FvH4_6g09511

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000118
Physical Location & Seq
Forward (+)
5669013 .. 5672655
3643 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g09511.t1

Sequence Viewer

Length: 615 bp
ATGAAAGCTCTTGTCAATCCTTATAAGGTAACAAAAGTGTCTGGTGGTGGTGGACTTGTGGGTGGCGACGTCAGAAACCACAAGCAACGGTGGTGGACTGGTGGTGGAAAGACAGGTGTGAGAAAAGCGCAAGCTCCGCCATATATGGCCGGATATGGAGCGGACGTCCGCACCGGCCTTAAAATGTGGACGTCCGTCCGTTCTCCACCCTCTGGCGCCGGCGACGGCGCGCCTCCACCCCAAAAGACTCCAGCAGCGTCCCCGACCACTTTCCCTCCCCGGCGAAAAGTGGTCGGGGAGGCTGCTGGACTAGTCTTCTGGGGTGGAGGCGCGCGGTCGCCAGCGCCGGACGATGAAGAACGGAGGGACGTCCGCACTCTCATCCTCTTTGTGTCAAATATTGACTTGGTGAATAGGAGGCAAAATGTGTTCATTCTCAGTCTTCAATGGTGTGCTCCTGCTTTTGTAATAGGAGGGAAGAAAAAGGCTTTGCCTTTTTCACATGAATGGATGTTGCTTATAAATTGGCTGCATGGAAACCATTTGAAGCATGCAAGCAAGTTTGCATCGAGTAAGCATCAGACAAGCAATAAAGAGCTTGTGGGTTGTGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

205

Amino Acids

22.03

Weight (kDa)

10.42

Isoelectric Point (pI)

