FvH4_6g32221

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000118
Physical Location & Seq
Forward (+)
25278148 .. 25279799
1652 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g32221.t1

Sequence Viewer

Length: 429 bp
ATGCCGAAGACGACGGTCACGACGCCGAGCTCGAAAAAGCCCATCATTAGTTTCCGCCACGTCATCGACTCGTTTCTCGGTGGGCCCCACCTTTTCATGTCGGGTCATGCCTGTTTCCTGGTCGGGTCCCGCGGACCCTCCTGTGGTGGTCACGTGCGATGTAGAGATCTAAAGAGGACGTCCGCACAGCCCTTAAAGTGCGGACGTCTCTCCGTTCTCCACCGTACGGATCTGACGACGGCGCGCCTCCACCCTAGCGGCCTCCAGCAGCGTCTCCGATCACTTTCCCTCCCCGGCGAGTCCGCCAAATTCCAGTTTTCCGGCGAGATCACCCAAAACTTCAAACAAAATCGATCTTGCCAGAAAATTGGAATTCGGCGGACTCGCCGGGGAGGGAAAGTGATCAAAGACGCTGCTGGAGGCCGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

143

Amino Acids

15.56

Weight (kDa)

11.56

Isoelectric Point (pI)

53.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000118)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01361 FvH4_1g07161 FvH4_1g07431 FvH4_1g07821 FvH4_1g08223 FvH4_1g10041 FvH4_1g12132 FvH4_1g15053 FvH4_1g18161 FvH4_1g18400 FvH4_1g18931 FvH4_1g19242 FvH4_1g19461 FvH4_1g20550 FvH4_1g21381 FvH4_1g21542 FvH4_1g22102 FvH4_1g23991 FvH4_1g24542 FvH4_1g24951 FvH4_1g24960 FvH4_1g25272 FvH4_1g25552 FvH4_1g25771 FvH4_1g28771 FvH4_1g29201 FvH4_1g29611 FvH4_2g01181 FvH4_2g02491 FvH4_2g04621 FvH4_2g04631 FvH4_2g07460 FvH4_2g08540 FvH4_2g08550 FvH4_2g09292 FvH4_2g10501 FvH4_2g12101 FvH4_2g12220 FvH4_2g12551 FvH4_2g14071 FvH4_2g14241 FvH4_2g15041 FvH4_2g15311 FvH4_2g18971 FvH4_2g19220 FvH4_2g19260 FvH4_2g19611 FvH4_2g19652 FvH4_2g20211 FvH4_2g20231 FvH4_2g21541 FvH4_2g22380 FvH4_2g27712 FvH4_2g28171 FvH4_2g29879 FvH4_2g32391 FvH4_3g02171 FvH4_3g05531 FvH4_3g09750 FvH4_3g10310 FvH4_3g10460 FvH4_3g13172 FvH4_3g15232 FvH4_3g18481 FvH4_3g18621 FvH4_3g20504 FvH4_3g20812 FvH4_3g22320 FvH4_3g22930 FvH4_3g22940 FvH4_3g23752 FvH4_3g24791 FvH4_3g26411 FvH4_3g26432 FvH4_3g27201 FvH4_3g27862 FvH4_3g28871 FvH4_3g28954 FvH4_3g29131 FvH4_3g29832 FvH4_3g29922 FvH4_3g30190 FvH4_3g32231 FvH4_3g32250 FvH4_3g33460 FvH4_3g34670 FvH4_3g36982 FvH4_3g37001 FvH4_3g38252 FvH4_3g38772 FvH4_3g40141 FvH4_3g40181 