FvH4_5g19801

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000118
Physical Location & Seq
Forward (+)
11648612 .. 11648926
315 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g19801.t1

Sequence Viewer

Length: 315 bp
ATGCAGATTTCAGTCCGTTCGCCACCGTACGGCGCCGTGCGAGGGCGCGCCTCCACCCCAGCGGACTTCAGCAGCTTCCCCGACCACTTTCCATCCCCGGCGAGTCCGCTGAATTCCAGTTTTCCGGCGAGATCGACTTTATTTGAAGTTTTGGGTGATCTCGTCGGAAAACTGGAAAAGAACGGACTCGCCGGGGATGGAAAGTGGTTGGCGAAGCTGCTGGAGTTCGCTGGGGTGAAGGCGGGCCCTCGCGCGGCGCCGTACGGTGGCGAACGGACGGAATTCCGCACCGTAAAACGGTGCGGACGTCCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

105

Amino Acids

11.11

Weight (kDa)

10.0

Isoelectric Point (pI)

45.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000118)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01361 FvH4_1g07161 FvH4_1g07431 FvH4_1g07821 FvH4_1g08223 FvH4_1g10041 FvH4_1g12132 FvH4_1g15053 FvH4_1g18161 FvH4_1g18400 FvH4_1g18931 FvH4_1g19242 FvH4_1g19461 FvH4_1g20550 FvH4_1g21381 FvH4_1g21542 FvH4_1g22102 FvH4_1g23991 FvH4_1g24542 FvH4_1g24951 FvH4_1g24960 FvH4_1g25272 FvH4_1g25552 FvH4_1g25771 FvH4_1g28771 FvH4_1g29201 FvH4_1g29611 FvH4_2g01181 FvH4_2g02491 FvH4_2g04621 FvH4_2g04631 FvH4_2g07460 FvH4_2g08540 FvH4_2g08550 FvH4_2g09292 FvH4_2g10501 FvH4_2g12101 FvH4_2g12220 FvH4_2g12551 FvH4_2g14071 FvH4_2g14241 FvH4_2g15041 FvH4_2g15311 FvH4_2g18971 FvH4_2g19220 FvH4_2g19260 FvH4_2g19611 FvH4_2g19652 FvH4_2g20211 FvH4_2g20231 FvH4_2g21541 FvH4_2g22380 FvH4_2g27712 FvH4_2g28171 FvH4_2g29879 FvH4_2g32391 FvH4_3g02171 FvH4_3g05531 FvH4_3g09750 FvH4_3g10310 FvH4_3g10460 FvH4_3g13172 FvH4_3g15232 FvH4_3g18481 FvH4_3g18621 FvH4_3g20504 FvH4_3g20812 FvH4_3g22320 FvH4_3g22930 FvH4_3g22940 FvH4_3g23752 FvH4_3g24791 FvH4_3g26411 FvH4_3g26432 FvH4_3g27201 FvH4_3g27862 FvH4_3g28871 FvH4_3g28954 FvH4_3g29131 FvH4_3g29832 FvH4_3g29922 FvH4_3g30190 FvH4_3g32231 FvH4_3g32250 FvH4_3g33460 FvH4_3g34670 FvH4_3g36982 FvH4_3g37001 FvH4_3g38252 FvH4_3g38772 FvH4_3g40141 FvH4_3g40181 FvH4_3g42521 FvH4_4g00090 FvH4_4g00290 FvH4_4g00301 FvH4_4g00530 FvH4_4g00823 FvH4_4g02300 FvH4_4g02450 FvH4_4g03360 FvH4_4g04481 FvH4_4g04761 FvH4_4g06301 FvH4_4g06630 FvH4_4g08312 FvH4_4g08552 FvH4_4g10053 FvH4_4g11971 FvH4_4g13211 FvH4_4g13511 FvH4_4g15351 FvH4_4g16360 FvH4_4g16601 FvH4_4g18462 FvH4_4g22911 FvH4_4g23221 FvH4_4g24301 FvH4_4g24721 FvH4_4g27905 FvH4_4g28971 FvH4_4g29540 FvH4_4g30720 FvH4_4g31521 FvH4_4g33371 FvH4_4g34111 FvH4_4g35740 FvH4_5g00131 FvH4_5g02530 FvH4_5g02550 