FvH4_5g02530

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000118
Physical Location & Seq
Forward (+)
1532279 .. 1532851
573 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g02530.t1

Sequence Viewer

Length: 492 bp
ATGGAGTTGAAAGGTGTCTCTTTGGTGGTGATGATGATTCTGCTAATCACTGGAACCGCAATGGCCGTAGATGATTGTGTTGGGAACTGCCTTAAGGATTGCCACTGCCTTAAGGGTTGCCCTAACCCAATATCAAGAGCATGCGTCGAAAATTGTCGCAGTCGGTGCCCGCCGGAGCTGGTGGTAGATGAAACTTCTAAGGGCCATAACCGTCATCACCAATATTGCATTGGTTGCTTACATCACTGTGAAAAATATCGCGATGATAAGAAGAAAGAGAAGAAAATGAGAAAATGTATCCATCACTGTGAAACACACTGCAACATCAAAGCTCCTAGTCCTAGTCCTAGTCTTAATCCTAGTCTGAGTCCTAGTCCTAATGATCTGAGTCCTAGTATGAGTCCTAGTGATGATCTGAGTCCTAATCTTAGTCCTAGTTATCTGAGTCCTAGTTTGAGTCCTAGTGATGATTTGAGTCCTAGTTTCCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

164

Amino Acids

17.9

Weight (kDa)

7.06

Isoelectric Point (pI)