FvH4_3g42521 FvH4_4g00090 FvH4_4g00290 FvH4_4g00301 FvH4_4g00530 FvH4_4g00823 FvH4_4g02300 FvH4_4g02450 FvH4_4g03360 FvH4_4g04481 FvH4_4g04761 FvH4_4g06301 FvH4_4g06630 FvH4_4g08312 FvH4_4g08552 FvH4_4g10053 FvH4_4g11971 FvH4_4g13211 FvH4_4g13511 FvH4_4g15351 FvH4_4g16360 FvH4_4g16601 FvH4_4g18462 FvH4_4g22911 FvH4_4g23221 FvH4_4g24301 FvH4_4g24721 FvH4_4g27905 FvH4_4g28971 FvH4_4g29540 FvH4_4g30720 FvH4_4g31521 FvH4_4g33371 FvH4_4g34111 FvH4_4g35740 FvH4_5g00131 FvH4_5g02530 FvH4_5g02550 FvH4_5g02560 FvH4_5g02580 FvH4_5g03783 FvH4_5g05681 FvH4_5g05681 FvH4_5g09371 FvH4_5g09381 FvH4_5g14611 FvH4_5g15341 FvH4_5g19801 FvH4_5g20110 FvH4_5g20911 FvH4_5g22230 FvH4_5g25751 FvH4_5g26070 FvH4_5g26471 FvH4_5g27072 FvH4_5g27471 FvH4_5g27471 FvH4_5g27998 FvH4_5g28291 FvH4_5g30951 FvH4_5g31082 FvH4_5g31890 FvH4_5g32251 FvH4_5g34112 FvH4_5g37184 FvH4_5g37993 FvH4_5g38271 FvH4_6g00153 FvH4_6g00640 FvH4_6g05921 FvH4_6g08591 FvH4_6g09511 FvH4_6g10331 FvH4_6g10401 FvH4_6g14161 FvH4_6g14171 FvH4_6g18481 FvH4_6g19721 FvH4_6g19980 FvH4_6g20104 FvH4_6g20112 FvH4_6g21261 FvH4_6g21651 FvH4_6g22051 FvH4_6g23141 FvH4_6g24822 FvH4_6g25082 FvH4_6g25391 FvH4_6g25560 FvH4_6g26350 FvH4_6g27031 FvH4_6g27810 FvH4_6g27971 FvH4_6g28331 FvH4_6g29391 FvH4_6g30781 FvH4_6g32221 FvH4_6g34680 FvH4_6g36181 FvH4_6g36551 FvH4_6g37491 FvH4_6g37663 FvH4_6g39590 FvH4_6g40582 FvH4_6g43843 FvH4_6g50551 FvH4_7g00240 FvH4_7g00731 FvH4_7g01031 FvH4_7g03301 FvH4_7g08180 FvH4_7g08180 FvH4_7g10631 FvH4_7g19710 FvH4_7g23892 FvH4_7g25280 FvH4_7g25551 FvH4_7g30121 FvH4_7g31931 FvH4_7g32672 FvH4_c21g00040 FvH4_c2g00053
prunus_persica Prupe.1G448800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322451 RchiOBHm_Chr5g0015171
rosa_laevigata RLG00000003077 RLG00000018186 RLG00000030343
rosa_multiflora Rmu_co8096726.1_g000001
rosa_roxburghii Rroxscaffold_157G00438380 Rroxscaffold_1G00001730 Rroxscaffold_3G00236310
rosa_rugosa Rorug02G0236500
rosa_samantha Rh4BG247300 Rh6BG286200 Rh6CG287300 Rh7DG257500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 182, 208
AccII CGCG 2 cut(s) 132, 244
