FvH4_5g09371

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000118
Physical Location & Seq
Forward (+)
5417682 .. 5418833
1152 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g09371.t1

Sequence Viewer

Length: 363 bp
ATGGGAACTCAATATGATCATAGGCAAGGTCTAGAACAATTGGATTGCGAGGAATTGTTTGGAAGGGAGGAGGGAAAGCTTCAATCCGCGCACCACCTCTCACATTTAAATCTCCAACAGCAGATTGACAGATTCGAGCGTCCCCGACCACCTTCCCTCCCCGGCGAGTCCGTTTTCTCCAGTTTTCCTGCGAGATCGACTTTGTTTGAAGTTTTGGGTGATCTTGCCGGAAAACTGGAAAAGAATGGACTCGCCAGGGAGGGAAGGTGGTCGGAGACGTTGCTGCCTGCTGGAGTCTTCTGGGGTGGAGACGCGTCGTCACCGGTGCCGGAGGGTGAAGAACGGACAGACGTCAGCATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

121

Amino Acids

13.36

Weight (kDa)

4.92

Isoelectric Point (pI)

64.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000118)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01361 FvH4_1g07161 FvH4_1g07431 FvH4_1g07821 FvH4_1g08223 FvH4_1g10041 FvH4_1g12132 FvH4_1g15053 FvH4_1g18161 FvH4_1g18400 FvH4_1g18931 FvH4_1g19242 FvH4_1g19461 FvH4_1g20550 FvH4_1g21381 FvH4_1g21542 FvH4_1g22102 FvH4_1g23991 FvH4_1g24542 FvH4_1g24951 FvH4_1g24960 FvH4_1g25272 FvH4_1g25552 FvH4_1g25771 FvH4_1g28771 FvH4_1g29201 FvH4_1g29611 FvH4_2g01181 FvH4_2g02491 FvH4_2g04621 FvH4_2g04631 FvH4_2g07460 FvH4_2g08540 FvH4_2g08550 FvH4_2g09292 FvH4_2g10501 FvH4_2g12101 FvH4_2g12220 FvH4_2g12551 FvH4_2g14071 FvH4_2g14241 FvH4_2g15041 FvH4_2g15311 FvH4_2g18971 FvH4_2g19220 FvH4_2g19260 FvH4_2g19611 FvH4_2g19652 FvH4_2g20211 FvH4_2g20231 FvH4_2g21541 FvH4_2g22380 FvH4_2g27712 FvH4_2g28171 FvH4_2g29879 FvH4_2g32391 FvH4_3g02171 FvH4_3g05531 FvH4_3g09750 FvH4_3g10310 FvH4_3g10460 FvH4_3g13172 FvH4_3g15232 FvH4_3g18481 FvH4_3g18621 FvH4_3g20504 FvH4_3g20812 FvH4_3g22320 FvH4_3g22930 FvH4_3g22940 FvH4_3g23752 FvH4_3g24791 FvH4_3g26411 FvH4_3g26432 FvH4_3g27201 FvH4_3g27862 FvH4_3g28871 FvH4_3g28954 FvH4_3g29131 FvH4_3g29832 FvH4_3g29922 FvH4_3g30190 FvH4_3g32231 FvH4_3g32250 FvH4_3g33460 FvH4_3g34670 FvH4_3g36982 FvH4_3g37001 FvH4_3g38252 FvH4_3g38772 FvH4_3g40141 FvH4_3g40181 FvH4_3g42521 FvH4_4g00090 FvH4_4g00290 FvH4_4g00301 FvH4_4g00530 FvH4_4g00823 FvH4_4g02300 FvH4_4g02450 FvH4_4g03360 FvH4_4g04481 FvH4_4g04761 FvH4_4g06301 FvH4_4g06630 FvH4_4g08312 FvH4_4g08552 FvH4_4g10053 FvH4_4g11971 FvH4_4g13211 FvH4_4g13511 FvH4_4g15351 FvH4_4g16360 