72.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000118)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01361 FvH4_1g07161 FvH4_1g07431 FvH4_1g07821 FvH4_1g08223 FvH4_1g10041 FvH4_1g12132 FvH4_1g15053 FvH4_1g18161 FvH4_1g18400 FvH4_1g18931 FvH4_1g19242 FvH4_1g19461 FvH4_1g20550 FvH4_1g21381 FvH4_1g21542 FvH4_1g22102 FvH4_1g23991 FvH4_1g24542 FvH4_1g24951 FvH4_1g24960 FvH4_1g25272 FvH4_1g25552 FvH4_1g25771 FvH4_1g28771 FvH4_1g29201 FvH4_1g29611 FvH4_2g01181 FvH4_2g02491 FvH4_2g04621 FvH4_2g04631 FvH4_2g07460 FvH4_2g08540 FvH4_2g08550 FvH4_2g09292 FvH4_2g10501 FvH4_2g12101 FvH4_2g12220 FvH4_2g12551 FvH4_2g14071 FvH4_2g14241 FvH4_2g15041 FvH4_2g15311 FvH4_2g18971 FvH4_2g19220 FvH4_2g19260 FvH4_2g19611 FvH4_2g19652 FvH4_2g20211 FvH4_2g20231 FvH4_2g21541 FvH4_2g22380 FvH4_2g27712 FvH4_2g28171 FvH4_2g29879 FvH4_2g32391 FvH4_3g02171 FvH4_3g05531 FvH4_3g09750 FvH4_3g10310 FvH4_3g10460 FvH4_3g13172 FvH4_3g15232 FvH4_3g18481 FvH4_3g18621 FvH4_3g20504 FvH4_3g20812 FvH4_3g22320 FvH4_3g22930 FvH4_3g22940 FvH4_3g23752 FvH4_3g24791 FvH4_3g26411 FvH4_3g26432 FvH4_3g27201 FvH4_3g27862 FvH4_3g28871 FvH4_3g28954 FvH4_3g29131 FvH4_3g29832 FvH4_3g29922 FvH4_3g30190 FvH4_3g32231 FvH4_3g32250 FvH4_3g33460 FvH4_3g34670 FvH4_3g36982 FvH4_3g37001 FvH4_3g38252 FvH4_3g38772 FvH4_3g40141 FvH4_3g40181 FvH4_3g42521 FvH4_4g00090 FvH4_4g00290 FvH4_4g00301 FvH4_4g00530 FvH4_4g00823 FvH4_4g02300 FvH4_4g02450 FvH4_4g03360 FvH4_4g04481 FvH4_4g04761 FvH4_4g06301 FvH4_4g06630 FvH4_4g08312 FvH4_4g08552 FvH4_4g10053 FvH4_4g11971 FvH4_4g13211 FvH4_4g13511 FvH4_4g15351 FvH4_4g16360 FvH4_4g16601 FvH4_4g18462 FvH4_4g22911 FvH4_4g23221 FvH4_4g24301 FvH4_4g24721 FvH4_4g27905 FvH4_4g28971 FvH4_4g29540 FvH4_4g30720 FvH4_4g31521 FvH4_4g33371 FvH4_4g34111 FvH4_4g35740 FvH4_5g00131 FvH4_5g02530 FvH4_5g02550 FvH4_5g02560 FvH4_5g02580 FvH4_5g03783 FvH4_5g05681 FvH4_5g05681 FvH4_5g09371 FvH4_5g09381 FvH4_5g14611 FvH4_5g15341 FvH4_5g19801 FvH4_5g20110 FvH4_5g20911 FvH4_5g22230 FvH4_5g25751 FvH4_5g26070 FvH4_5g26471 FvH4_5g27072 FvH4_5g27471 FvH4_5g27471 FvH4_5g27998 FvH4_5g28291 FvH4_5g30951 FvH4_5g31082 FvH4_5g31890 FvH4_5g32251 FvH4_5g34112 FvH4_5g37184 FvH4_5g37993 FvH4_5g38271 FvH4_6g00153 FvH4_6g00640 FvH4_6g05921 FvH4_6g08591 FvH4_6g09511 FvH4_6g10331 FvH4_6g10401 FvH4_6g14161 FvH4_6g14171 FvH4_6g18481 FvH4_6g19721 FvH4_6g19980 FvH4_6g20104 FvH4_6g20112 FvH4_6g21261 FvH4_6g21651 FvH4_6g22051 FvH4_6g23141 FvH4_6g24822 FvH4_6g25082 FvH4_6g25391 FvH4_6g25560 FvH4_6g26350 FvH4_6g27031 FvH4_6g27810 FvH4_6g27971 FvH4_6g28331 FvH4_6g29391 FvH4_6g30781 FvH4_6g32221 FvH4_6g34680 FvH4_6g36181 FvH4_6g36551 FvH4_6g37491 FvH4_6g37663 FvH4_6g39590 FvH4_6g40582 FvH4_6g43843 FvH4_6g50551 FvH4_7g00240 FvH4_7g00731 FvH4_7g01031 FvH4_7g03301 FvH4_7g08180 FvH4_7g08180 FvH4_7g10631 FvH4_7g19710 FvH4_7g23892 FvH4_7g25280 FvH4_7g25551 FvH4_7g30121 FvH4_7g31931 FvH4_7g32672 FvH4_c21g00040 FvH4_c2g00053