AciI CCGC 9 cut(s) 55, 130, 132, 183, 201, 258, 303, 379, 424
AclWI GGATC 1 cut(s) 237
AcsI RAATTY 2 cut(s) 308, 372
AcvI CACGTG 1 cut(s) 154
AcyI GRCGYC 3 cut(s) 23, 179, 205
AfaI GTAC 1 cut(s) 226
AfiI CCNNNNNNNGG 2 cut(s) 143, 226
AgsI TTSAA 1 cut(s) 343
AjiI CACGTC 1 cut(s) 61
AjnI CCWGG 1 cut(s) 117
AluBI AGCT 1 cut(s) 30
AluI AGCT 1 cut(s) 30
Alw21I GWGCWC 1 cut(s) 32
Alw26I GTCTC 2 cut(s) 212, 278
AlwI GGATC 1 cut(s) 237
AoxI GGCC 3 cut(s) 83, 259, 421
ApaI GGGCCC 1 cut(s) 87
ApeKI GCWGC 2 cut(s) 268, 413
ApoI RAATTY 2 cut(s) 308, 372
AscI GGCGCGCC 1 cut(s) 242
AspLEI GCGC 2 cut(s) 244, 246
AspS9I GGNCC 4 cut(s) 83, 84, 126, 134
AsuC2I CCSGG 2 cut(s) 294, 389
AsuHPI GGTGA 1 cut(s) 322
AvaII GGWCC 2 cut(s) 126, 134
BaeGI GKGCMC 1 cut(s) 87
BanII GRGCYC 2 cut(s) 32, 87
BbrPI CACGTG 1 cut(s) 154
BbsI GAAGAC 1 cut(s) 14
Bbv12I GWGCWC 1 cut(s) 32
BbvI GCAGC 2 cut(s) 280, 400
BccI CCATC 1 cut(s) 50
BceAI ACGGC 1 cut(s) 255
BciT130I CCWGG 1 cut(s) 119
BclI TGATCA 1 cut(s) 402
BcnI CCSGG 2 cut(s) 294, 389
BcoDI GTCTC 2 cut(s) 212, 278
BfaI CTAG 2 cut(s) 255, 427
BglII AGATCT 1 cut(s) 166
BisI GCNGC 4 cut(s) 259, 269, 414, 424
BlsI GCNGC 4 cut(s) 260, 270, 415, 425
Bme1390I CCNGG 3 cut(s) 119, 294, 389
Bme18I GGWCC 2 cut(s) 126, 134
BmgBI CACGTC 1 cut(s) 61
BmgT120I GGNCC 4 cut(s) 83, 84, 126, 134
BmiI GGNNCC 5 cut(s) 85, 86, 127, 128, 136
BmrFI CCNGG 3 cut(s) 119, 294, 389
BoxI GACNNNNGTC 1 cut(s) 14
BpiI GAAGAC 1 cut(s) 14
BpmI CTGGAG 1 cut(s) 248
BpuMI CCSGG 2 cut(s) 294, 389
Bsa29I ATCGAT 1 cut(s) 352
BsaAI YACGTR 1 cut(s) 154
BsaHI GRCGYC 3 cut(s) 23, 179, 205
BsaJI CCNNGG 3 cut(s) 130, 292, 388
BsaXI ACNNNNNCTCC 4 cut(s) 273, 303, 384, 414
Bsc4I CCNNNNNNNGG 2 cut(s) 143, 226
Bse1I ACTGG 1 cut(s) 313
BseBI CCWGG 1 cut(s) 119
BseCI ATCGAT 1 cut(s) 352
BseDI CCNNGG 3 cut(s) 130, 292, 388
BseLI CCNNNNNNNGG 2 cut(s) 143, 226
BseNI ACTGG 1 cut(s) 313
BsePI GCGCGC 1 cut(s) 242
BseSI GKGCMC 1 cut(s) 87
BseXI GCAGC 2 cut(s) 280, 400
Bsh1236I CGCG 2 cut(s) 132, 244
BshFI GGCC 3 cut(s) 85, 261, 423
BshVI ATCGAT 1 cut(s) 352
BsiHKAI GWGCWC 1 cut(s) 32
