FvH4_5g26070

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000118
Physical Location & Seq
Reverse (-)
17549181 .. 17549543
363 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g26070.t1

Sequence Viewer

Length: 363 bp
ATGTATATATATATATCATACAAAGCCGTTCAGAAGAGAACGTCCGCACAGCCCTTAAAGTGTGGACGTCTCTCCGTTCTCCACCGTCCGGTGCCGACGACTCTTTTTCTTCTTATTGGAGGACAACAAACCTTGATACTAAGCTTCCTCTTGCTGGTGGACTCGCTGACTACAAGTTTCCGGCCGAGCTTGATCGGTCTTAAAGCTTTGAGTGAGGTTGCTGCCCAGAGCTTCAATCCCGATCTCTCTGACCTTCGTCTTCATGATTATGTTGTCCCGGATGTCTCTGATGAACTCCGGCAAGAAGAAAAAAGGCGTCGTCAGCGTCGGACGATGAAGAACAGAGAGACGTCCACACTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

121

Amino Acids

13.75

Weight (kDa)

10.0

Isoelectric Point (pI)

60.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000118)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01361 FvH4_1g07161 FvH4_1g07431 FvH4_1g07821 FvH4_1g08223 FvH4_1g10041 FvH4_1g12132 FvH4_1g15053 FvH4_1g18161 FvH4_1g18400 FvH4_1g18931 FvH4_1g19242 FvH4_1g19461 FvH4_1g20550 FvH4_1g21381 FvH4_1g21542 FvH4_1g22102 FvH4_1g23991 FvH4_1g24542 FvH4_1g24951 FvH4_1g24960 FvH4_1g25272 FvH4_1g25552 FvH4_1g25771 FvH4_1g28771 FvH4_1g29201 FvH4_1g29611 FvH4_2g01181 FvH4_2g02491 FvH4_2g04621 FvH4_2g04631 FvH4_2g07460 FvH4_2g08540 FvH4_2g08550 FvH4_2g09292 FvH4_2g10501 FvH4_2g12101 FvH4_2g12220 FvH4_2g12551 FvH4_2g14071 FvH4_2g14241 FvH4_2g15041 FvH4_2g15311 FvH4_2g18971 FvH4_2g19220 FvH4_2g19260 FvH4_2g19611 FvH4_2g19652 FvH4_2g20211 FvH4_2g20231 FvH4_2g21541 FvH4_2g22380 FvH4_2g27712 FvH4_2g28171 FvH4_2g29879 FvH4_2g32391 FvH4_3g02171 FvH4_3g05531 FvH4_3g09750 FvH4_3g10310 FvH4_3g10460 FvH4_3g13172 FvH4_3g15232 FvH4_3g18481 FvH4_3g18621 FvH4_3g20504 FvH4_3g20812 FvH4_3g22320 FvH4_3g22930 FvH4_3g22940 FvH4_3g23752 FvH4_3g24791 FvH4_3g26411 FvH4_3g26432 FvH4_3g27201 FvH4_3g27862 FvH4_3g28871 FvH4_3g28954 FvH4_3g29131 FvH4_3g29832 FvH4_3g29922 FvH4_3g30190 FvH4_3g32231 FvH4_3g32250 FvH4_3g33460 FvH4_3g34670 FvH4_3g36982 FvH4_3g37001 FvH4_3g38252 FvH4_3g38772 FvH4_3g40141 FvH4_3g40181 FvH4_3g42521 FvH4_4g00090 FvH4_4g00290 FvH4_4g00301 FvH4_4g00530 FvH4_4g00823 FvH4_4g02300 FvH4_4g02450 FvH4_4g03360 FvH4_4g04481 FvH4_4g04761 FvH4_4g06301 