FvH4_2g18971

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000118
Physical Location & Seq
Forward (+)
16145205 .. 16145730
526 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g18971.t1

Sequence Viewer

Length: 423 bp
ATGGAAGAAAACAAGACAAGTGATGTGTTGACGACGTCGAGAAGGTCCTATTGTTGGTGGTTCACCGTCGAAAAGCCACCGGAGACGGACTTATTCTGGGTCGACGGTTCGTCGCTCTCGGTCGCGAGCTCAATCCACACAGAGTTTCAAATAAAGGAATGTGGTTGGAATGAAGGGAAGCATTTTCCCTCCAACTTTCCTTTCACCTTGGAACCAGTTTCTTTTCCTACCTCTGTCCTGTTGGCTTCCAAACAAAGGAAAGGAATGAGTTTCCTTTCCCAAGACCTTCATTCCATGAACCAAACATGGCCTAAGAGTAATGGTGCGTATAGTTTGGGGGCACTTACATTGCCAAGGGCAAGACAAGGTGGGACAGATCATCACCTGAGTCGACCATTGTCTGTGATTGTGAAACCATTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

141

Amino Acids

15.82

Weight (kDa)

7.84

Isoelectric Point (pI)

48.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000118)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01361 FvH4_1g07161 FvH4_1g07431 FvH4_1g07821 FvH4_1g08223 FvH4_1g10041 FvH4_1g12132 FvH4_1g15053 FvH4_1g18161 FvH4_1g18400 FvH4_1g18931 FvH4_1g19242 FvH4_1g19461 FvH4_1g20550 FvH4_1g21381 FvH4_1g21542 FvH4_1g22102 FvH4_1g23991 FvH4_1g24542 FvH4_1g24951 FvH4_1g24960 FvH4_1g25272 FvH4_1g25552 FvH4_1g25771 FvH4_1g28771 FvH4_1g29201 FvH4_1g29611 FvH4_2g01181 FvH4_2g02491 FvH4_2g04621 FvH4_2g04631 FvH4_2g07460 FvH4_2g08540 FvH4_2g08550 FvH4_2g09292 FvH4_2g10501 FvH4_2g12101 FvH4_2g12220 FvH4_2g12551 FvH4_2g14071 FvH4_2g14241 FvH4_2g15041 FvH4_2g15311 FvH4_2g18971 FvH4_2g19220 FvH4_2g19260 FvH4_2g19611 FvH4_2g19652 FvH4_2g20211 FvH4_2g20231 FvH4_2g21541 FvH4_2g22380 FvH4_2g27712 FvH4_2g28171 FvH4_2g29879 FvH4_2g32391 FvH4_3g02171 FvH4_3g05531 FvH4_3g09750 FvH4_3g10310 FvH4_3g10460 FvH4_3g13172 FvH4_3g15232 FvH4_3g18481 FvH4_3g18621 FvH4_3g20504 FvH4_3g20812 FvH4_3g22320 FvH4_3g22930 FvH4_3g22940 FvH4_3g23752 FvH4_3g24791 FvH4_3g26411 FvH4_3g26432 FvH4_3g27201 FvH4_3g27862 FvH4_3g28871 FvH4_3g28954 FvH4_3g29131 FvH4_3g29832 FvH4_3g29922 FvH4_3g30190 FvH4_3g32231 FvH4_3g32250 FvH4_3g33460 FvH4_3g34670 FvH4_3g36982 FvH4_3g37001 FvH4_3g38252 FvH4_3g38772 FvH4_3g40141 FvH4_3g40181 FvH4_3g42521 FvH4_4g00090 FvH4_4g00290 FvH4_4g00301 FvH4_4g00530 FvH4_4g00823 FvH4_4g02300 FvH4_4g02450 FvH4_4g03360 FvH4_4g04481 FvH4_4g04761 FvH4_4g06301 FvH4_4g06630 