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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 243 |
| AccB1I | GGYRCC | 2 cut(s) | 214, 596 |
| AccI | GTMKAC | 2 cut(s) | 498, 531 |
| AccII | CGCG | 3 cut(s) | 7, 203, 682 |
| AciI | CCGC | 3 cut(s) | 66, 244, 463 |
| AclWI | GGATC | 2 cut(s) | 706, 730 |
| AcsI | RAATTY | 2 cut(s) | 71, 135 |
| AcyI | GRCGYC | 2 cut(s) | 240, 597 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 358 |
| AgsI | TTSAA | 1 cut(s) | 106 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 571 |
| AjnI | CCWGG | 2 cut(s) | 257, 714 |
| AleI | CACNNNNGTG | 1 cut(s) | 192 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 429, 461 |
| AluBI | AGCT | 4 cut(s) | 478, 546, 580, 697 |
| AluI | AGCT | 4 cut(s) | 478, 546, 580, 697 |
| Alw21I | GWGCWC | 2 cut(s) | 548, 699 |
| AlwI | GGATC | 2 cut(s) | 706, 730 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 457, 621 |
| Ama87I | CYCGRG | 2 cut(s) | 16, 685 |
| AoxI | GGCC | 1 cut(s) | 254 |
| ApeKI | GCWGC | 3 cut(s) | 176, 457, 671 |
| ApoI | RAATTY | 2 cut(s) | 71, 135 |
| AscI | GGCGCGCC | 1 cut(s) | 5 |
| AspLEI | GCGC | 8 cut(s) | 7, 9, 203, 205, 462, 599, 682, 684 |
| AspS9I | GGNCC | 1 cut(s) | 255 |
| AsuC2I | CCSGG | 3 cut(s) | 152, 676, 781 |
| AsuHPI | GGTGA | 1 cut(s) | 236 |
| AvaI | CYCGRG | 2 cut(s) | 16, 685 |
| BanI | GGYRCC | 2 cut(s) | 214, 596 |
| BanII | GRGCYC | 2 cut(s) | 548, 699 |
| BbsI | GAAGAC | 1 cut(s) | 177 |
| Bbv12I | GWGCWC | 2 cut(s) | 548, 699 |
| BbvI | GCAGC | 3 cut(s) | 163, 444, 658 |
| BccI | CCATC | 2 cut(s) | 636, 640 |
| BceAI | ACGGC | 1 cut(s) | 190 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 158, 192 |
| BciT130I | CCWGG | 2 cut(s) | 259, 716 |
| BcnI | CCSGG | 3 cut(s) | 152, 676, 781 |
| BfmI | CTRYAG | 1 cut(s) | 763 |
| BfoI | RGCGCY | 1 cut(s) | 600 |
| BisI | GCNGC | 4 cut(s) | 177, 458, 463, 672 |
| BlsI | GCNGC | 4 cut(s) | 178, 459, 464, 673 |
| Bme1390I | CCNGG | 5 cut(s) | 152, 259, 676, 716, 781 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 571 |
| BmeT110I | CYCGRG | 2 cut(s) | 16, 685 |
| BmgT120I | GGNCC | 1 cut(s) | 255 |
| BmiI | GGNNCC | 2 cut(s) | 216, 598 |
| BmrFI | CCNGG | 5 cut(s) | 152, 259, 676, 716, 781 |
| BmrI | ACTGGG | 1 cut(s) | 631 |
| BmsI | GCATC | 2 cut(s) | 428, 444 |
| BmuI | ACTGGG | 1 cut(s) | 631 |
| BpiI | GAAGAC | 1 cut(s) | 177 |
| BpmI | CTGGAG | 3 cut(s) | 201, 724, 752 |
