FvH4_5g30951

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000118
Physical Location & Seq
Forward (+)
21895338 .. 21895893
556 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g30951.t1

Sequence Viewer

Length: 315 bp
ATGGGATCAGAGGCAGACATCCGCACACCCTTAAAGTGCGGACGTGCCTCTGTTCTCCACCGTACGGCTCTGAAAACACGGCGCCTCCACCCCAGCGACCTCCAGCAGCGTCCCCGATCACTTTTCCTCCCCAGCGAGTCTGCCGAATTCCAGTTTTCCGACGTCGTCTGTTCTCCGCCGTCTCACGCCGGCGACGGCTTCTCTCCTTCCCGGACGACAGCACAGGCTTCCAGGACGGTTTCTCTCCTTTTAGGATTGGCCGACGACAAGTTTTCCTACCGGATTGAAGCTCTGGACGGAAAACACCGTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

105

Amino Acids

11.45

Weight (kDa)

9.23

Isoelectric Point (pI)

51.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000118)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01361 FvH4_1g07161 FvH4_1g07431 FvH4_1g07821 FvH4_1g08223 FvH4_1g10041 FvH4_1g12132 FvH4_1g15053 FvH4_1g18161 FvH4_1g18400 FvH4_1g18931 FvH4_1g19242 FvH4_1g19461 FvH4_1g20550 FvH4_1g21381 FvH4_1g21542 FvH4_1g22102 FvH4_1g23991 FvH4_1g24542 FvH4_1g24951 FvH4_1g24960 FvH4_1g25272 FvH4_1g25552 FvH4_1g25771 FvH4_1g28771 FvH4_1g29201 FvH4_1g29611 FvH4_2g01181 FvH4_2g02491 FvH4_2g04621 FvH4_2g04631 FvH4_2g07460 FvH4_2g08540 FvH4_2g08550 FvH4_2g09292 FvH4_2g10501 FvH4_2g12101 FvH4_2g12220 FvH4_2g12551 FvH4_2g14071 FvH4_2g14241 FvH4_2g15041 FvH4_2g15311 FvH4_2g18971 FvH4_2g19220 FvH4_2g19260 FvH4_2g19611 FvH4_2g19652 FvH4_2g20211 FvH4_2g20231 FvH4_2g21541 FvH4_2g22380 FvH4_2g27712 FvH4_2g28171 FvH4_2g29879 FvH4_2g32391 FvH4_3g02171 FvH4_3g05531 FvH4_3g09750 FvH4_3g10310 FvH4_3g10460 FvH4_3g13172 FvH4_3g15232 FvH4_3g18481 FvH4_3g18621 FvH4_3g20504 FvH4_3g20812 FvH4_3g22320 FvH4_3g22930 FvH4_3g22940 FvH4_3g23752 FvH4_3g24791 FvH4_3g26411 FvH4_3g26432 FvH4_3g27201 FvH4_3g27862 FvH4_3g28871 FvH4_3g28954 FvH4_3g29131 FvH4_3g29832 FvH4_3g29922 FvH4_3g30190 FvH4_3g32231 FvH4_3g32250 FvH4_3g33460 FvH4_3g34670 FvH4_3g36982 FvH4_3g37001 FvH4_3g38252 FvH4_3g38772 FvH4_3g40141 FvH4_3g40181 FvH4_3g42521 FvH4_4g00090 FvH4_4g00290 FvH4_4g00301 FvH4_4g00530 FvH4_4g00823 FvH4_4g02300 FvH4_4g02450 FvH4_4g03360 FvH4_4g04481 FvH4_4g04761 FvH4_4g06301 FvH4_4g06630 FvH4_4g08312 FvH4_4g08552 FvH4_4g10053 FvH4_4g11971 FvH4_4g13211 FvH4_4g13511 FvH4_4g15351 FvH4_4g16360 FvH4_4g16601 FvH4_4g18462 FvH4_4g22911 FvH4_4g23221 