FvH4_4g08312 FvH4_4g08552 FvH4_4g10053 FvH4_4g11971 FvH4_4g13211 FvH4_4g13511 FvH4_4g15351 FvH4_4g16360 FvH4_4g16601 FvH4_4g18462 FvH4_4g22911 FvH4_4g23221 FvH4_4g24301 FvH4_4g24721 FvH4_4g27905 FvH4_4g28971 FvH4_4g29540 FvH4_4g30720 FvH4_4g31521 FvH4_4g33371 FvH4_4g34111 FvH4_4g35740 FvH4_5g00131 FvH4_5g02530 FvH4_5g02550 FvH4_5g02560 FvH4_5g02580 FvH4_5g03783 FvH4_5g05681 FvH4_5g05681 FvH4_5g09371 FvH4_5g09381 FvH4_5g14611 FvH4_5g15341 FvH4_5g19801 FvH4_5g20110 FvH4_5g20911 FvH4_5g22230 FvH4_5g25751 FvH4_5g26070 FvH4_5g26471 FvH4_5g27072 FvH4_5g27471 FvH4_5g27471 FvH4_5g27998 FvH4_5g28291 FvH4_5g30951 FvH4_5g31082 FvH4_5g31890 FvH4_5g32251 FvH4_5g34112 FvH4_5g37184 FvH4_5g37993 FvH4_5g38271 FvH4_6g00153 FvH4_6g00640 FvH4_6g05921 FvH4_6g08591 FvH4_6g09511 FvH4_6g10331 FvH4_6g10401 FvH4_6g14161 FvH4_6g14171 FvH4_6g18481 FvH4_6g19721 FvH4_6g19980 FvH4_6g20104 FvH4_6g20112 FvH4_6g21261 FvH4_6g21651 FvH4_6g22051 FvH4_6g23141 FvH4_6g24822 FvH4_6g25082 FvH4_6g25391 FvH4_6g25560 FvH4_6g26350 FvH4_6g27031 FvH4_6g27810 FvH4_6g27971 FvH4_6g28331 FvH4_6g29391 FvH4_6g30781 FvH4_6g32221 FvH4_6g34680 FvH4_6g36181 FvH4_6g36551 FvH4_6g37491 FvH4_6g37663 FvH4_6g39590 FvH4_6g40582 FvH4_6g43843 FvH4_6g50551 FvH4_7g00240 FvH4_7g00731 FvH4_7g01031 FvH4_7g03301 FvH4_7g08180 FvH4_7g08180 FvH4_7g10631 FvH4_7g19710 FvH4_7g23892 FvH4_7g25280 FvH4_7g25551 FvH4_7g30121 FvH4_7g31931 FvH4_7g32672 FvH4_c21g00040 FvH4_c2g00053
prunus_persica Prupe.1G448800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322451 RchiOBHm_Chr5g0015171
rosa_laevigata RLG00000003077 RLG00000018186 RLG00000030343
rosa_multiflora Rmu_co8096726.1_g000001
rosa_roxburghii Rroxscaffold_157G00438380 Rroxscaffold_1G00001730 Rroxscaffold_3G00236310
rosa_rugosa Rorug02G0236500
rosa_samantha Rh4BG247300 Rh6BG286200 Rh6CG287300 Rh7DG257500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 38
AccI GTMKAC 2 cut(s) 102, 391
AccII CGCG 1 cut(s) 125
AcyI GRCGYC 1 cut(s) 35
AfiI CCNNNNNNNGG 2 cut(s) 54, 255
AgsI TTSAA 1 cut(s) 149
AhdI GACNNNNNGTC 1 cut(s) 109
AjuI GAANNNNNNNTTGG 2 cut(s) 185, 217
AluBI AGCT 1 cut(s) 129
AluI AGCT 1 cut(s) 129
Alw21I GWGCWC 1 cut(s) 131
Alw26I GTCTC 1 cut(s) 77
AoxI GGCC 1 cut(s) 308
AspS9I GGNCC 1 cut(s) 45
AsuHPI GGTGA 3 cut(s) 55, 196, 374