| Bpu10I | CCTNAGC | 1 cut(s) | 536 |
| BpuMI | CCSGG | 3 cut(s) | 152, 676, 781 |
| Bsa29I | ATCGAT | 1 cut(s) | 115 |
| BsaHI | GRCGYC | 2 cut(s) | 240, 597 |
| BsaJI | CCNNGG | 4 cut(s) | 151, 257, 675, 780 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 36, 66 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 358 |
| Bse1I | ACTGG | 3 cut(s) | 76, 136, 626 |
| BseBI | CCWGG | 2 cut(s) | 259, 716 |
| BseCI | ATCGAT | 1 cut(s) | 115 |
| BseDI | CCNNGG | 4 cut(s) | 151, 257, 675, 780 |
| BseGI | GGATG | 2 cut(s) | 443, 651 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 358 |
| BseNI | ACTGG | 3 cut(s) | 76, 136, 626 |
| BsePI | GCGCGC | 3 cut(s) | 5, 201, 680 |
| BseXI | GCAGC | 3 cut(s) | 163, 444, 658 |
| Bsh1236I | CGCG | 3 cut(s) | 7, 203, 682 |
| BshFI | GGCC | 1 cut(s) | 256 |
| BshNI | GGYRCC | 2 cut(s) | 214, 596 |
| BshVI | ATCGAT | 1 cut(s) | 115 |
| BsiHKAI | GWGCWC | 2 cut(s) | 548, 699 |
| BsiHKCI | CYCGRG | 2 cut(s) | 16, 685 |
| BsiSI | CCGG | 5 cut(s) | 124, 151, 218, 675, 780 |
| BslFI | GGGAC | 3 cut(s) | 21, 251, 632 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 358 |
| BsmFI | GGGAC | 3 cut(s) | 21, 251, 632 |
| BsnI | GGCC | 1 cut(s) | 256 |
| BsoBI | CYCGRG | 2 cut(s) | 16, 685 |
| Bsp1286I | GDGCHC | 2 cut(s) | 548, 699 |
| Bsp143I | GATC | 6 cut(s) | 90, 112, 116, 418, 711, 722 |
| BspACI | CCGC | 3 cut(s) | 66, 244, 463 |
| BspANI | GGCC | 1 cut(s) | 256 |
| BspDI | ATCGAT | 1 cut(s) | 115 |
| BspFNI | CGCG | 3 cut(s) | 7, 203, 682 |
| BspLI | GGNNCC | 2 cut(s) | 216, 598 |
| BspPI | GGATC | 2 cut(s) | 706, 730 |
| BspT107I | GGYRCC | 2 cut(s) | 214, 596 |
| BsrI | ACTGG | 3 cut(s) | 76, 136, 626 |
| BssECI | CCNNGG | 4 cut(s) | 151, 257, 675, 780 |
| BssHII | GCGCGC | 3 cut(s) | 5, 201, 680 |
| BssMI | GATC | 6 cut(s) | 90, 112, 116, 418, 711, 722 |
| BssNI | GRCGYC | 2 cut(s) | 240, 597 |
| Bst2UI | CCWGG | 2 cut(s) | 259, 716 |
| Bst4CI | ACNGT | 1 cut(s) | 224 |
| BstACI | GRCGYC | 2 cut(s) | 240, 597 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 457 |
| BstC8I | GCNNGC | 6 cut(s) | 7, 203, 294, 396, 682, 748 |
| BstDEI | CTNAG | 2 cut(s) | 536, 570 |
| BstF5I | GGATG | 2 cut(s) | 443, 651 |
| BstFNI | CGCG | 3 cut(s) | 7, 203, 682 |
| BstH2I | RGCGCY | 1 cut(s) | 600 |
| BstHHI | GCGC | 8 cut(s) | 7, 9, 203, 205, 462, 599, 682, 684 |
| BstKTI | GATC | 6 cut(s) | 93, 115, 119, 421, 714, 725 |