BsiSI CCGG 3 cut(s) 294, 321, 388
BsiWI CGTACG 1 cut(s) 224
BslFI GGGAC 1 cut(s) 112
BslI CCNNNNNNNGG 2 cut(s) 143, 226
BsmAI GTCTC 2 cut(s) 212, 278
BsmBI CGTCTC 2 cut(s) 212, 278
BsmFI GGGAC 1 cut(s) 112
BsnI GGCC 3 cut(s) 85, 261, 423
Bsp120I GGGCCC 1 cut(s) 83
Bsp1286I GDGCHC 2 cut(s) 32, 87
Bsp143I GATC 6 cut(s) 166, 229, 278, 327, 353, 402
BspACI CCGC 9 cut(s) 55, 130, 132, 183, 201, 258, 303, 379, 424
BspANI GGCC 3 cut(s) 85, 261, 423
BspDI ATCGAT 1 cut(s) 352
BspFNI CGCG 2 cut(s) 132, 244
BspLI GGNNCC 5 cut(s) 85, 86, 127, 128, 136
BspPI GGATC 1 cut(s) 237
BsrI ACTGG 1 cut(s) 313
BssECI CCNNGG 3 cut(s) 130, 292, 388
BssHII GCGCGC 1 cut(s) 242
BssMI GATC 6 cut(s) 166, 229, 278, 327, 353, 402
BssNI GRCGYC 3 cut(s) 23, 179, 205
Bst2UI CCWGG 1 cut(s) 119
Bst4CI ACNGT 2 cut(s) 16, 224
BstACI GRCGYC 3 cut(s) 23, 179, 205
BstBAI YACGTR 1 cut(s) 154
BstC8I GCNNGC 1 cut(s) 244
BstDSI CCRYGG 1 cut(s) 130
BstFNI CGCG 2 cut(s) 132, 244
BstHHI GCGC 2 cut(s) 244, 246
BstKTI GATC 6 cut(s) 169, 232, 281, 330, 356, 405
BstMAI GTCTC 2 cut(s) 212, 278
BstMBI GATC 6 cut(s) 166, 229, 278, 327, 353, 402
BstNI CCWGG 1 cut(s) 119
BstPAI GACNNNNGTC 1 cut(s) 14
BstSCI CCNGG 3 cut(s) 117, 292, 387
BstSLI GKGCMC 1 cut(s) 87
BstUI CGCG 2 cut(s) 132, 244
BstV1I GCAGC 2 cut(s) 280, 400
BstV2I GAAGAC 1 cut(s) 14
BstX2I RGATCY 2 cut(s) 166, 229
BstXI CCANNNNNNTGG 1 cut(s) 368
BstYI RGATCY 2 cut(s) 166, 229
Bsu15I ATCGAT 1 cut(s) 352
BsuRI GGCC 3 cut(s) 85, 261, 423
BsuTUI ATCGAT 1 cut(s) 352
BtgI CCRYGG 1 cut(s) 130
BtgZI GCGATG 1 cut(s) 172
BtrI CACGTC 1 cut(s) 61
Cac8I GCNNGC 1 cut(s) 244
CfoI GCGC 2 cut(s) 244, 246
Cfr13I GGNCC 4 cut(s) 83, 84, 126, 134
Cfr42I CCGCGG 1 cut(s) 133
ClaI ATCGAT 1 cut(s) 352
CseI GACGC 3 cut(s) 31, 260, 419
Csp6I GTAC 1 cut(s) 225
CviAII CATG 2 cut(s) 97, 107
CviJI RGCY 6 cut(s) 30, 40, 85, 190, 261, 423
CviKI_1 RGCY 6 cut(s) 30, 40, 85, 190, 261, 423
CviQI GTAC 1 cut(s) 225
DpnI GATC 6 cut(s) 168, 231, 280, 329, 355, 404
DpnII GATC 6 cut(s) 166, 229, 278, 327, 353, 402
EciI GGCGGA 3 cut(s) 44, 292, 394
Ecl136II GAGCTC 1 cut(s) 30
Eco24I GRGCYC 2 cut(s) 32, 87