FvH4_4g16601 FvH4_4g18462 FvH4_4g22911 FvH4_4g23221 FvH4_4g24301 FvH4_4g24721 FvH4_4g27905 FvH4_4g28971 FvH4_4g29540 FvH4_4g30720 FvH4_4g31521 FvH4_4g33371 FvH4_4g34111 FvH4_4g35740 FvH4_5g00131 FvH4_5g02530 FvH4_5g02550 FvH4_5g02560 FvH4_5g02580 FvH4_5g03783 FvH4_5g05681 FvH4_5g05681 FvH4_5g09371 FvH4_5g09381 FvH4_5g14611 FvH4_5g15341 FvH4_5g19801 FvH4_5g20110 FvH4_5g20911 FvH4_5g22230 FvH4_5g25751 FvH4_5g26070 FvH4_5g26471 FvH4_5g27072 FvH4_5g27471 FvH4_5g27471 FvH4_5g27998 FvH4_5g28291 FvH4_5g30951 FvH4_5g31082 FvH4_5g31890 FvH4_5g32251 FvH4_5g34112 FvH4_5g37184 FvH4_5g37993 FvH4_5g38271 FvH4_6g00153 FvH4_6g00640 FvH4_6g05921 FvH4_6g08591 FvH4_6g09511 FvH4_6g10331 FvH4_6g10401 FvH4_6g14161 FvH4_6g14171 FvH4_6g18481 FvH4_6g19721 FvH4_6g19980 FvH4_6g20104 FvH4_6g20112 FvH4_6g21261 FvH4_6g21651 FvH4_6g22051 FvH4_6g23141 FvH4_6g24822 FvH4_6g25082 FvH4_6g25391 FvH4_6g25560 FvH4_6g26350 FvH4_6g27031 FvH4_6g27810 FvH4_6g27971 FvH4_6g28331 FvH4_6g29391 FvH4_6g30781 FvH4_6g32221 FvH4_6g34680 FvH4_6g36181 FvH4_6g36551 FvH4_6g37491 FvH4_6g37663 FvH4_6g39590 FvH4_6g40582 FvH4_6g43843 FvH4_6g50551 FvH4_7g00240 FvH4_7g00731 FvH4_7g01031 FvH4_7g03301 FvH4_7g08180 FvH4_7g08180 FvH4_7g10631 FvH4_7g19710 FvH4_7g23892 FvH4_7g25280 FvH4_7g25551 FvH4_7g30121 FvH4_7g31931 FvH4_7g32672 FvH4_c21g00040 FvH4_c2g00053
prunus_persica Prupe.1G448800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322451 RchiOBHm_Chr5g0015171
rosa_laevigata RLG00000003077 RLG00000018186 RLG00000030343
rosa_multiflora Rmu_co8096726.1_g000001
rosa_roxburghii Rroxscaffold_157G00438380 Rroxscaffold_1G00001730 Rroxscaffold_3G00236310
rosa_rugosa Rorug02G0236500
rosa_samantha Rh4BG247300 Rh6BG286200 Rh6CG287300 Rh7DG257500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 354
AccB1I GGYRCC 1 cut(s) 325
AccII CGCG 2 cut(s) 89, 314
AciI CCGC 1 cut(s) 87
AcyI GRCGYC 1 cut(s) 351
AflIII ACRYGT 1 cut(s) 312
AgeI ACCGGT 1 cut(s) 322
AgsI TTSAA 2 cut(s) 83, 209
AhdI GACNNNNNGTC 1 cut(s) 316
AjnI CCWGG 1 cut(s) 254
AluBI AGCT 1 cut(s) 79
AluI AGCT 1 cut(s) 79
Alw26I GTCTC 2 cut(s) 269, 303
ApeKI GCWGC 1 cut(s) 283
AsiGI ACCGGT 1 cut(s) 322
AspLEI GCGC 1 cut(s) 91
AsuC2I CCSGG 1 cut(s) 162
AsuHPI GGTGA 3 cut(s) 230, 312, 347
BanI GGYRCC 1 cut(s) 325
BbsI GAAGAC 1 cut(s) 289
BbvI GCAGC 1 cut(s) 270