| BstMBI | GATC | 6 cut(s) | 90, 112, 116, 418, 711, 722 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 298, 332, 457, 677, 747 |
| BstNI | CCWGG | 2 cut(s) | 259, 716 |
| BstNSI | RCATGY | 1 cut(s) | 330 |
| BstSCI | CCNGG | 5 cut(s) | 150, 257, 674, 714, 779 |
| BstSFI | CTRYAG | 1 cut(s) | 763 |
| BstUI | CGCG | 3 cut(s) | 7, 203, 682 |
| BstV1I | GCAGC | 3 cut(s) | 163, 444, 658 |
| BstV2I | GAAGAC | 1 cut(s) | 177 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 194 |
| Bsu15I | ATCGAT | 1 cut(s) | 115 |
| BsuRI | GGCC | 1 cut(s) | 256 |
| BsuTUI | ATCGAT | 1 cut(s) | 115 |
| BtgZI | GCGATG | 1 cut(s) | 655 |
| BtsCI | GGATG | 2 cut(s) | 443, 651 |
| Cac8I | GCNNGC | 6 cut(s) | 7, 203, 294, 396, 682, 748 |
| CaiI | CAGNNNCTG | 2 cut(s) | 457, 621 |
| CfoI | GCGC | 8 cut(s) | 7, 9, 203, 205, 462, 599, 682, 684 |
| Cfr13I | GGNCC | 1 cut(s) | 255 |
| ClaI | ATCGAT | 1 cut(s) | 115 |
| CseI | GACGC | 3 cut(s) | 23, 182, 623 |
| CviAII | CATG | 3 cut(s) | 327, 356, 408 |
| DdeI | CTNAG | 2 cut(s) | 536, 570 |
| DinI | GGCGCC | 1 cut(s) | 598 |
| DpnI | GATC | 6 cut(s) | 92, 114, 118, 420, 713, 724 |
| DpnII | GATC | 6 cut(s) | 90, 112, 116, 418, 711, 722 |
| DriI | GACNNNNNGTC | 1 cut(s) | 571 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 571 |
| EciI | GGCGGA | 1 cut(s) | 55 |
| Ecl136II | GAGCTC | 2 cut(s) | 546, 697 |
| Eco24I | GRGCYC | 2 cut(s) | 548, 699 |
| Eco53kI | GAGCTC | 2 cut(s) | 546, 697 |
| Eco88I | CYCGRG | 2 cut(s) | 16, 685 |
| EcoICRI | GAGCTC | 2 cut(s) | 546, 697 |
| EcoRI | GAATTC | 2 cut(s) | 71, 135 |
| EcoRII | CCWGG | 2 cut(s) | 257, 714 |
| EcoT38I | GRGCYC | 2 cut(s) | 548, 699 |
| EgeI | GGCGCC | 1 cut(s) | 598 |
| EheI | GGCGCC | 1 cut(s) | 598 |
| FaeI | CATG | 3 cut(s) | 330, 359, 411 |
| FaiI | YATR | 5 cut(s) | 285, 317, 328, 357, 409 |
| FaqI | GGGAC | 3 cut(s) | 21, 251, 632 |
| FatI | CATG | 3 cut(s) | 326, 355, 407 |
| FblI | GTMKAC | 2 cut(s) | 498, 531 |
| Fnu4HI | GCNGC | 4 cut(s) | 177, 458, 463, 672 |
| FokI | GGATG | 2 cut(s) | 450, 658 |
| FriOI | GRGCYC | 2 cut(s) | 548, 699 |
| Fsp4HI | GCNGC | 4 cut(s) | 177, 458, 463, 672 |
| GlaI | GCGC | 8 cut(s) | 6, 8, 202, 204, 461, 598, 681, 683 |
| GluI | GCNGC | 4 cut(s) | 177, 458, 463, 672 |
| GsuI | CTGGAG | 3 cut(s) | 201, 724, 752 |
| HaeII | RGCGCY | 1 cut(s) | 600 |
| HaeIII | GGCC | 1 cut(s) | 256 |
| HapII | CCGG | 5 cut(s) | 124, 151, 218, 675, 780 |
