84
BsiSI CCGG 3 cut(s) 132, 156, 240
BslI CCNNNNNNNGG 1 cut(s) 118
BsnI GGCC 2 cut(s) 131, 159
BsoBI CYCGRG 1 cut(s) 84
Bsp1286I GDGCHC 3 cut(s) 52, 85, 125
Bsp143I GATC 5 cut(s) 13, 31, 70, 224, 246
BspACI CCGC 4 cut(s) 18, 143, 204, 309
BspANI GGCC 2 cut(s) 131, 159
BspCNI CTCAG 1 cut(s) 139
BspDI ATCGAT 1 cut(s) 249
BspLI GGNNCC 3 cut(s) 49, 72, 177
BspPI GGATC 4 cut(s) 8, 39, 65, 78
BspT107I GGYRCC 1 cut(s) 47
BsrFI RCCGGY 2 cut(s) 155, 239
BssAI RCCGGY 2 cut(s) 155, 239
BssECI CCNNGG 1 cut(s) 112
BssMI GATC 5 cut(s) 13, 31, 70, 224, 246
BssNI GRCGYC 1 cut(s) 147
BssT1I CCWWGG 1 cut(s) 112
Bst4CI ACNGT 1 cut(s) 272
BstACI GRCGYC 1 cut(s) 147
BstC8I GCNNGC 2 cut(s) 190, 241
BstDEI CTNAG 1 cut(s) 126
BstF5I GGATG 2 cut(s) 217, 305
BstHHI GCGC 1 cut(s) 268
BstKTI GATC 5 cut(s) 16, 34, 73, 227, 249
BstMBI GATC 5 cut(s) 13, 31, 70, 224, 246
BstMWI GCNNNNNNNGC 1 cut(s) 47
BstSLI GKGCMC 1 cut(s) 52
BstX2I RGATCY 1 cut(s) 70
BstYI RGATCY 1 cut(s) 70
Bsu15I ATCGAT 1 cut(s) 249
BsuRI GGCC 2 cut(s) 131, 159
BsuTUI ATCGAT 1 cut(s) 249
BtsCI GGATG 2 cut(s) 217, 305
Cac8I GCNNGC 2 cut(s) 190, 241
CfoI GCGC 1 cut(s) 268
Cfr10I RCCGGY 2 cut(s) 155, 239
ClaI ATCGAT 1 cut(s) 249
CviJI RGCY 9 cut(s) 41, 66, 83, 89, 96, 123, 131, 159, 176
CviKI_1 RGCY 9 cut(s) 41, 66, 83, 89, 96, 123, 131, 159, 176
DdeI CTNAG 1 cut(s) 126
DpnI GATC 5 cut(s) 15, 33, 72, 226, 248
DpnII GATC 5 cut(s) 13, 31, 70, 224, 246
EciI GGCGGA 1 cut(s) 158
Eco130I CCWWGG 1 cut(s) 112
Eco24I GRGCYC 2 cut(s) 85, 125
Eco88I CYCGRG 1 cut(s) 84
EcoT14I CCWWGG 1 cut(s) 112
EcoT38I GRGCYC 2 cut(s) 85, 125
ErhI CCWWGG 1 cut(s) 112
FauI CCCGC 1 cut(s) 25
FblI GTMKAC 1 cut(s) 150
FokI GGATG 2 cut(s) 204, 292
FriOI GRGCYC 2 cut(s) 85, 125
FspBI CTAG 1 cut(s) 113
GlaI GCGC 1 cut(s) 267
HaeIII GGCC 2 cut(s) 131, 159
HapII CCGG 3 cut(s) 132, 156, 240
HhaI GCGC 1 cut(s) 268
Hin1I GRCGYC 1 cut(s) 147
Hin6I GCGC 1 cut(s) 266
HinP1I GCGC 1 cut(s) 266
HindIII AAGCTT 1 cut(s) 94
HinfI GANTC 1 cut(s) 280
HpaII CCGG 3 cut(s) 132, 156, 240
Hpy166II GTNNAC 2 cut(s) 151, 171
Hpy188I TCNGA 3 cut(s) 180, 279, 288
Hpy188III TCNNGA 1 cut(s) 29
Hpy8I GTNNAC 2 cut(s) 151, 171
Hpy99I CGWCG 3 cut(s) 184, 276, 279
HpyAV CCTTC 1 cut(s) 250
HpyCH4III ACNGT 1 cut(s) 272
HpyCH4IV ACGT 1 cut(s) 147
HpyF10VI GCNNNNNNNGC 1 cut(s) 47
HpyF3I CTNAG 1 cut(s) 126
HpySE526I ACGT 1 cut(s) 147
Hsp92I GRCGYC 1 cut(s) 147
HspAI GCGC 1 cut(s) 266
KroI GCCGGC 1 cut(s) 239
KroNI GCCGGC 1 cut(s) 241
Kzo9I GATC 5 cut(s) 13, 31, 70, 224, 246
LmnI GCTCC 2 cut(s) 38, 181
LpnPI CCDG 5 cut(s) 14, 113, 145, 169, 253
MaeI CTAG 1 cut(s) 113
MaeII ACGT 1 cut(s) 147
MaeIII GTNAC 1 cut(s) 3
MalI GATC 5 cut(s) 15, 33, 72, 226, 248
MboI GATC 5 cut(s) 13, 31, 70, 224, 246
MflI RGATCY 1 cut(s) 70
MhlI GDGCHC 3 cut(s) 52, 85, 125
MlyI GAGTC 1 cut(s) 289
MmeI TCCRAC 2 cut(s) 203, 257
MnlI CCTC 3 cut(s) 203, 256, 293
MroNI GCCGGC 1 cut(s) 239
MseI TTAA 3 cut(s) 137, 162, 316
MspI CCGG 3 cut(s) 132, 156, 240
MwoI GCNNNNNNNGC 1 cut(s) 47
NaeI GCCGGC 1 cut(s) 241
NdeII GATC 5 cut(s) 13, 31, 70, 224, 246
NgoMIV GCCGGC 1 cut(s) 239
NlaIV GGNNCC 3 cut(s) 49, 72, 177
PcsI WCGNNNNNNNCGW 2 cut(s) 179, 280
PdiI GCCGGC 1 cut(s) 241
PleI GAGTC 1 cut(s) 288
PpsI GAGTC 1 cut(s) 288
PspN4I GGNNCC 3 cut(s) 49, 72, 177
PsuI RGATCY 1 cut(s) 70
SaqAI TTAA 3 cut(s) 137, 162, 316
Sau3AI GATC 5 cut(s) 13, 31, 70, 224, 246
SchI GAGTC 1 cut(s) 289
SduI GDGCHC 3 cut(s) 52, 85, 125
SetI ASST 5 cut(s) 43, 98, 118, 150, 261
SsiI CCGC 4 cut(s) 18, 143, 204, 309
SspMI CTAG 1 cut(s) 113
StyI CCWWGG 1 cut(s) 112
TaaI ACNGT 1 cut(s) 272
TaiI ACGT 1 cut(s) 150
TaqI TCGA 1 cut(s) 249
Tru1I TTAA 3 cut(s) 137, 162, 316
Tru9I TTAA 3 cut(s) 137, 162, 316
TspGWI ACGGA 1 cut(s) 312
XmaJI CCTAGG 1 cut(s) 112
XmiI GTMKAC 1 cut(s) 150
XspI CTAG 1 cut(s) 113
ZraI GACGTC 1 cut(s) 148
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.