59.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000118)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01361 FvH4_1g07161 FvH4_1g07431 FvH4_1g07821 FvH4_1g08223 FvH4_1g10041 FvH4_1g12132 FvH4_1g15053 FvH4_1g18161 FvH4_1g18400 FvH4_1g18931 FvH4_1g19242 FvH4_1g19461 FvH4_1g20550 FvH4_1g21381 FvH4_1g21542 FvH4_1g22102 FvH4_1g23991 FvH4_1g24542 FvH4_1g24951 FvH4_1g24960 FvH4_1g25272 FvH4_1g25552 FvH4_1g25771 FvH4_1g28771 FvH4_1g29201 FvH4_1g29611 FvH4_2g01181 FvH4_2g02491 FvH4_2g04621 FvH4_2g04631 FvH4_2g07460 FvH4_2g08540 FvH4_2g08550 FvH4_2g09292 FvH4_2g10501 FvH4_2g12101 FvH4_2g12220 FvH4_2g12551 FvH4_2g14071 FvH4_2g14241 FvH4_2g15041 FvH4_2g15311 FvH4_2g18971 FvH4_2g19220 FvH4_2g19260 FvH4_2g19611 FvH4_2g19652 FvH4_2g20211 FvH4_2g20231 FvH4_2g21541 FvH4_2g22380 FvH4_2g27712 FvH4_2g28171 FvH4_2g29879 FvH4_2g32391 FvH4_3g02171 FvH4_3g05531 FvH4_3g09750 FvH4_3g10310 FvH4_3g10460 FvH4_3g13172 FvH4_3g15232 FvH4_3g18481 FvH4_3g18621 FvH4_3g20504 FvH4_3g20812 FvH4_3g22320 FvH4_3g22930 FvH4_3g22940 FvH4_3g23752 FvH4_3g24791 FvH4_3g26411 FvH4_3g26432 FvH4_3g27201 FvH4_3g27862 FvH4_3g28871 FvH4_3g28954 FvH4_3g29131 FvH4_3g29832 FvH4_3g29922 FvH4_3g30190 FvH4_3g32231 FvH4_3g32250 FvH4_3g33460 FvH4_3g34670 FvH4_3g36982 FvH4_3g37001 FvH4_3g38252 FvH4_3g38772 FvH4_3g40141 FvH4_3g40181 FvH4_3g42521 FvH4_4g00090 FvH4_4g00290 FvH4_4g00301 FvH4_4g00530 FvH4_4g00823 FvH4_4g02300 FvH4_4g02450 FvH4_4g03360 FvH4_4g04481 FvH4_4g04761 FvH4_4g06301 FvH4_4g06630 FvH4_4g08312 FvH4_4g08552 FvH4_4g10053 FvH4_4g11971 FvH4_4g13211 FvH4_4g13511 FvH4_4g15351 FvH4_4g16360 FvH4_4g16601 FvH4_4g18462 FvH4_4g22911 FvH4_4g23221 FvH4_4g24301 FvH4_4g24721 FvH4_4g27905 FvH4_4g28971 FvH4_4g29540 FvH4_4g30720 FvH4_4g31521 FvH4_4g33371 FvH4_4g34111 FvH4_4g35740 FvH4_5g00131 FvH4_5g02530 FvH4_5g02550 FvH4_5g02560 FvH4_5g02580 FvH4_5g03783 FvH4_5g05681 FvH4_5g05681 FvH4_5g09371 FvH4_5g09381 FvH4_5g14611 FvH4_5g15341 FvH4_5g19801 FvH4_5g20110 FvH4_5g20911 FvH4_5g22230 FvH4_5g25751 FvH4_5g26070 FvH4_5g26471 FvH4_5g27072 FvH4_5g27471 FvH4_5g27471 FvH4_5g27998 FvH4_5g28291 FvH4_5g30951 FvH4_5g31082 FvH4_5g31890 FvH4_5g32251 FvH4_5g34112 FvH4_5g37184 FvH4_5g37993 FvH4_5g38271 FvH4_6g00153 FvH4_6g00640 FvH4_6g05921 FvH4_6g08591 FvH4_6g09511 FvH4_6g10331 FvH4_6g10401 FvH4_6g14161 FvH4_6g14171 FvH4_6g18481 FvH4_6g19721 FvH4_6g19980 FvH4_6g20104 FvH4_6g20112 FvH4_6g21261 FvH4_6g21651 FvH4_6g22051 FvH4_6g23141 FvH4_6g24822 FvH4_6g25082 FvH4_6g25391 FvH4_6g25560 FvH4_6g26350 FvH4_6g27031 FvH4_6g27810 FvH4_6g27971 FvH4_6g28331 FvH4_6g29391 FvH4_6g30781 FvH4_6g32221 FvH4_6g34680 FvH4_6g36181 FvH4_6g36551 FvH4_6g37491 FvH4_6g37663 FvH4_6g39590 FvH4_6g40582 FvH4_6g43843 FvH4_6g50551 FvH4_7g00240 FvH4_7g00731 FvH4_7g01031 FvH4_7g03301 FvH4_7g08180 FvH4_7g08180 FvH4_7g10631 FvH4_7g19710 FvH4_7g23892 FvH4_7g25280 FvH4_7g25551 FvH4_7g30121 FvH4_7g31931 FvH4_7g32672 FvH4_c21g00040 FvH4_c2g00053