| HgaI | GACGC | 3 cut(s) | 23, 182, 623 |
| HhaI | GCGC | 8 cut(s) | 7, 9, 203, 205, 462, 599, 682, 684 |
| Hin1I | GRCGYC | 2 cut(s) | 240, 597 |
| Hin1II | CATG | 3 cut(s) | 330, 359, 411 |
| Hin6I | GCGC | 8 cut(s) | 5, 7, 201, 203, 460, 597, 680, 682 |
| HinP1I | GCGC | 8 cut(s) | 5, 7, 201, 203, 460, 597, 680, 682 |
| HincII | GTYRAC | 3 cut(s) | 499, 532, 565 |
| HindII | GTYRAC | 3 cut(s) | 499, 532, 565 |
| HinfI | GANTC | 5 cut(s) | 24, 62, 145, 183, 275 |
| HpaII | CCGG | 5 cut(s) | 124, 151, 218, 675, 780 |
| HphI | GGTGA | 1 cut(s) | 236 |
| Hpy166II | GTNNAC | 4 cut(s) | 187, 499, 532, 565 |
| Hpy188I | TCNGA | 3 cut(s) | 414, 577, 607 |
| Hpy188III | TCNNGA | 2 cut(s) | 422, 482 |
| Hpy8I | GTNNAC | 4 cut(s) | 187, 499, 532, 565 |
| Hpy99I | CGWCG | 9 cut(s) | 144, 387, 437, 476, 500, 503, 530, 533, 639 |
| HpyAV | CCTTC | 3 cut(s) | 370, 565, 730 |
| HpyCH4III | ACNGT | 1 cut(s) | 224 |
| HpyCH4IV | ACGT | 2 cut(s) | 240, 364 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 298, 332, 457, 677, 747 |
| HpyF3I | CTNAG | 2 cut(s) | 536, 570 |
| HpySE526I | ACGT | 2 cut(s) | 240, 364 |
| Hsp92I | GRCGYC | 2 cut(s) | 240, 597 |
| Hsp92II | CATG | 3 cut(s) | 330, 359, 411 |
| HspAI | GCGC | 8 cut(s) | 5, 7, 201, 203, 460, 597, 680, 682 |
| KasI | GGCGCC | 1 cut(s) | 596 |
| Kzo9I | GATC | 6 cut(s) | 90, 112, 116, 418, 711, 722 |
| Lsp1109I | GCAGC | 3 cut(s) | 163, 444, 658 |
| LweI | GCATC | 2 cut(s) | 428, 444 |
| MaeII | ACGT | 2 cut(s) | 240, 364 |
| MalI | GATC | 6 cut(s) | 92, 114, 118, 420, 713, 724 |
| MboI | GATC | 6 cut(s) | 90, 112, 116, 418, 711, 722 |
| MboII | GAAGA | 4 cut(s) | 182, 239, 543, 550 |
| MhlI | GDGCHC | 2 cut(s) | 548, 699 |
| MluCI | AATT | 3 cut(s) | 71, 135, 339 |
| Mly113I | GGCGCC | 1 cut(s) | 597 |
| MlyI | GAGTC | 4 cut(s) | 18, 71, 139, 192 |
| MmeI | TCCRAC | 2 cut(s) | 52, 353 |
| MseI | TTAA | 2 cut(s) | 251, 510 |
| MslI | CAYNNNNRTG | 2 cut(s) | 192, 320 |
| MspI | CCGG | 5 cut(s) | 124, 151, 218, 675, 780 |
| MspR9I | CCNGG | 5 cut(s) | 152, 259, 676, 716, 781 |
| MvaI | CCWGG | 2 cut(s) | 259, 716 |
| MvnI | CGCG | 3 cut(s) | 7, 203, 682 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 298, 332, 457, 677, 747 |
| NarI | GGCGCC | 1 cut(s) | 597 |
| NciI | CCSGG | 3 cut(s) | 152, 676, 781 |
| NdeII | GATC | 6 cut(s) | 90, 112, 116, 418, 711, 722 |
| NlaIII | CATG | 3 cut(s) | 330, 359, 411 |
| NlaIV | GGNNCC | 2 cut(s) | 216, 598 |