FvH4_4g24301 FvH4_4g24721 FvH4_4g27905 FvH4_4g28971 FvH4_4g29540 FvH4_4g30720 FvH4_4g31521 FvH4_4g33371 FvH4_4g34111 FvH4_4g35740 FvH4_5g00131 FvH4_5g02530 FvH4_5g02550 FvH4_5g02560 FvH4_5g02580 FvH4_5g03783 FvH4_5g05681 FvH4_5g05681 FvH4_5g09371 FvH4_5g09381 FvH4_5g14611 FvH4_5g15341 FvH4_5g19801 FvH4_5g20110 FvH4_5g20911 FvH4_5g22230 FvH4_5g25751 FvH4_5g26070 FvH4_5g26471 FvH4_5g27072 FvH4_5g27471 FvH4_5g27471 FvH4_5g27998 FvH4_5g28291 FvH4_5g30951 FvH4_5g31082 FvH4_5g31890 FvH4_5g32251 FvH4_5g34112 FvH4_5g37184 FvH4_5g37993 FvH4_5g38271 FvH4_6g00153 FvH4_6g00640 FvH4_6g05921 FvH4_6g08591 FvH4_6g09511 FvH4_6g10331 FvH4_6g10401 FvH4_6g14161 FvH4_6g14171 FvH4_6g18481 FvH4_6g19721 FvH4_6g19980 FvH4_6g20104 FvH4_6g20112 FvH4_6g21261 FvH4_6g21651 FvH4_6g22051 FvH4_6g23141 FvH4_6g24822 FvH4_6g25082 FvH4_6g25391 FvH4_6g25560 FvH4_6g26350 FvH4_6g27031 FvH4_6g27810 FvH4_6g27971 FvH4_6g28331 FvH4_6g29391 FvH4_6g30781 FvH4_6g32221 FvH4_6g34680 FvH4_6g36181 FvH4_6g36551 FvH4_6g37491 FvH4_6g37663 FvH4_6g39590 FvH4_6g40582 FvH4_6g43843 FvH4_6g50551 FvH4_7g00240 FvH4_7g00731 FvH4_7g01031 FvH4_7g03301 FvH4_7g08180 FvH4_7g08180 FvH4_7g10631 FvH4_7g19710 FvH4_7g23892 FvH4_7g25280 FvH4_7g25551 FvH4_7g30121 FvH4_7g31931 FvH4_7g32672 FvH4_c21g00040 FvH4_c2g00053
prunus_persica Prupe.1G448800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322451 RchiOBHm_Chr5g0015171
rosa_laevigata RLG00000003077 RLG00000018186 RLG00000030343
rosa_multiflora Rmu_co8096726.1_g000001
rosa_roxburghii Rroxscaffold_157G00438380 Rroxscaffold_1G00001730 Rroxscaffold_3G00236310
rosa_rugosa Rorug02G0236500
rosa_samantha Rh4BG247300 Rh6BG286200 Rh6CG287300 Rh7DG257500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 165
AccB1I GGYRCC 1 cut(s) 81
AciI CCGC 3 cut(s) 22, 39, 176
AclWI GGATC 1 cut(s) 13
AcoI YGGCCR 1 cut(s) 258
AcsI RAATTY 1 cut(s) 146
AcyI GRCGYC 2 cut(s) 82, 162
AfaI GTAC 1 cut(s) 64
AfiI CCNNNNNNNGG 1 cut(s) 64
AgsI TTSAA 1 cut(s) 287
AjiI CACGTC 1 cut(s) 44
AjnI CCWGG 1 cut(s) 230
AluBI AGCT 1 cut(s) 290
AluI AGCT 1 cut(s) 290
Alw26I GTCTC 1 cut(s) 186
AlwI GGATC 1 cut(s) 13
AoxI GGCC 1 cut(s) 258
ApeKI GCWGC 1 cut(s) 106
ApoI RAATTY 1 cut(s) 146
AspLEI GCGC 1 cut(s) 84
AsuC2I CCSGG 1 cut(s) 211
BanI GGYRCC 1 cut(s) 81
BbvI GCAGC 1 cut(s) 118
BceAI ACGGC 4 cut(s) 81, 95, 163, 211