FvH4_5g02560 FvH4_5g02580 FvH4_5g03783 FvH4_5g05681 FvH4_5g05681 FvH4_5g09371 FvH4_5g09381 FvH4_5g14611 FvH4_5g15341 FvH4_5g19801 FvH4_5g20110 FvH4_5g20911 FvH4_5g22230 FvH4_5g25751 FvH4_5g26070 FvH4_5g26471 FvH4_5g27072 FvH4_5g27471 FvH4_5g27471 FvH4_5g27998 FvH4_5g28291 FvH4_5g30951 FvH4_5g31082 FvH4_5g31890 FvH4_5g32251 FvH4_5g34112 FvH4_5g37184 FvH4_5g37993 FvH4_5g38271 FvH4_6g00153 FvH4_6g00640 FvH4_6g05921 FvH4_6g08591 FvH4_6g09511 FvH4_6g10331 FvH4_6g10401 FvH4_6g14161 FvH4_6g14171 FvH4_6g18481 FvH4_6g19721 FvH4_6g19980 FvH4_6g20104 FvH4_6g20112 FvH4_6g21261 FvH4_6g21651 FvH4_6g22051 FvH4_6g23141 FvH4_6g24822 FvH4_6g25082 FvH4_6g25391 FvH4_6g25560 FvH4_6g26350 FvH4_6g27031 FvH4_6g27810 FvH4_6g27971 FvH4_6g28331 FvH4_6g29391 FvH4_6g30781 FvH4_6g32221 FvH4_6g34680 FvH4_6g36181 FvH4_6g36551 FvH4_6g37491 FvH4_6g37663 FvH4_6g39590 FvH4_6g40582 FvH4_6g43843 FvH4_6g50551 FvH4_7g00240 FvH4_7g00731 FvH4_7g01031 FvH4_7g03301 FvH4_7g08180 FvH4_7g08180 FvH4_7g10631 FvH4_7g19710 FvH4_7g23892 FvH4_7g25280 FvH4_7g25551 FvH4_7g30121 FvH4_7g31931 FvH4_7g32672 FvH4_c21g00040 FvH4_c2g00053
prunus_persica Prupe.1G448800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322451 RchiOBHm_Chr5g0015171
rosa_laevigata RLG00000003077 RLG00000018186 RLG00000030343
rosa_multiflora Rmu_co8096726.1_g000001
rosa_roxburghii Rroxscaffold_157G00438380 Rroxscaffold_1G00001730 Rroxscaffold_3G00236310
rosa_rugosa Rorug02G0236500
rosa_samantha Rh4BG247300 Rh6BG286200 Rh6CG287300 Rh7DG257500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 310
AccB1I GGYRCC 2 cut(s) 32, 256
AccII CGCG 3 cut(s) 48, 252, 254
AciI CCGC 6 cut(s) 62, 107, 242, 254, 286, 303
AcsI RAATTY 2 cut(s) 112, 281
AcuI CTGAAG 1 cut(s) 52
AcyI GRCGYC 3 cut(s) 33, 257, 307
AfaI GTAC 2 cut(s) 29, 263
AfiI CCNNNNNNNGG 5 cut(s) 29, 42, 253, 266, 297
AgsI TTSAA 1 cut(s) 146
AluBI AGCT 2 cut(s) 75, 217
AluI AGCT 2 cut(s) 75, 217
AoxI GGCC 1 cut(s) 244
ApaI GGGCCC 1 cut(s) 248
ApeKI GCWGC 2 cut(s) 72, 217
ApoI RAATTY 2 cut(s) 112, 281
AscI GGCGCGCC 1 cut(s) 46
AspLEI GCGC 5 cut(s) 35, 48, 50, 254, 259
AspS9I GGNCC 2 cut(s) 244, 245
AsuC2I CCSGG 2 cut(s) 98, 193
AsuHPI GGTGA 2 cut(s) 167, 247
BaeGI GKGCMC 1 cut(s) 248
BanI GGYRCC 2 cut(s) 32, 256
BanII GRGCYC 1 cut(s) 248
BbvI GCAGC 2 cut(s) 84, 204
BccI CCATC 2 cut(s) 100, 191
BceAI ACGGC 3 cut(s) 20, 46, 244
BcnI CCSGG 2 cut(s) 98, 193
BfoI RGCGCY 2 cut(s) 36, 260
BisI GCNGC 3 cut(s) 73, 218, 255
BlsI GCNGC 3 cut(s) 74, 219, 256