BciT130I CCWGG 1 cut(s) 256
BclI TGATCA 1 cut(s) 16
BcnI CCSGG 1 cut(s) 162
BcoDI GTCTC 2 cut(s) 269, 303
BfaI CTAG 1 cut(s) 32
BisI GCNGC 1 cut(s) 284
BlsI GCNGC 1 cut(s) 285
Bme1390I CCNGG 2 cut(s) 162, 256
BmeRI GACNNNNNGTC 1 cut(s) 316
BmiI GGNNCC 1 cut(s) 327
BmrFI CCNGG 2 cut(s) 162, 256
BoxI GACNNNNGTC 1 cut(s) 350
BpiI GAAGAC 1 cut(s) 289
BpmI CTGGAG 2 cut(s) 163, 312
BpuMI CCSGG 1 cut(s) 162
BsaHI GRCGYC 1 cut(s) 351
BsaJI CCNNGG 2 cut(s) 160, 255
BsaWI WCCGGW 1 cut(s) 322
BsaXI ACNNNNNCTCC 4 cut(s) 141, 171, 251, 281
Bse118I RCCGGY 1 cut(s) 322
Bse1I ACTGG 2 cut(s) 180, 240
BseBI CCWGG 1 cut(s) 256
BseDI CCNNGG 2 cut(s) 160, 255
BseNI ACTGG 2 cut(s) 180, 240
BseRI GAGGAG 1 cut(s) 83
BseXI GCAGC 1 cut(s) 270
Bsh1236I CGCG 2 cut(s) 89, 314
BshNI GGYRCC 1 cut(s) 325
BshTI ACCGGT 1 cut(s) 322
BsiSI CCGG 4 cut(s) 162, 228, 323, 329
BslFI GGGAC 1 cut(s) 126
BsmAI GTCTC 2 cut(s) 269, 303
BsmBI CGTCTC 2 cut(s) 269, 303
BsmFI GGGAC 1 cut(s) 126
Bsp143I GATC 3 cut(s) 16, 194, 220
BspACI CCGC 1 cut(s) 87
BspFNI CGCG 2 cut(s) 89, 314
BspLI GGNNCC 1 cut(s) 327
BspT107I GGYRCC 1 cut(s) 325
BsrFI RCCGGY 1 cut(s) 322
BsrI ACTGG 2 cut(s) 180, 240
BssAI RCCGGY 1 cut(s) 322
BssECI CCNNGG 2 cut(s) 160, 255
BssMI GATC 3 cut(s) 16, 194, 220
BssNI GRCGYC 1 cut(s) 351
Bst2UI CCWGG 1 cut(s) 256
BstACI GRCGYC 1 cut(s) 351
BstC8I GCNNGC 1 cut(s) 288
BstFNI CGCG 2 cut(s) 89, 314
BstHHI GCGC 1 cut(s) 91
BstKTI GATC 3 cut(s) 19, 197, 223
BstMAI GTCTC 2 cut(s) 269, 303
BstMBI GATC 3 cut(s) 16, 194, 220
BstNI CCWGG 1 cut(s) 256
BstPAI GACNNNNGTC 1 cut(s) 350
BstSCI CCNGG 2 cut(s) 160, 254
BstUI CGCG 2 cut(s) 89, 314
BstV1I GCAGC 1 cut(s) 270
BstV2I GAAGAC 1 cut(s) 289
Cac8I GCNNGC 1 cut(s) 288
CfoI GCGC 1 cut(s) 91
Cfr10I RCCGGY 1 cut(s) 322
CseI GACGC 3 cut(s) 128, 303, 320
CspAI ACCGGT 1 cut(s) 322
CviJI RGCY 1 cut(s) 79
CviKI_1 RGCY 1 cut(s) 79
DpnI GATC 3 cut(s) 18, 196, 222
DpnII GATC 3 cut(s) 16, 194, 220
DraI TTTAAA 1 cut(s) 108
DriI GACNNNNNGTC 1 cut(s) 316
Eam1105I GACNNNNNGTC 1 cut(s) 316
EcoRII CCWGG 1 cut(s) 254
Esp3I CGTCTC 2 cut(s) 269, 303
FaiI YATR 2 cut(s) 15, 21
FaqI GGGAC 1 cut(s) 126
FbaI TGATCA 1 cut(s) 16
Fnu4HI GCNGC 1 cut(s) 284
Fsp4HI GCNGC 1 cut(s) 284
FspBI CTAG 1 cut(s) 32
GlaI GCGC 1 cut(s) 90
GluI GCNGC 1 cut(s) 284
GsuI CTGGAG 2 cut(s) 163, 312