BciT130I CCWGG 1 cut(s) 232
BcnI CCSGG 1 cut(s) 211
BcoDI GTCTC 1 cut(s) 186
BfoI RGCGCY 1 cut(s) 85
BisI GCNGC 1 cut(s) 107
BlsI GCNGC 1 cut(s) 108
Bme1390I CCNGG 2 cut(s) 211, 232
BmgBI CACGTC 1 cut(s) 44
BmiI GGNNCC 1 cut(s) 83
BmrFI CCNGG 2 cut(s) 211, 232
BpmI CTGGAG 1 cut(s) 86
BpuMI CCSGG 1 cut(s) 211
BsaHI GRCGYC 2 cut(s) 82, 162
BsaWI WCCGGW 1 cut(s) 279
BsaXI ACNNNNNCTCC 4 cut(s) 69, 99, 111, 141
Bsc4I CCNNNNNNNGG 1 cut(s) 64
Bse118I RCCGGY 1 cut(s) 188
Bse1I ACTGG 1 cut(s) 151
BseBI CCWGG 1 cut(s) 232
BseGI GGATG 1 cut(s) 18
BseLI CCNNNNNNNGG 1 cut(s) 64
BseNI ACTGG 1 cut(s) 151
BseXI GCAGC 1 cut(s) 118
BseYI CCCAGC 2 cut(s) 92, 131
BshFI GGCC 1 cut(s) 260
BshNI GGYRCC 1 cut(s) 81
BsiSI CCGG 3 cut(s) 189, 211, 280
BsiWI CGTACG 1 cut(s) 62
BslFI GGGAC 1 cut(s) 96
BslI CCNNNNNNNGG 1 cut(s) 64
BsmAI GTCTC 1 cut(s) 186
BsmBI CGTCTC 1 cut(s) 186
BsmFI GGGAC 1 cut(s) 96
BsnI GGCC 1 cut(s) 260
Bsp143I GATC 2 cut(s) 5, 116
BspACI CCGC 3 cut(s) 22, 39, 176
BspANI GGCC 1 cut(s) 260
BspLI GGNNCC 1 cut(s) 83
BspPI GGATC 1 cut(s) 13
BspT107I GGYRCC 1 cut(s) 81
BsrFI RCCGGY 1 cut(s) 188
BsrI ACTGG 1 cut(s) 151
BssAI RCCGGY 1 cut(s) 188
BssMI GATC 2 cut(s) 5, 116
BssNI GRCGYC 2 cut(s) 82, 162
Bst2UI CCWGG 1 cut(s) 232
Bst4CI ACNGT 3 cut(s) 62, 238, 308
BstACI GRCGYC 2 cut(s) 82, 162
BstC8I GCNNGC 1 cut(s) 190
BstF5I GGATG 1 cut(s) 18
BstH2I RGCGCY 1 cut(s) 85
BstHHI GCGC 1 cut(s) 84
BstKTI GATC 2 cut(s) 8, 119
BstMAI GTCTC 1 cut(s) 186
BstMBI GATC 2 cut(s) 5, 116
BstNI CCWGG 1 cut(s) 232
BstSCI CCNGG 2 cut(s) 209, 230
BstV1I GCAGC 1 cut(s) 118
BsuRI GGCC 1 cut(s) 260
BtrI CACGTC 1 cut(s) 44
BtsCI GGATG 1 cut(s) 18
Cac8I GCNNGC 1 cut(s) 190
CfoI GCGC 1 cut(s) 84
Cfr10I RCCGGY 1 cut(s) 188
CseI GACGC 1 cut(s) 98
Csp6I GTAC 1 cut(s) 63
CviJI RGCY 5 cut(s) 68, 198, 227, 260, 290
CviKI_1 RGCY 5 cut(s) 68, 198, 227, 260, 290
CviQI GTAC 1 cut(s) 63
DinI GGCGCC 1 cut(s) 83
DpnI GATC 2 cut(s) 7, 118
DpnII GATC 2 cut(s) 5, 116
EaeI YGGCCR 1 cut(s) 258
EciI GGCGGA 1 cut(s) 165
EcoRI GAATTC 1 cut(s) 146
EcoRII CCWGG 1 cut(s) 230
EgeI GGCGCC 1 cut(s) 83
EheI GGCGCC 1 cut(s) 83
Esp3I CGTCTC 1 cut(s) 186
FaqI GGGAC 1 cut(s) 96
Fnu4HI GCNGC 1 cut(s) 107
FokI GGATG 1 cut(s) 5
Fsp4HI GCNGC 1 cut(s) 107
GlaI GCGC 1 cut(s) 83
GluI GCNGC 1 cut(s) 107
GsaI CCCAGC 2 cut(s) 96, 135