Eco47I GGWCC 2 cut(s) 126, 134
Eco53kI GAGCTC 1 cut(s) 30
Eco72I CACGTG 1 cut(s) 154
EcoICRI GAGCTC 1 cut(s) 30
EcoO109I RGGNCCY 2 cut(s) 84, 126
EcoRI GAATTC 1 cut(s) 372
EcoRII CCWGG 1 cut(s) 117
EcoT38I GRGCYC 2 cut(s) 32, 87
Esp3I CGTCTC 2 cut(s) 212, 278
FaeI CATG 2 cut(s) 100, 110
FaiI YATR 2 cut(s) 98, 108
FaqI GGGAC 1 cut(s) 112
FatI CATG 2 cut(s) 96, 106
FauI CCCGC 1 cut(s) 137
FbaI TGATCA 1 cut(s) 402
Fnu4HI GCNGC 4 cut(s) 259, 269, 414, 424
FriOI GRGCYC 2 cut(s) 32, 87
Fsp4HI GCNGC 4 cut(s) 259, 269, 414, 424
FspBI CTAG 2 cut(s) 255, 427
GlaI GCGC 2 cut(s) 243, 245
GluI GCNGC 4 cut(s) 259, 269, 414, 424
GsuI CTGGAG 1 cut(s) 248
HaeIII GGCC 3 cut(s) 85, 261, 423
HapII CCGG 3 cut(s) 294, 321, 388
HgaI GACGC 3 cut(s) 31, 260, 419
HhaI GCGC 2 cut(s) 244, 246
Hin1I GRCGYC 3 cut(s) 23, 179, 205
Hin1II CATG 2 cut(s) 100, 110
Hin6I GCGC 2 cut(s) 242, 244
HinP1I GCGC 2 cut(s) 242, 244
HinfI GANTC 3 cut(s) 68, 299, 382
HpaII CCGG 3 cut(s) 294, 321, 388
HphI GGTGA 1 cut(s) 322
Hpy188I TCNGA 2 cut(s) 234, 278
Hpy188III TCNNGA 1 cut(s) 19
Hpy99I CGWCG 3 cut(s) 16, 25, 241
HpyCH4III ACNGT 2 cut(s) 16, 224
HpyCH4IV ACGT 4 cut(s) 60, 153, 179, 205
HpySE526I ACGT 4 cut(s) 60, 153, 179, 205
Hsp92I GRCGYC 3 cut(s) 23, 179, 205
Hsp92II CATG 2 cut(s) 100, 110
HspAI GCGC 2 cut(s) 242, 244
KflI GGGWCCC 1 cut(s) 126
Ksp22I TGATCA 1 cut(s) 402
KspI CCGCGG 1 cut(s) 133
Kzo9I GATC 6 cut(s) 166, 229, 278, 327, 353, 402
Lsp1109I GCAGC 2 cut(s) 280, 400
MaeI CTAG 2 cut(s) 255, 427
MaeII ACGT 4 cut(s) 60, 153, 179, 205
MaeIII GTNAC 2 cut(s) 16, 149
MalI GATC 6 cut(s) 168, 231, 280, 329, 355, 404
MboI GATC 6 cut(s) 166, 229, 278, 327, 353, 402
MboII GAAGA 1 cut(s) 19
MflI RGATCY 2 cut(s) 166, 229
MhlI GDGCHC 2 cut(s) 32, 87
MluCI AATT 3 cut(s) 308, 366, 372
MlyI GAGTC 3 cut(s) 62, 308, 376
MnlI CCTC 7 cut(s) 148, 168, 257, 272, 299, 386, 413
MseI TTAA 1 cut(s) 194
MspA1I CMGCKG 1 cut(s) 132
MspI CCGG 3 cut(s) 294, 321, 388
MspR9I CCNGG 3 cut(s) 119, 294, 389
MvaI CCWGG 1 cut(s) 119
MvnI CGCG 2 cut(s) 132, 244
NciI CCSGG 2 cut(s) 294, 389