Bme1390I CCNGG 2 cut(s) 98, 193
BmgT120I GGNCC 2 cut(s) 244, 245
BmiI GGNNCC 3 cut(s) 34, 246, 258
BmrFI CCNGG 2 cut(s) 98, 193
BpmI CTGGAG 1 cut(s) 242
BpuMI CCSGG 2 cut(s) 98, 193
BsaHI GRCGYC 3 cut(s) 33, 257, 307
BsaJI CCNNGG 2 cut(s) 96, 192
Bsc4I CCNNNNNNNGG 5 cut(s) 29, 42, 253, 266, 297
Bse1I ACTGG 2 cut(s) 117, 177
BseDI CCNNGG 2 cut(s) 96, 192
BseGI GGATG 2 cut(s) 92, 202
BseLI CCNNNNNNNGG 5 cut(s) 29, 42, 253, 266, 297
BseNI ACTGG 2 cut(s) 117, 177
BsePI GCGCGC 1 cut(s) 46
BseSI GKGCMC 1 cut(s) 248
BseXI GCAGC 2 cut(s) 84, 204
BseYI CCCAGC 2 cut(s) 58, 230
Bsh1236I CGCG 3 cut(s) 48, 252, 254
BshFI GGCC 1 cut(s) 246
BshNI GGYRCC 2 cut(s) 32, 256
BsiSI CCGG 3 cut(s) 98, 125, 192
BsiWI CGTACG 2 cut(s) 27, 261
BslI CCNNNNNNNGG 5 cut(s) 29, 42, 253, 266, 297
BsnI GGCC 1 cut(s) 246
Bsp120I GGGCCC 1 cut(s) 244
Bsp1286I GDGCHC 1 cut(s) 248
Bsp143I GATC 2 cut(s) 131, 157
BspACI CCGC 6 cut(s) 62, 107, 242, 254, 286, 303
BspANI GGCC 1 cut(s) 246
BspFNI CGCG 3 cut(s) 48, 252, 254
BspLI GGNNCC 3 cut(s) 34, 246, 258
BspT107I GGYRCC 2 cut(s) 32, 256
BsrI ACTGG 2 cut(s) 117, 177
BssECI CCNNGG 2 cut(s) 96, 192
BssHII GCGCGC 1 cut(s) 46
BssMI GATC 2 cut(s) 131, 157
BssNI GRCGYC 3 cut(s) 33, 257, 307
Bst4CI ACNGT 4 cut(s) 27, 266, 292, 300
BstACI GRCGYC 3 cut(s) 33, 257, 307
BstC8I GCNNGC 2 cut(s) 48, 244
BstF5I GGATG 2 cut(s) 92, 202
BstFNI CGCG 3 cut(s) 48, 252, 254
BstH2I RGCGCY 2 cut(s) 36, 260
BstHHI GCGC 5 cut(s) 35, 48, 50, 254, 259
BstKTI GATC 2 cut(s) 134, 160
BstMBI GATC 2 cut(s) 131, 157
BstSCI CCNGG 2 cut(s) 96, 191
BstSLI GKGCMC 1 cut(s) 248
BstUI CGCG 3 cut(s) 48, 252, 254
BstV1I GCAGC 2 cut(s) 84, 204
BsuRI GGCC 1 cut(s) 246
BtsCI GGATG 2 cut(s) 92, 202
Cac8I GCNNGC 2 cut(s) 48, 244
CfoI GCGC 5 cut(s) 35, 48, 50, 254, 259
Cfr13I GGNCC 2 cut(s) 244, 245
Csp6I GTAC 2 cut(s) 28, 262
CviJI RGCY 3 cut(s) 75, 217, 246
CviKI_1 RGCY 3 cut(s) 75, 217, 246
CviQI GTAC 2 cut(s) 28, 262
DinI GGCGCC 2 cut(s) 34, 258
DpnI GATC 2 cut(s) 133, 159
DpnII GATC 2 cut(s) 131, 157
Eco24I GRGCYC 1 cut(s) 248
Eco57I CTGAAG 1 cut(s) 52
EcoO109I RGGNCCY 1 cut(s) 245
EcoRI GAATTC 2 cut(s) 112, 281
EcoT38I GRGCYC 1 cut(s) 248
EgeI GGCGCC 2 cut(s) 34, 258
EheI GGCGCC 2 cut(s) 34, 258
FauI CCCGC 1 cut(s) 235
Fnu4HI GCNGC 3 cut(s) 73, 218, 255
FokI GGATG 2 cut(s) 79, 209
FriOI GRGCYC 1 cut(s) 248
Fsp4HI GCNGC 3 cut(s) 73, 218, 255
GlaI GCGC 5 cut(s) 34, 47, 49, 253, 258
GluI GCNGC 3 cut(s) 73, 218, 255
GsaI CCCAGC 2 cut(s) 62, 234
GsuI CTGGAG 1 cut(s) 242