GsuI CTGGAG 1 cut(s) 86
HaeII RGCGCY 1 cut(s) 85
HaeIII GGCC 1 cut(s) 260
HapII CCGG 3 cut(s) 189, 211, 280
HgaI GACGC 1 cut(s) 98
HhaI GCGC 1 cut(s) 84
Hin1I GRCGYC 2 cut(s) 82, 162
Hin6I GCGC 1 cut(s) 82
HinP1I GCGC 1 cut(s) 82
HinfI GANTC 1 cut(s) 137
HpaII CCGG 3 cut(s) 189, 211, 280
Hpy188I TCNGA 3 cut(s) 10, 72, 160
Hpy188III TCNNGA 1 cut(s) 293
Hpy99I CGWCG 4 cut(s) 164, 167, 197, 266
HpyAV CCTTC 1 cut(s) 216
HpyCH4III ACNGT 3 cut(s) 62, 238, 308
HpyCH4IV ACGT 2 cut(s) 43, 162
HpySE526I ACGT 2 cut(s) 43, 162
Hsp92I GRCGYC 2 cut(s) 82, 162
HspAI GCGC 1 cut(s) 82
KasI GGCGCC 1 cut(s) 81
KroI GCCGGC 1 cut(s) 188
KroNI GCCGGC 1 cut(s) 190
Kzo9I GATC 2 cut(s) 5, 116
Lsp1109I GCAGC 1 cut(s) 118
MaeII ACGT 2 cut(s) 43, 162
MalI GATC 2 cut(s) 7, 118
MboI GATC 2 cut(s) 5, 116
MluCI AATT 1 cut(s) 146
Mly113I GGCGCC 1 cut(s) 82
MlyI GAGTC 1 cut(s) 146
MmeI TCCRAC 1 cut(s) 183
MnlI CCTC 5 cut(s) 4, 58, 95, 110, 137
MreI CGCCGGCG 1 cut(s) 188
MroNI GCCGGC 1 cut(s) 188
MseI TTAA 1 cut(s) 32
MspI CCGG 3 cut(s) 189, 211, 280
MspR9I CCNGG 2 cut(s) 211, 232
MvaI CCWGG 1 cut(s) 232
NaeI GCCGGC 1 cut(s) 190
NarI GGCGCC 1 cut(s) 82
NciI CCSGG 1 cut(s) 211
NdeII GATC 2 cut(s) 5, 116
NgoMIV GCCGGC 1 cut(s) 188
NlaIV GGNNCC 1 cut(s) 83
PdiI GCCGGC 1 cut(s) 190
Pfl23II CGTACG 1 cut(s) 62
PflFI GACNNNGTC 1 cut(s) 164
PfoI TCCNGGA 2 cut(s) 209, 230
PkrI GCNGC 1 cut(s) 108
PleI GAGTC 1 cut(s) 145
PluTI GGCGCC 1 cut(s) 85
PpsI GAGTC 1 cut(s) 145
Psp6I CCWGG 1 cut(s) 230
PspFI CCCAGC 2 cut(s) 92, 131
PspGI CCWGG 1 cut(s) 230
PspLI CGTACG 1 cut(s) 62
PspN4I GGNNCC 1 cut(s) 83
PsyI GACNNNGTC 1 cut(s) 164
RsaI GTAC 1 cut(s) 64
RsaNI GTAC 1 cut(s) 63
SaqAI TTAA 1 cut(s) 32
SatI GCNGC 1 cut(s) 107
Sau3AI GATC 2 cut(s) 5, 116
SchI GAGTC 1 cut(s) 146
ScrFI CCNGG 2 cut(s) 211, 232
SetI ASST 4 cut(s) 46, 102, 165, 292
SfoI GGCGCC 1 cut(s) 83
SgrAI CRCCGGYG 1 cut(s) 188
Sse9I AATT 1 cut(s) 146
SsiI CCGC 3 cut(s) 22, 39, 176
SspDI GGCGCC 1 cut(s) 81
StyD4I CCNGG 2 cut(s) 209, 230
TaaI ACNGT 3 cut(s) 62, 238, 308
TaiI ACGT 2 cut(s) 46, 165
TasI AATT 1 cut(s) 146
Tru1I TTAA 1 cut(s) 32
Tru9I TTAA 1 cut(s) 32
TseI GCWGC 1 cut(s) 106
TspGWI ACGGA 1 cut(s) 312
Tth111I GACNNNGTC 1 cut(s) 164
XapI RAATTY 1 cut(s) 146
ZraI GACGTC 1 cut(s) 163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.