AvaII GGWCC 1 cut(s) 45
BaeGI GKGCMC 1 cut(s) 343
BanII GRGCYC 1 cut(s) 131
Bbv12I GWGCWC 1 cut(s) 131
BcoDI GTCTC 1 cut(s) 77
Bme18I GGWCC 1 cut(s) 45
BmeRI GACNNNNNGTC 1 cut(s) 109
BmgT120I GGNCC 1 cut(s) 45
BmiI GGNNCC 1 cut(s) 213
BoxI GACNNNNGTC 1 cut(s) 397
BsaHI GRCGYC 1 cut(s) 35
BsaJI CCNNGG 2 cut(s) 207, 353
BsaWI WCCGGW 1 cut(s) 79
Bsc4I CCNNNNNNNGG 2 cut(s) 54, 255
Bse1I ACTGG 1 cut(s) 215
Bse3DI GCAATG 1 cut(s) 347
BseDI CCNNGG 2 cut(s) 207, 353
BseLI CCNNNNNNNGG 2 cut(s) 54, 255
BseMI GCAATG 1 cut(s) 347
BseMII CTCAG 1 cut(s) 377
BseNI ACTGG 1 cut(s) 215
BseSI GKGCMC 1 cut(s) 343
Bsh1236I CGCG 1 cut(s) 125
Bsh1285I CGRYCG 1 cut(s) 123
BshFI GGCC 1 cut(s) 310
BsiEI CGRYCG 1 cut(s) 123
BsiHKAI GWGCWC 1 cut(s) 131
BsiSI CCGG 1 cut(s) 80
BslFI GGGAC 1 cut(s) 385
BslI CCNNNNNNNGG 2 cut(s) 54, 255
BsmAI GTCTC 1 cut(s) 77
BsmBI CGTCTC 1 cut(s) 77
BsmFI GGGAC 1 cut(s) 385
BsnI GGCC 1 cut(s) 310
Bsp1286I GDGCHC 2 cut(s) 131, 343
Bsp143I GATC 1 cut(s) 376
Bsp68I TCGCGA 1 cut(s) 125
BspANI GGCC 1 cut(s) 310
BspCNI CTCAG 1 cut(s) 378
BspFNI CGCG 1 cut(s) 125
BspLI GGNNCC 1 cut(s) 213
BsrDI GCAATG 1 cut(s) 347
BsrI ACTGG 1 cut(s) 215
BssECI CCNNGG 2 cut(s) 207, 353
BssMI GATC 1 cut(s) 376
BssNI GRCGYC 1 cut(s) 35
BssT1I CCWWGG 2 cut(s) 207, 353
Bst4CI ACNGT 2 cut(s) 67, 107
BstACI GRCGYC 1 cut(s) 35
BstC8I GCNNGC 1 cut(s) 127
BstDEI CTNAG 2 cut(s) 312, 386
BstFNI CGCG 1 cut(s) 125
BstKTI GATC 1 cut(s) 379
BstMAI GTCTC 1 cut(s) 77
BstMBI GATC 1 cut(s) 376
BstMCI CGRYCG 1 cut(s) 123
BstPAI GACNNNNGTC 1 cut(s) 397
BstSLI GKGCMC 1 cut(s) 343
BstUI CGCG 1 cut(s) 125
BsuRI GGCC 1 cut(s) 310
BtuMI TCGCGA 1 cut(s) 125
Cac8I GCNNGC 1 cut(s) 127
Cfr13I GGNCC 1 cut(s) 45
CviAII CATG 2 cut(s) 295, 306
CviJI RGCY 4 cut(s) 76, 129, 245, 310
CviKI_1 RGCY 4 cut(s) 76, 129, 245, 310
DdeI CTNAG 2 cut(s) 312, 386
DpnI GATC 1 cut(s) 378
DpnII GATC 1 cut(s) 376
DriI GACNNNNNGTC 1 cut(s) 109
Eam1105I GACNNNNNGTC 1 cut(s) 109
Ecl136II GAGCTC 1 cut(s) 129
Eco130I CCWWGG 2 cut(s) 207, 353
Eco24I GRGCYC 1 cut(s) 131
Eco47I GGWCC 1 cut(s) 45
Eco53kI GAGCTC 1 cut(s) 129
EcoICRI GAGCTC 1 cut(s) 129
EcoO109I RGGNCCY 1 cut(s) 45
EcoT14I CCWWGG 2 cut(s) 207, 353
EcoT38I GRGCYC 1 cut(s) 131
ErhI CCWWGG 2 cut(s) 207, 353
Esp3I CGTCTC 1 cut(s) 77