| NmeAIII | GCCGAG | 2 cut(s) | 678, 683 |
| NspI | RCATGY | 1 cut(s) | 330 |
| OliI | CACNNNNGTG | 1 cut(s) | 192 |
| PalAI | GGCGCGCC | 1 cut(s) | 5 |
| PauI | GCGCGC | 3 cut(s) | 5, 201, 680 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 66, 480 |
| PfeI | GAWTC | 1 cut(s) | 275 |
| PflFI | GACNNNGTC | 2 cut(s) | 408, 494 |
| PkrI | GCNGC | 4 cut(s) | 178, 459, 464, 673 |
| PleI | GAGTC | 4 cut(s) | 18, 70, 139, 191 |
| PluTI | GGCGCC | 1 cut(s) | 600 |
| PpsI | GAGTC | 4 cut(s) | 18, 70, 139, 191 |
| Psp124BI | GAGCTC | 2 cut(s) | 548, 699 |
| Psp6I | CCWGG | 2 cut(s) | 257, 714 |
| PspGI | CCWGG | 2 cut(s) | 257, 714 |
| PspN4I | GGNNCC | 2 cut(s) | 216, 598 |
| PspPI | GGNCC | 1 cut(s) | 255 |
| PstNI | CAGNNNCTG | 2 cut(s) | 457, 621 |
| PsyI | GACNNNGTC | 2 cut(s) | 408, 494 |
| PteI | GCGCGC | 3 cut(s) | 5, 201, 680 |
| RseI | CAYNNNNRTG | 2 cut(s) | 192, 320 |
| SacI | GAGCTC | 2 cut(s) | 548, 699 |
| SalI | GTCGAC | 2 cut(s) | 497, 530 |
| SaqAI | TTAA | 2 cut(s) | 251, 510 |
| SatI | GCNGC | 4 cut(s) | 177, 458, 463, 672 |
| Sau3AI | GATC | 6 cut(s) | 90, 112, 116, 418, 711, 722 |
| Sau96I | GGNCC | 1 cut(s) | 255 |
| SchI | GAGTC | 4 cut(s) | 18, 71, 139, 192 |
| ScrFI | CCNGG | 5 cut(s) | 152, 259, 676, 716, 781 |
| SduI | GDGCHC | 2 cut(s) | 548, 699 |
| SfaNI | GCATC | 2 cut(s) | 428, 444 |
| SfcI | CTRYAG | 1 cut(s) | 763 |
| SfoI | GGCGCC | 1 cut(s) | 598 |
| SgrDI | CGTCGACG | 1 cut(s) | 497 |
| SgsI | GGCGCGCC | 1 cut(s) | 5 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 192, 320 |
| Sse9I | AATT | 3 cut(s) | 71, 135, 339 |
| SsiI | CCGC | 3 cut(s) | 66, 244, 463 |
| SspDI | GGCGCC | 1 cut(s) | 596 |
| SstI | GAGCTC | 2 cut(s) | 548, 699 |
| StyD4I | CCNGG | 5 cut(s) | 150, 257, 674, 714, 779 |
| TaaI | ACNGT | 1 cut(s) | 224 |
| TaiI | ACGT | 2 cut(s) | 243, 367 |
| TaqI | TCGA | 7 cut(s) | 115, 139, 168, 331, 483, 498, 531 |
| TasI | AATT | 3 cut(s) | 71, 135, 339 |
| TauI | GCSGC | 1 cut(s) | 465 |
| TfiI | GAWTC | 1 cut(s) | 275 |
| Tru1I | TTAA | 2 cut(s) | 251, 510 |
| Tru9I | TTAA | 2 cut(s) | 251, 510 |
| TseI | GCWGC | 3 cut(s) | 176, 457, 671 |
| TspDTI | ATGAA | 1 cut(s) | 304 |
| TspGWI | ACGGA | 3 cut(s) | 157, 247, 450 |
| Tth111I | GACNNNGTC | 2 cut(s) | 408, 494 |
| XapI | RAATTY | 2 cut(s) | 71, 135 |
| XceI | RCATGY | 1 cut(s) | 330 |
| XmiI | GTMKAC | 2 cut(s) | 498, 531 |
| ZraI | GACGTC | 1 cut(s) | 241 |