FvH4_4g06630 FvH4_4g08312 FvH4_4g08552 FvH4_4g10053 FvH4_4g11971 FvH4_4g13211 FvH4_4g13511 FvH4_4g15351 FvH4_4g16360 FvH4_4g16601 FvH4_4g18462 FvH4_4g22911 FvH4_4g23221 FvH4_4g24301 FvH4_4g24721 FvH4_4g27905 FvH4_4g28971 FvH4_4g29540 FvH4_4g30720 FvH4_4g31521 FvH4_4g33371 FvH4_4g34111 FvH4_4g35740 FvH4_5g00131 FvH4_5g02530 FvH4_5g02550 FvH4_5g02560 FvH4_5g02580 FvH4_5g03783 FvH4_5g05681 FvH4_5g05681 FvH4_5g09371 FvH4_5g09381 FvH4_5g14611 FvH4_5g15341 FvH4_5g19801 FvH4_5g20110 FvH4_5g20911 FvH4_5g22230 FvH4_5g25751 FvH4_5g26070 FvH4_5g26471 FvH4_5g27072 FvH4_5g27471 FvH4_5g27471 FvH4_5g27998 FvH4_5g28291 FvH4_5g30951 FvH4_5g31082 FvH4_5g31890 FvH4_5g32251 FvH4_5g34112 FvH4_5g37184 FvH4_5g37993 FvH4_5g38271 FvH4_6g00153 FvH4_6g00640 FvH4_6g05921 FvH4_6g08591 FvH4_6g09511 FvH4_6g10331 FvH4_6g10401 FvH4_6g14161 FvH4_6g14171 FvH4_6g18481 FvH4_6g19721 FvH4_6g19980 FvH4_6g20104 FvH4_6g20112 FvH4_6g21261 FvH4_6g21651 FvH4_6g22051 FvH4_6g23141 FvH4_6g24822 FvH4_6g25082 FvH4_6g25391 FvH4_6g25560 FvH4_6g26350 FvH4_6g27031 FvH4_6g27810 FvH4_6g27971 FvH4_6g28331 FvH4_6g29391 FvH4_6g30781 FvH4_6g32221 FvH4_6g34680 FvH4_6g36181 FvH4_6g36551 FvH4_6g37491 FvH4_6g37663 FvH4_6g39590 FvH4_6g40582 FvH4_6g43843 FvH4_6g50551 FvH4_7g00240 FvH4_7g00731 FvH4_7g01031 FvH4_7g03301 FvH4_7g08180 FvH4_7g08180 FvH4_7g10631 FvH4_7g19710 FvH4_7g23892 FvH4_7g25280 FvH4_7g25551 FvH4_7g30121 FvH4_7g31931 FvH4_7g32672 FvH4_c21g00040 FvH4_c2g00053
prunus_persica Prupe.1G448800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322451 RchiOBHm_Chr5g0015171
rosa_laevigata RLG00000003077 RLG00000018186 RLG00000030343
rosa_multiflora Rmu_co8096726.1_g000001
rosa_roxburghii Rroxscaffold_157G00438380 Rroxscaffold_1G00001730 Rroxscaffold_3G00236310
rosa_rugosa Rorug02G0236500
rosa_samantha Rh4BG247300 Rh6BG286200 Rh6CG287300 Rh7DG257500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 70, 353
AccB1I GGYRCC 1 cut(s) 91
AciI CCGC 1 cut(s) 45
AcoI YGGCCR 1 cut(s) 182
AcyI GRCGYC 3 cut(s) 67, 316, 350
AfiI CCNNNNNNNGG 2 cut(s) 88, 154
AgsI TTSAA 1 cut(s) 235
AluBI AGCT 4 cut(s) 144, 189, 206, 231
AluI AGCT 4 cut(s) 144, 189, 206, 231
Alw26I GTCTC 3 cut(s) 74, 289, 341
AoxI GGCC 1 cut(s) 182