prunus_persica Prupe.1G448800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322451 RchiOBHm_Chr5g0015171
rosa_laevigata RLG00000003077 RLG00000018186 RLG00000030343
rosa_multiflora Rmu_co8096726.1_g000001
rosa_roxburghii Rroxscaffold_157G00438380 Rroxscaffold_1G00001730 Rroxscaffold_3G00236310
rosa_rugosa Rorug02G0236500
rosa_samantha Rh4BG247300 Rh6BG286200 Rh6CG287300 Rh7DG257500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 165
AccII CGCG 1 cut(s) 261
AciI CCGC 2 cut(s) 57, 170
AcoI YGGCCR 1 cut(s) 63
AflII CTTAAG 2 cut(s) 92, 110
AgsI TTSAA 1 cut(s) 10
AluBI AGCT 2 cut(s) 178, 332
AluI AGCT 2 cut(s) 178, 332
Alw26I GTCTC 1 cut(s) 22
AoxI GGCC 2 cut(s) 63, 202
AspS9I GGNCC 1 cut(s) 202
AsuHPI GGTGA 2 cut(s) 40, 209
BaeGI GKGCMC 1 cut(s) 170
BanI GGYRCC 1 cut(s) 165
BccI CCATC 1 cut(s) 309
BceAI ACGGC 1 cut(s) 50
BciVI GTATCC 1 cut(s) 308
BcoDI GTCTC 1 cut(s) 22
BfrI CTTAAG 2 cut(s) 92, 110
BfuI GTATCC 1 cut(s) 308
BmgT120I GGNCC 1 cut(s) 202
BmiI GGNNCC 2 cut(s) 55, 167
Bse1I ACTGG 2 cut(s) 55, 487
Bse3DI GCAATG 1 cut(s) 66
BseMI GCAATG 1 cut(s) 66
BseMII CTCAG 4 cut(s) 356, 377, 407, 434
BseNI ACTGG 2 cut(s) 55, 487
BseSI GKGCMC 1 cut(s) 170
Bsh1236I CGCG 1 cut(s) 261
BshFI GGCC 2 cut(s) 65, 204
BshNI GGYRCC 1 cut(s) 165
BsiSI CCGG 1 cut(s) 173
BsmAI GTCTC 1 cut(s) 22
BsnI GGCC 2 cut(s) 65, 204
Bsp1286I GDGCHC 1 cut(s) 170
Bsp143I GATC 2 cut(s) 382, 412
Bsp68I TCGCGA 1 cut(s) 261
BspACI CCGC 2 cut(s) 57, 170
BspANI GGCC 2 cut(s) 65, 204
BspCNI CTCAG 4 cut(s) 357, 378, 408, 435
BspFNI CGCG 1 cut(s) 261
BspLI GGNNCC 2 cut(s) 55, 167
BspT107I GGYRCC 1 cut(s) 165
BspTI CTTAAG 2 cut(s) 92, 110
BsrDI GCAATG 1 cut(s) 66
BsrI ACTGG 2 cut(s) 55, 487
BssMI GATC 2 cut(s) 382, 412
Bst4CI ACNGT 3 cut(s) 212, 248, 308
BstAFI CTTAAG 2 cut(s) 92, 110
BstAPI GCANNNNNTGC 2 cut(s) 165, 234
BstC8I GCNNGC 2 cut(s) 142, 170
BstDEI CTNAG 6 cut(s) 198, 365, 386, 416, 428, 443
BstFNI CGCG 1 cut(s) 261
BstKTI GATC 2 cut(s) 385, 415
BstMAI GTCTC 1 cut(s) 22
BstMBI GATC 2 cut(s) 382, 412
BstMWI GCNNNNNNNGC 2 cut(s) 165, 234
BstNSI RCATGY 1 cut(s) 144
BstSLI GKGCMC 1 cut(s) 170
BstUI CGCG 1 cut(s) 261
BsuI GTATCC 1 cut(s) 308
BsuRI GGCC 2 cut(s) 65, 204
BtgZI GCGATG 1 cut(s) 276
BtsI GCAGTG 2 cut(s) 103, 316
BtsIMutI CAGTG 5 cut(s) 48, 103, 244, 304, 316
BtuMI TCGCGA 1 cut(s) 261