HaeII RGCGCY 2 cut(s) 36, 260
HaeIII GGCC 1 cut(s) 246
HapII CCGG 3 cut(s) 98, 125, 192
HhaI GCGC 5 cut(s) 35, 48, 50, 254, 259
Hin1I GRCGYC 3 cut(s) 33, 257, 307
Hin6I GCGC 5 cut(s) 33, 46, 48, 252, 257
HinP1I GCGC 5 cut(s) 33, 46, 48, 252, 257
HinfI GANTC 2 cut(s) 103, 186
HpaII CCGG 3 cut(s) 98, 125, 192
HphI GGTGA 2 cut(s) 167, 247
Hpy188I TCNGA 1 cut(s) 167
Hpy99I CGWCG 1 cut(s) 167
HpyAV CCTTC 1 cut(s) 232
HpyCH4III ACNGT 4 cut(s) 27, 266, 292, 300
HpyCH4IV ACGT 1 cut(s) 307
HpyCH4V TGCA 1 cut(s) 4
HpySE526I ACGT 1 cut(s) 307
Hsp92I GRCGYC 3 cut(s) 33, 257, 307
HspAI GCGC 5 cut(s) 33, 46, 48, 252, 257
KasI GGCGCC 2 cut(s) 32, 256
Kzo9I GATC 2 cut(s) 131, 157
LpnPI CCDG 8 cut(s) 72, 111, 130, 138, 158, 205, 206, 216
Lsp1109I GCAGC 2 cut(s) 84, 204
MaeII ACGT 1 cut(s) 307
MalI GATC 2 cut(s) 133, 159
MboI GATC 2 cut(s) 131, 157
MhlI GDGCHC 1 cut(s) 248
MluCI AATT 2 cut(s) 112, 281
Mly113I GGCGCC 2 cut(s) 33, 257
MlyI GAGTC 2 cut(s) 112, 180
MmeI TCCRAC 1 cut(s) 145
MnlI CCTC 3 cut(s) 35, 61, 258
MspA1I CMGCKG 2 cut(s) 62, 109
MspI CCGG 3 cut(s) 98, 125, 192
MspR9I CCNGG 2 cut(s) 98, 193
MteI GCGCNGCGC 1 cut(s) 255
MvnI CGCG 3 cut(s) 48, 252, 254
NarI GGCGCC 2 cut(s) 33, 257
NciI CCSGG 2 cut(s) 98, 193
NdeII GATC 2 cut(s) 131, 157
NlaIV GGNNCC 3 cut(s) 34, 246, 258
PalAI GGCGCGCC 1 cut(s) 46
PauI GCGCGC 1 cut(s) 46
PcsI WCGNNNNNNNCGW 1 cut(s) 304
Pfl23II CGTACG 2 cut(s) 27, 261
PkrI GCNGC 3 cut(s) 74, 219, 256
PleI GAGTC 2 cut(s) 111, 180
PluTI GGCGCC 2 cut(s) 36, 260
PpsI GAGTC 2 cut(s) 111, 180
PspFI CCCAGC 2 cut(s) 58, 230
PspLI CGTACG 2 cut(s) 27, 261
PspN4I GGNNCC 3 cut(s) 34, 246, 258
PspOMI GGGCCC 1 cut(s) 244
PspPI GGNCC 2 cut(s) 244, 245
PteI GCGCGC 1 cut(s) 46
RsaI GTAC 2 cut(s) 29, 263
RsaNI GTAC 2 cut(s) 28, 262
SatI GCNGC 3 cut(s) 73, 218, 255
Sau3AI GATC 2 cut(s) 131, 157
Sau96I GGNCC 2 cut(s) 244, 245
SchI GAGTC 2 cut(s) 112, 180
ScrFI CCNGG 2 cut(s) 98, 193
SduI GDGCHC 1 cut(s) 248
SetI ASST 3 cut(s) 77, 219, 310
SfoI GGCGCC 2 cut(s) 34, 258
SgsI GGCGCGCC 1 cut(s) 46
Sse9I AATT 2 cut(s) 112, 281
SsiI CCGC 6 cut(s) 62, 107, 242, 254, 286, 303
SspDI GGCGCC 2 cut(s) 32, 256
StyD4I CCNGG 2 cut(s) 96, 191
TaaI ACNGT 4 cut(s) 27, 266, 292, 300
TaiI ACGT 1 cut(s) 310
TaqI TCGA 1 cut(s) 134
TasI AATT 2 cut(s) 112, 281
TauI GCSGC 1 cut(s) 257
TseI GCWGC 2 cut(s) 72, 217
TspGWI ACGGA 5 cut(s) 5, 198, 289, 293, 300
XapI RAATTY 2 cut(s) 112, 281
ZraI GACGTC 1 cut(s) 308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.