HapII CCGG 4 cut(s) 162, 228, 323, 329
HgaI GACGC 3 cut(s) 128, 303, 320
HhaI GCGC 1 cut(s) 91
Hin1I GRCGYC 1 cut(s) 351
Hin6I GCGC 1 cut(s) 89
HinP1I GCGC 1 cut(s) 89
HindIII AAGCTT 1 cut(s) 77
HinfI GANTC 4 cut(s) 132, 167, 249, 294
HpaII CCGG 4 cut(s) 162, 228, 323, 329
HphI GGTGA 3 cut(s) 230, 312, 347
Hpy188I TCNGA 1 cut(s) 274
Hpy188III TCNNGA 1 cut(s) 32
Hpy99I CGWCG 1 cut(s) 319
HpyAV CCTTC 3 cut(s) 57, 162, 258
HpyCH4IV ACGT 2 cut(s) 278, 351
HpySE526I ACGT 2 cut(s) 278, 351
Hsp92I GRCGYC 1 cut(s) 351
HspAI GCGC 1 cut(s) 89
Ksp22I TGATCA 1 cut(s) 16
Kzo9I GATC 3 cut(s) 16, 194, 220
Lsp1109I GCAGC 1 cut(s) 270
MaeI CTAG 1 cut(s) 32
MaeII ACGT 2 cut(s) 278, 351
MaeIII GTNAC 1 cut(s) 318
MalI GATC 3 cut(s) 18, 196, 222
MboI GATC 3 cut(s) 16, 194, 220
MboII GAAGA 2 cut(s) 289, 350
MfeI CAATTG 1 cut(s) 38
MluCI AATT 2 cut(s) 38, 53
MluI ACGCGT 1 cut(s) 312
MlyI GAGTC 3 cut(s) 176, 243, 303
MmeI TCCRAC 2 cut(s) 139, 252
MnlI CCTC 7 cut(s) 43, 61, 64, 107, 167, 253, 325
MseI TTAA 2 cut(s) 107, 361
MspI CCGG 4 cut(s) 162, 228, 323, 329
MspR9I CCNGG 2 cut(s) 162, 256
MunI CAATTG 1 cut(s) 38
MvaI CCWGG 1 cut(s) 256
MvnI CGCG 2 cut(s) 89, 314
NciI CCSGG 1 cut(s) 162
NdeII GATC 3 cut(s) 16, 194, 220
NlaIV GGNNCC 1 cut(s) 327
NmuCI GTSAC 1 cut(s) 318
PfeI GAWTC 1 cut(s) 132
PinAI ACCGGT 1 cut(s) 322
PkrI GCNGC 1 cut(s) 285
PleI GAGTC 3 cut(s) 175, 243, 302
PpsI GAGTC 3 cut(s) 175, 243, 302
PshAI GACNNNNGTC 1 cut(s) 350
Psp6I CCWGG 1 cut(s) 254
PspGI CCWGG 1 cut(s) 254
PspN4I GGNNCC 1 cut(s) 327
SaqAI TTAA 2 cut(s) 107, 361
SatI GCNGC 1 cut(s) 284
Sau3AI GATC 3 cut(s) 16, 194, 220
SchI GAGTC 3 cut(s) 176, 243, 303
ScrFI CCNGG 2 cut(s) 162, 256
SetI ASST 7 cut(s) 31, 81, 99, 154, 269, 281, 354
SgrAI CRCCGGYG 1 cut(s) 322
SmiI ATTTAAAT 1 cut(s) 108
Sse9I AATT 2 cut(s) 38, 53
SsiI CCGC 1 cut(s) 87
SspMI CTAG 1 cut(s) 32
StyD4I CCNGG 2 cut(s) 160, 254
SwaI ATTTAAAT 1 cut(s) 108
TaiI ACGT 2 cut(s) 281, 354
TaqI TCGA 2 cut(s) 135, 197
TasI AATT 2 cut(s) 38, 53
TfiI GAWTC 1 cut(s) 132
Tru1I TTAA 2 cut(s) 107, 361
Tru9I TTAA 2 cut(s) 107, 361
TseFI GTSAC 1 cut(s) 318
TseI GCWGC 1 cut(s) 283
Tsp45I GTSAC 1 cut(s) 318
TspGWI ACGGA 2 cut(s) 160, 358
XbaI TCTAGA 1 cut(s) 31
XspI CTAG 1 cut(s) 32
ZraI GACGTC 1 cut(s) 352
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.