prunus_persica Prupe.1G448800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322451 RchiOBHm_Chr5g0015171
rosa_laevigata RLG00000003077 RLG00000018186 RLG00000030343
rosa_multiflora Rmu_co8096726.1_g000001
rosa_roxburghii Rroxscaffold_157G00438380 Rroxscaffold_1G00001730 Rroxscaffold_3G00236310
rosa_rugosa Rorug02G0236500
rosa_samantha Rh4BG247300 Rh6BG286200 Rh6CG287300 Rh7DG257500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 24, 521
AatII GACGTC 4 cut(s) 72, 168, 194, 372
AccB1I GGYRCC 1 cut(s) 215
AccB7I CCANNNNNTGG 1 cut(s) 212
AccBSI CCGCTC 1 cut(s) 161
AccII CGCG 3 cut(s) 230, 332, 334
AciI CCGC 5 cut(s) 137, 161, 169, 334, 373
AcoI YGGCCR 1 cut(s) 147
AcyI GRCGYC 5 cut(s) 69, 165, 191, 216, 369
AfiI CCNNNNNNNGG 1 cut(s) 212
AgsI TTSAA 2 cut(s) 446, 547
AhlI ACTAGT 1 cut(s) 310
AluBI AGCT 3 cut(s) 8, 134, 598
AluI AGCT 3 cut(s) 8, 134, 598
Alw21I GWGCWC 1 cut(s) 457
AoxI GGCC 2 cut(s) 147, 175
ApeKI GCWGC 3 cut(s) 254, 302, 529
AscI GGCGCGCC 1 cut(s) 228
AspLEI GCGC 7 cut(s) 130, 218, 230, 232, 332, 334, 346
AsuC2I CCSGG 1 cut(s) 280
AsuHPI GGTGA 1 cut(s) 421
BanI GGYRCC 1 cut(s) 215
BbsI GAAGAC 2 cut(s) 307, 434
Bbv12I GWGCWC 1 cut(s) 457
BbvI GCAGC 3 cut(s) 266, 289, 516
BceAI ACGGC 1 cut(s) 241
BcnI CCSGG 1 cut(s) 280
BcuI ACTAGT 1 cut(s) 310
BfaI CTAG 1 cut(s) 311
BfoI RGCGCY 2 cut(s) 219, 347
BisI GCNGC 3 cut(s) 255, 303, 530
BlsI GCNGC 3 cut(s) 256, 304, 531
Bme1390I CCNGG 1 cut(s) 280
BmiI GGNNCC 1 cut(s) 217
BmrFI CCNGG 1 cut(s) 280
BmsI GCATC 2 cut(s) 575, 586
BoxI GACNNNNGTC 1 cut(s) 194
BpiI GAAGAC 2 cut(s) 307, 434
BpmI CTGGAG 1 cut(s) 234
BpuMI CCSGG 1 cut(s) 280
BsaHI GRCGYC 5 cut(s) 69, 165, 191, 216, 369
BsaJI CCNNGG 1 cut(s) 278
BsaXI ACNNNNNCTCC 4 cut(s) 150, 180, 259, 289
Bsc4I CCNNNNNNNGG 1 cut(s) 212
Bse118I RCCGGY 2 cut(s) 173, 218
Bse1I ACTGG 1 cut(s) 103
BseDI CCNNGG 1 cut(s) 278
BseGI GGATG 2 cut(s) 381, 516
BseLI CCNNNNNNNGG 1 cut(s) 212
BseMII CTCAG 1 cut(s) 451
BseNI ACTGG 1 cut(s) 103
BsePI GCGCGC 2 cut(s) 228, 330
BseXI GCAGC 3 cut(s) 266, 289, 516
Bsh1236I CGCG 3 cut(s) 230, 332, 334
Bsh1285I CGRYCG 1 cut(s) 338
BshFI GGCC 2 cut(s) 149, 177
BshNI GGYRCC 1 cut(s) 215
BsiEI CGRYCG 1 cut(s) 338
BsiHKAI GWGCWC 1 cut(s) 457
BsiSI CCGG 5 cut(s) 150, 174, 219, 280, 347
BslFI GGGAC 2 cut(s) 244, 380
BslI CCNNNNNNNGG 1 cut(s) 212