ApeKI GCWGC 1 cut(s) 221
AsuC2I CCSGG 1 cut(s) 278
BanI GGYRCC 1 cut(s) 91
BbsI GAAGAC 1 cut(s) 251
BbvI GCAGC 1 cut(s) 208
BceAI ACGGC 1 cut(s) 11
BcnI CCSGG 1 cut(s) 278
BcoDI GTCTC 3 cut(s) 74, 289, 341
BisI GCNGC 1 cut(s) 222
BlsI GCNGC 1 cut(s) 223
Bme1390I CCNGG 1 cut(s) 278
BmiI GGNNCC 1 cut(s) 93
BmrFI CCNGG 1 cut(s) 278
BoxI GACNNNNGTC 1 cut(s) 255
BpiI GAAGAC 1 cut(s) 251
BpuMI CCSGG 1 cut(s) 278
BsaHI GRCGYC 3 cut(s) 67, 316, 350
BsaWI WCCGGW 1 cut(s) 88
Bsc4I CCNNNNNNNGG 2 cut(s) 88, 154
BseGI GGATG 1 cut(s) 286
BseLI CCNNNNNNNGG 2 cut(s) 88, 154
BseX3I CGGCCG 1 cut(s) 182
BseXI GCAGC 1 cut(s) 208
Bsh1285I CGRYCG 1 cut(s) 185
BshFI GGCC 1 cut(s) 184
BshNI GGYRCC 1 cut(s) 91
BsiEI CGRYCG 1 cut(s) 185
BsiSI CCGG 4 cut(s) 89, 181, 278, 298
BslFI GGGAC 1 cut(s) 260
BslI CCNNNNNNNGG 2 cut(s) 88, 154
BsmAI GTCTC 3 cut(s) 74, 289, 341
BsmBI CGTCTC 2 cut(s) 74, 341
BsmFI GGGAC 1 cut(s) 260
BsnI GGCC 1 cut(s) 184
Bsp143I GATC 2 cut(s) 192, 241
BspACI CCGC 1 cut(s) 45
BspANI GGCC 1 cut(s) 184
BspHI TCATGA 1 cut(s) 262
BspLI GGNNCC 1 cut(s) 93
BspT107I GGYRCC 1 cut(s) 91
BssMI GATC 2 cut(s) 192, 241
BssNI GRCGYC 3 cut(s) 67, 316, 350
Bst4CI ACNGT 1 cut(s) 86
Bst6I CTCTTC 1 cut(s) 29
BstACI GRCGYC 3 cut(s) 67, 316, 350
BstDEI CTNAG 1 cut(s) 140
BstF5I GGATG 1 cut(s) 286
BstKTI GATC 2 cut(s) 195, 244
BstMAI GTCTC 3 cut(s) 74, 289, 341
BstMBI GATC 2 cut(s) 192, 241
BstMCI CGRYCG 1 cut(s) 185
BstMWI GCNNNNNNNGC 1 cut(s) 322
BstPAI GACNNNNGTC 1 cut(s) 255
BstSCI CCNGG 1 cut(s) 276
BstV1I GCAGC 1 cut(s) 208
BstV2I GAAGAC 1 cut(s) 251
BstZI CGGCCG 1 cut(s) 182
BsuRI GGCC 1 cut(s) 184
BtsCI GGATG 1 cut(s) 286
CciI TCATGA 1 cut(s) 262
CseI GACGC 2 cut(s) 305, 314
CviAII CATG 1 cut(s) 263
CviJI RGCY 7 cut(s) 26, 52, 144, 184, 189, 206, 231
CviKI_1 RGCY 7 cut(s) 26, 52, 144, 184, 189, 206, 231
DdeI CTNAG 1 cut(s) 140
DpnI GATC 2 cut(s) 194, 243
DpnII GATC 2 cut(s) 192, 241
EaeI YGGCCR 1 cut(s) 182
EagI CGGCCG 1 cut(s) 182
Eam1104I CTCTTC 1 cut(s) 29
EarI CTCTTC 1 cut(s) 29
EclXI CGGCCG 1 cut(s) 182
Eco52I CGGCCG 1 cut(s) 182
Esp3I CGTCTC 2 cut(s) 74, 341
FaeI CATG 1 cut(s) 266
FaiI YATR 8 cut(s) 6, 8, 10, 12, 14, 19, 264, 270
FaqI GGGAC 1 cut(s) 260