Cac8I GCNNGC 2 cut(s) 142, 170
Cfr13I GGNCC 1 cut(s) 202
CseI GACGC 1 cut(s) 133
CviAII CATG 1 cut(s) 141
CviJI RGCY 4 cut(s) 65, 178, 204, 332
CviKI_1 RGCY 4 cut(s) 65, 178, 204, 332
DdeI CTNAG 6 cut(s) 198, 365, 386, 416, 428, 443
DpnI GATC 2 cut(s) 384, 414
DpnII GATC 2 cut(s) 382, 412
EaeI YGGCCR 1 cut(s) 63
FaeI CATG 1 cut(s) 144
FaiI YATR 3 cut(s) 142, 207, 398
FatI CATG 1 cut(s) 140
FauI CCCGC 1 cut(s) 177
HaeIII GGCC 2 cut(s) 65, 204
HapII CCGG 1 cut(s) 173
HgaI GACGC 1 cut(s) 133
Hin1II CATG 1 cut(s) 144
HinfI GANTC 8 cut(s) 37, 367, 388, 400, 418, 445, 457, 475
HpaII CCGG 1 cut(s) 173
HphI GGTGA 2 cut(s) 40, 209
Hpy188I TCNGA 4 cut(s) 366, 387, 417, 444
Hpy188III TCNNGA 2 cut(s) 135, 260
Hpy99I CGWCG 1 cut(s) 149
HpyCH4III ACNGT 3 cut(s) 212, 248, 308
HpyCH4V TGCA 2 cut(s) 228, 321
HpyF10VI GCNNNNNNNGC 2 cut(s) 165, 234
HpyF3I CTNAG 6 cut(s) 198, 365, 386, 416, 428, 443
Hsp92II CATG 1 cut(s) 144
Kzo9I GATC 2 cut(s) 382, 412
LmnI GCTCC 2 cut(s) 175, 337
LpnPI CCDG 3 cut(s) 36, 164, 186
MalI GATC 2 cut(s) 384, 414
MboI GATC 2 cut(s) 382, 412
MboII GAAGA 2 cut(s) 283, 292
MhlI GDGCHC 1 cut(s) 170
MluCI AATT 1 cut(s) 151
MlyI GAGTC 7 cut(s) 376, 397, 409, 427, 454, 466, 484
MseI TTAA 3 cut(s) 93, 111, 354
MslI CAYNNNNRTG 2 cut(s) 246, 306
MspCI CTTAAG 2 cut(s) 92, 110
MspI CCGG 1 cut(s) 173
MvnI CGCG 1 cut(s) 261
MwoI GCNNNNNNNGC 2 cut(s) 165, 234
NdeII GATC 2 cut(s) 382, 412
NlaIII CATG 1 cut(s) 144
NlaIV GGNNCC 2 cut(s) 55, 167
NruI TCGCGA 1 cut(s) 261
NspI RCATGY 1 cut(s) 144
PaeI GCATGC 1 cut(s) 144
PfeI GAWTC 1 cut(s) 37
PleI GAGTC 7 cut(s) 375, 396, 408, 426, 453, 465, 483
PpsI GAGTC 7 cut(s) 375, 396, 408, 426, 453, 465, 483
PspN4I GGNNCC 2 cut(s) 55, 167
PspPI GGNCC 1 cut(s) 202
RruI TCGCGA 1 cut(s) 261
RseI CAYNNNNRTG 2 cut(s) 246, 306
SaqAI TTAA 3 cut(s) 93, 111, 354
Sau3AI GATC 2 cut(s) 382, 412
Sau96I GGNCC 1 cut(s) 202
SchI GAGTC 7 cut(s) 376, 397, 409, 427, 454, 466, 484
SduI GDGCHC 1 cut(s) 170
SetI ASST 3 cut(s) 16, 180, 334
SmiMI CAYNNNNRTG 2 cut(s) 246, 306
SmlI CTYRAG 2 cut(s) 92, 110
SmoI CTYRAG 2 cut(s) 92, 110
SphI GCATGC 1 cut(s) 144
Sse9I AATT 1 cut(s) 151
SsiI CCGC 2 cut(s) 57, 170
SspI AATATT 1 cut(s) 224
TaaI ACNGT 3 cut(s) 212, 248, 308
TaqI TCGA 1 cut(s) 147
TasI AATT 1 cut(s) 151
TfiI GAWTC 1 cut(s) 37
Tru1I TTAA 3 cut(s) 93, 111, 354
Tru9I TTAA 3 cut(s) 93, 111, 354
TscAI CASTG 5 cut(s) 55, 110, 251, 311, 323
TspDTI ATGAA 1 cut(s) 204
TspRI CASTG 5 cut(s) 55, 110, 251, 311, 323
Vha464I CTTAAG 2 cut(s) 92, 110
XceI RCATGY 1 cut(s) 144
XcmI CCANNNNNNNNNTGG 1 cut(s) 227
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.