BsmFI GGGAC 2 cut(s) 244, 380
BsnI GGCC 2 cut(s) 149, 177
Bsp1286I GDGCHC 1 cut(s) 457
BspACI CCGC 5 cut(s) 137, 161, 169, 334, 373
BspANI GGCC 2 cut(s) 149, 177
BspCNI CTCAG 1 cut(s) 450
BspFNI CGCG 3 cut(s) 230, 332, 334
BspLI GGNNCC 1 cut(s) 217
BspT107I GGYRCC 1 cut(s) 215
BsrBI CCGCTC 1 cut(s) 161
BsrFI RCCGGY 2 cut(s) 173, 218
BsrI ACTGG 1 cut(s) 103
BssAI RCCGGY 2 cut(s) 173, 218
BssECI CCNNGG 1 cut(s) 278
BssHII GCGCGC 2 cut(s) 228, 330
BssNI GRCGYC 5 cut(s) 69, 165, 191, 216, 369
Bst4CI ACNGT 1 cut(s) 90
BstACI GRCGYC 5 cut(s) 69, 165, 191, 216, 369
BstC8I GCNNGC 7 cut(s) 132, 220, 230, 332, 342, 552, 556
BstDEI CTNAG 1 cut(s) 437
BstF5I GGATG 2 cut(s) 381, 516
BstFNI CGCG 3 cut(s) 230, 332, 334
BstH2I RGCGCY 2 cut(s) 219, 347
BstHHI GCGC 7 cut(s) 130, 218, 230, 232, 332, 334, 346
BstMCI CGRYCG 1 cut(s) 338
BstMWI GCNNNNNNNGC 1 cut(s) 136
BstNSI RCATGY 1 cut(s) 554
BstPAI GACNNNNGTC 1 cut(s) 194
BstSCI CCNGG 1 cut(s) 278
BstUI CGCG 3 cut(s) 230, 332, 334
BstV1I GCAGC 3 cut(s) 266, 289, 516
BstV2I GAAGAC 2 cut(s) 307, 434
BsuRI GGCC 2 cut(s) 149, 177
BtsCI GGATG 2 cut(s) 381, 516
Cac8I GCNNGC 7 cut(s) 132, 220, 230, 332, 342, 552, 556
CfoI GCGC 7 cut(s) 130, 218, 230, 232, 332, 334, 346
Cfr10I RCCGGY 2 cut(s) 173, 218
CseI GACGC 1 cut(s) 246
CspCI CAANNNNNGTGG 2 cut(s) 74, 109
CviAII CATG 4 cut(s) 503, 533, 551, 612
CviJI RGCY 8 cut(s) 8, 134, 149, 177, 302, 488, 529, 598
CviKI_1 RGCY 8 cut(s) 8, 134, 149, 177, 302, 488, 529, 598
DdeI CTNAG 1 cut(s) 437
DinI GGCGCC 1 cut(s) 217
EaeI YGGCCR 1 cut(s) 147
EciI GGCGGA 1 cut(s) 126
EgeI GGCGCC 1 cut(s) 217
EheI GGCGCC 1 cut(s) 217
FaeI CATG 4 cut(s) 506, 536, 554, 615
FaqI GGGAC 2 cut(s) 244, 380
FatI CATG 4 cut(s) 502, 532, 550, 611
Fnu4HI GCNGC 3 cut(s) 255, 303, 530
FokI GGATG 2 cut(s) 368, 523
Fsp4HI GCNGC 3 cut(s) 255, 303, 530
FspBI CTAG 1 cut(s) 311
GlaI GCGC 7 cut(s) 129, 217, 229, 231, 331, 333, 345
GluI GCNGC 3 cut(s) 255, 303, 530
GsuI CTGGAG 1 cut(s) 234
HaeII RGCGCY 2 cut(s) 219, 347
HaeIII GGCC 2 cut(s) 149, 177
HapII CCGG 5 cut(s) 150, 174, 219, 280, 347
HgaI GACGC 1 cut(s) 246
HhaI GCGC 7 cut(s) 130, 218, 230, 232, 332, 334, 346
Hin1I GRCGYC 5 cut(s) 69, 165, 191, 216, 369
Hin1II CATG 4 cut(s) 506, 536, 554, 615
Hin6I GCGC 7 cut(s) 128, 216, 228, 230, 330, 332, 344
HinP1I GCGC 7 cut(s) 128, 216, 228, 230, 330, 332, 344
HinfI GANTC 1 cut(s) 247
HpaII CCGG 5 cut(s) 150, 174, 219, 280, 347
HphI GGTGA 1 cut(s) 421
Hpy166II GTNNAC 3 cut(s) 53, 96, 189
Hpy188I TCNGA 2 cut(s) 74, 582
Hpy8I GTNNAC 3 cut(s) 53, 96, 189
Hpy99I CGWCG 2 cut(s) 71, 227
HpyCH4III ACNGT 1 cut(s) 90
HpyCH4IV ACGT 4 cut(s) 69, 165, 191, 369