FatI CATG 1 cut(s) 262
Fnu4HI GCNGC 1 cut(s) 222
FokI GGATG 1 cut(s) 293
Fsp4HI GCNGC 1 cut(s) 222
GluI GCNGC 1 cut(s) 222
HaeIII GGCC 1 cut(s) 184
HapII CCGG 4 cut(s) 89, 181, 278, 298
HgaI GACGC 2 cut(s) 305, 314
Hin1I GRCGYC 3 cut(s) 67, 316, 350
Hin1II CATG 1 cut(s) 266
HindIII AAGCTT 2 cut(s) 142, 204
HinfI GANTC 2 cut(s) 100, 161
HpaII CCGG 4 cut(s) 89, 181, 278, 298
Hpy166II GTNNAC 3 cut(s) 65, 160, 354
Hpy188I TCNGA 4 cut(s) 33, 250, 289, 330
Hpy188III TCNNGA 2 cut(s) 239, 263
Hpy8I GTNNAC 3 cut(s) 65, 160, 354
Hpy99I CGWCG 3 cut(s) 100, 321, 330
HpyAV CCTTC 1 cut(s) 263
HpyCH4III ACNGT 1 cut(s) 86
HpyCH4IV ACGT 3 cut(s) 41, 67, 350
HpyF10VI GCNNNNNNNGC 1 cut(s) 322
HpyF3I CTNAG 1 cut(s) 140
HpySE526I ACGT 3 cut(s) 41, 67, 350
Hsp92I GRCGYC 3 cut(s) 67, 316, 350
Hsp92II CATG 1 cut(s) 266
Kzo9I GATC 2 cut(s) 192, 241
LpnPI CCDG 6 cut(s) 102, 140, 194, 239, 291, 311
Lsp1109I GCAGC 1 cut(s) 208
MaeII ACGT 3 cut(s) 41, 67, 350
MalI GATC 2 cut(s) 194, 243
MboI GATC 2 cut(s) 192, 241
MboII GAAGA 5 cut(s) 46, 101, 251, 317, 349
MlyI GAGTC 2 cut(s) 94, 155
MmeI TCCRAC 1 cut(s) 308
MnlI CCTC 3 cut(s) 113, 158, 208
MseI TTAA 3 cut(s) 56, 201, 361
MslI CAYNNNNRTG 1 cut(s) 267
MspI CCGG 4 cut(s) 89, 181, 278, 298
MspR9I CCNGG 1 cut(s) 278
MwoI GCNNNNNNNGC 1 cut(s) 322
NciI CCSGG 1 cut(s) 278
NdeII GATC 2 cut(s) 192, 241
NlaIII CATG 1 cut(s) 266
NlaIV GGNNCC 1 cut(s) 93
NmeAIII GCCGAG 1 cut(s) 210
PagI TCATGA 1 cut(s) 262
PfoI TCCNGGA 1 cut(s) 276
PkrI GCNGC 1 cut(s) 223
PleI GAGTC 2 cut(s) 94, 155
PpsI GAGTC 2 cut(s) 94, 155
PshAI GACNNNNGTC 1 cut(s) 255
PspN4I GGNNCC 1 cut(s) 93
RseI CAYNNNNRTG 1 cut(s) 267
SaqAI TTAA 3 cut(s) 56, 201, 361
SatI GCNGC 1 cut(s) 222
Sau3AI GATC 2 cut(s) 192, 241
SchI GAGTC 2 cut(s) 94, 155
ScrFI CCNGG 1 cut(s) 278
SmiMI CAYNNNNRTG 1 cut(s) 267
SsiI CCGC 1 cut(s) 45
StyD4I CCNGG 1 cut(s) 276
TaaI ACNGT 1 cut(s) 86
TaiI ACGT 3 cut(s) 44, 70, 353
TaqII GACCGA 1 cut(s) 185
Tru1I TTAA 3 cut(s) 56, 201, 361
Tru9I TTAA 3 cut(s) 56, 201, 361
TseI GCWGC 1 cut(s) 221
TspDTI ATGAA 3 cut(s) 251, 306, 350
TspGWI ACGGA 1 cut(s) 64
ZraI GACGTC 2 cut(s) 68, 351
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.