NdeII GATC 6 cut(s) 166, 229, 278, 327, 353, 402
NlaIII CATG 2 cut(s) 100, 110
NlaIV GGNNCC 5 cut(s) 85, 86, 127, 128, 136
NmeAIII GCCGAG 1 cut(s) 51
NmuCI GTSAC 2 cut(s) 16, 149
PalAI GGCGCGCC 1 cut(s) 242
PauI GCGCGC 1 cut(s) 242
PcsI WCGNNNNNNNCGW 3 cut(s) 17, 29, 233
Pfl23II CGTACG 1 cut(s) 224
PkrI GCNGC 4 cut(s) 260, 270, 415, 425
PleI GAGTC 3 cut(s) 62, 307, 376
PmaCI CACGTG 1 cut(s) 154
PmlI CACGTG 1 cut(s) 154
PpsI GAGTC 3 cut(s) 62, 307, 376
Ppu21I YACGTR 1 cut(s) 154
PpuMI RGGWCCY 1 cut(s) 126
PshAI GACNNNNGTC 1 cut(s) 14
Psp124BI GAGCTC 1 cut(s) 32
Psp5II RGGWCCY 1 cut(s) 126
Psp6I CCWGG 1 cut(s) 117
PspCI CACGTG 1 cut(s) 154
PspGI CCWGG 1 cut(s) 117
PspLI CGTACG 1 cut(s) 224
PspN4I GGNNCC 5 cut(s) 85, 86, 127, 128, 136
PspOMI GGGCCC 1 cut(s) 83
PspPI GGNCC 4 cut(s) 83, 84, 126, 134
PspPPI RGGWCCY 1 cut(s) 126
PsuI RGATCY 2 cut(s) 166, 229
PteI GCGCGC 1 cut(s) 242
RsaI GTAC 1 cut(s) 226
RsaNI GTAC 1 cut(s) 225
SacI GAGCTC 1 cut(s) 32
SacII CCGCGG 1 cut(s) 133
SaqAI TTAA 1 cut(s) 194
SatI GCNGC 4 cut(s) 259, 269, 414, 424
Sau3AI GATC 6 cut(s) 166, 229, 278, 327, 353, 402
Sau96I GGNCC 4 cut(s) 83, 84, 126, 134
SchI GAGTC 3 cut(s) 62, 308, 376
ScrFI CCNGG 3 cut(s) 119, 294, 389
SduI GDGCHC 2 cut(s) 32, 87
SetI ASST 6 cut(s) 32, 63, 93, 156, 182, 208
Sfr303I CCGCGG 1 cut(s) 133
SgrBI CCGCGG 1 cut(s) 133
SgsI GGCGCGCC 1 cut(s) 242
SinI GGWCC 2 cut(s) 126, 134
Sse9I AATT 3 cut(s) 308, 366, 372
SsiI CCGC 9 cut(s) 55, 130, 132, 183, 201, 258, 303, 379, 424
SspMI CTAG 2 cut(s) 255, 427
SstI GAGCTC 1 cut(s) 32
StyD4I CCNGG 3 cut(s) 117, 292, 387
TaaI ACNGT 2 cut(s) 16, 224
TaiI ACGT 4 cut(s) 63, 156, 182, 208
TaqI TCGA 3 cut(s) 32, 66, 352
TasI AATT 3 cut(s) 308, 366, 372
TauI GCSGC 2 cut(s) 261, 426
Tru1I TTAA 1 cut(s) 194
Tru9I TTAA 1 cut(s) 194
TseFI GTSAC 2 cut(s) 16, 149
TseI GCWGC 2 cut(s) 268, 413
Tsp45I GTSAC 2 cut(s) 16, 149
TspDTI ATGAA 1 cut(s) 85
TspGWI ACGGA 2 cut(s) 202, 242
VpaK11BI GGWCC 2 cut(s) 126, 134
XapI RAATTY 2 cut(s) 308, 372
XspI CTAG 2 cut(s) 255, 427
ZraI GACGTC 2 cut(s) 180, 206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.