HpyCH4V TGCA 4 cut(s) 532, 554, 566, 611
HpyF10VI GCNNNNNNNGC 1 cut(s) 136
HpyF3I CTNAG 1 cut(s) 437
HpySE526I ACGT 4 cut(s) 69, 165, 191, 369
Hsp92I GRCGYC 5 cut(s) 69, 165, 191, 216, 369
Hsp92II CATG 4 cut(s) 506, 536, 554, 615
HspAI GCGC 7 cut(s) 128, 216, 228, 230, 330, 332, 344
KasI GGCGCC 1 cut(s) 215
KroI GCCGGC 1 cut(s) 218
KroNI GCCGGC 1 cut(s) 220
LmnI GCTCC 3 cut(s) 139, 158, 460
Lsp1109I GCAGC 3 cut(s) 266, 289, 516
LweI GCATC 2 cut(s) 575, 586
MaeI CTAG 1 cut(s) 311
MaeII ACGT 4 cut(s) 69, 165, 191, 369
MaeIII GTNAC 1 cut(s) 28
MbiI CCGCTC 1 cut(s) 161
MboII GAAGA 4 cut(s) 307, 368, 434, 490
MhlI GDGCHC 1 cut(s) 457
MluCI AATT 1 cut(s) 523
Mly113I GGCGCC 1 cut(s) 216
MlyI GAGTC 1 cut(s) 241
MnlI CCTC 9 cut(s) 220, 243, 285, 292, 320, 357, 395, 411, 467
MreI CGCCGGCG 1 cut(s) 218
MroNI GCCGGC 1 cut(s) 218
MseI TTAA 1 cut(s) 180
MslI CAYNNNNRTG 1 cut(s) 505
MspI CCGG 5 cut(s) 150, 174, 219, 280, 347
MspR9I CCNGG 1 cut(s) 280
MvnI CGCG 3 cut(s) 230, 332, 334
MwoI GCNNNNNNNGC 1 cut(s) 136
NaeI GCCGGC 1 cut(s) 220
NarI GGCGCC 1 cut(s) 216
NciI CCSGG 1 cut(s) 280
NgoMIV GCCGGC 1 cut(s) 218
NlaIII CATG 4 cut(s) 506, 536, 554, 615
NlaIV GGNNCC 1 cut(s) 217
NspI RCATGY 1 cut(s) 554
PaeI GCATGC 1 cut(s) 554
PalAI GGCGCGCC 1 cut(s) 228
PauI GCGCGC 2 cut(s) 228, 330
PdiI GCCGGC 1 cut(s) 220
PflMI CCANNNNNTGG 1 cut(s) 212
PkrI GCNGC 3 cut(s) 256, 304, 531
PleI GAGTC 1 cut(s) 241
PluTI GGCGCC 1 cut(s) 219
PpsI GAGTC 1 cut(s) 241
PshAI GACNNNNGTC 1 cut(s) 194
PsiI TTATAA 2 cut(s) 24, 521
PspN4I GGNNCC 1 cut(s) 217
PteI GCGCGC 2 cut(s) 228, 330
RseI CAYNNNNRTG 1 cut(s) 505
SaqAI TTAA 1 cut(s) 180
SatI GCNGC 3 cut(s) 255, 303, 530
SchI GAGTC 1 cut(s) 241
ScrFI CCNGG 1 cut(s) 280
SduI GDGCHC 1 cut(s) 457
SetI ASST 9 cut(s) 10, 30, 72, 118, 136, 168, 194, 372, 600
SfaNI GCATC 2 cut(s) 575, 586
SfoI GGCGCC 1 cut(s) 217
SgrAI CRCCGGYG 1 cut(s) 218
SgsI GGCGCGCC 1 cut(s) 228
SmiMI CAYNNNNRTG 1 cut(s) 505
SpeI ACTAGT 1 cut(s) 310
SphI GCATGC 1 cut(s) 554
Sse9I AATT 1 cut(s) 523
SsiI CCGC 5 cut(s) 137, 161, 169, 334, 373
SspDI GGCGCC 1 cut(s) 215
SspI AATATT 1 cut(s) 400
SspMI CTAG 1 cut(s) 311
StyD4I CCNGG 1 cut(s) 278
TaaI ACNGT 1 cut(s) 90
TaiI ACGT 4 cut(s) 72, 168, 194, 372
TaqI TCGA 1 cut(s) 569
TasI AATT 1 cut(s) 523
Tru1I TTAA 1 cut(s) 180
Tru9I TTAA 1 cut(s) 180
TseI GCWGC 3 cut(s) 254, 302, 529
TspDTI ATGAA 4 cut(s) 17, 369, 421, 519
TspGWI ACGGA 3 cut(s) 184, 188, 376
Van91I CCANNNNNTGG 1 cut(s) 212
XceI RCATGY 1 cut(s) 554
XspI CTAG 1 cut(s) 311
ZraI GACGTC 4 cut(s) 70, 166, 192, 370
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.