FaeI CATG 2 cut(s) 298, 309
FaiI YATR 3 cut(s) 296, 307, 330
FaqI GGGAC 1 cut(s) 385
FatI CATG 2 cut(s) 294, 305
FblI GTMKAC 2 cut(s) 102, 391
FriOI GRGCYC 1 cut(s) 131
HaeIII GGCC 1 cut(s) 310
HapII CCGG 1 cut(s) 80
Hin1I GRCGYC 1 cut(s) 35
Hin1II CATG 2 cut(s) 298, 309
HincII GTYRAC 3 cut(s) 30, 103, 392
HindII GTYRAC 3 cut(s) 30, 103, 392
HinfI GANTC 1 cut(s) 388
HpaII CCGG 1 cut(s) 80
HphI GGTGA 3 cut(s) 55, 196, 374
Hpy166II GTNNAC 4 cut(s) 30, 63, 103, 392
Hpy188III TCNNGA 2 cut(s) 39, 124
Hpy8I GTNNAC 4 cut(s) 30, 63, 103, 392
Hpy99I CGWCG 5 cut(s) 37, 40, 71, 107, 115
HpyAV CCTTC 3 cut(s) 36, 167, 296
HpyCH4III ACNGT 2 cut(s) 67, 107
HpyCH4IV ACGT 1 cut(s) 35
HpyF3I CTNAG 2 cut(s) 312, 386
HpySE526I ACGT 1 cut(s) 35
Hsp92I GRCGYC 1 cut(s) 35
Hsp92II CATG 2 cut(s) 298, 309
Kzo9I GATC 1 cut(s) 376
LpnPI CCDG 5 cut(s) 82, 93, 228, 251, 398
MaeII ACGT 1 cut(s) 35
MalI GATC 1 cut(s) 378
MboI GATC 1 cut(s) 376
MboII GAAGA 1 cut(s) 17
MhlI GDGCHC 2 cut(s) 131, 343
MlyI GAGTC 1 cut(s) 397
MmeI TCCRAC 2 cut(s) 146, 216
MnlI CCTC 2 cut(s) 199, 241
MseI TTAA 1 cut(s) 421
MspI CCGG 1 cut(s) 80
MvnI CGCG 1 cut(s) 125
NdeII GATC 1 cut(s) 376
NlaIII CATG 2 cut(s) 298, 309
NlaIV GGNNCC 1 cut(s) 213
NruI TCGCGA 1 cut(s) 125
PflFI GACNNNGTC 1 cut(s) 34
PleI GAGTC 1 cut(s) 396
PpsI GAGTC 1 cut(s) 396
PpuMI RGGWCCY 1 cut(s) 45
PshAI GACNNNNGTC 1 cut(s) 397
Psp124BI GAGCTC 1 cut(s) 131
Psp5II RGGWCCY 1 cut(s) 45
PspN4I GGNNCC 1 cut(s) 213
PspPI GGNCC 1 cut(s) 45
PspPPI RGGWCCY 1 cut(s) 45
PsyI GACNNNGTC 1 cut(s) 34
RruI TCGCGA 1 cut(s) 125
SacI GAGCTC 1 cut(s) 131
SalI GTCGAC 2 cut(s) 101, 390
SaqAI TTAA 1 cut(s) 421
Sau3AI GATC 1 cut(s) 376
Sau96I GGNCC 1 cut(s) 45
SchI GAGTC 1 cut(s) 397
SduI GDGCHC 2 cut(s) 131, 343
SetI ASST 8 cut(s) 38, 47, 131, 209, 233, 288, 370, 387
SinI GGWCC 1 cut(s) 45
SstI GAGCTC 1 cut(s) 131
StyI CCWWGG 2 cut(s) 207, 353
TaaI ACNGT 2 cut(s) 67, 107
TaiI ACGT 1 cut(s) 38
TaqI TCGA 4 cut(s) 38, 69, 102, 391
TaqII GACCGA 1 cut(s) 109
Tru1I TTAA 1 cut(s) 421
Tru9I TTAA 1 cut(s) 421
TspDTI ATGAA 3 cut(s) 186, 278, 311
TspGWI ACGGA 1 cut(s) 101
Tth111I GACNNNGTC 1 cut(s) 34
VpaK11BI GGWCC 1 cut(s) 45
XmiI GTMKAC 2 cut(s) 102, 391
ZraI GACGTC 1 cut(s) 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.