FvH4_4g00823

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000118
Physical Location & Seq
Forward (+)
742027 .. 742934
908 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g00823.t1

Sequence Viewer

Length: 798 bp
ATGCCCACCCGAATTCCATTTGCTTCTTGTTCTCCGCTTTCTGTCCATCCATCTCTTCTACTCTTCTTGTTCATGCAGACATTTTCTGTTCATATATACCTTGAGAAGCCAACGCAAGCCTGGGAAAGTCCAGAAAAGAAGGTGAAGGTGAAAGCCATCTGGAGATGGAGTTCAGGGTTTTCTATAGGGCTAACTTCCTCCGACACGATATTTGCTAACAAAACCAATCAAACAGTCACCGGTCCGGTTGCAATATGCCTCGAGATTCCTAGAATTGAGTACACGAGTGGGAGCCGTTCCAAAGAGGACGTCCGCACAGTCCTTAAAGTGTGGACGTCCCTCCGTTCTCCACTGGATGGCTCCGACGATGGCGCGTCTCCACCTGAGCGGACACCAGCGGCGTCCCCGATCACTTTCTCTCCCCGGCGAGTCCGTCGAATTCCAGTTTTCCGGCGAGATTTTCCCGATGAGATTGATTTGAAGGTCTGGGCAGTAACCTCCACCCAAAACTTCAGACAAGATCGATCTCGCCGGAAAACTGGAATTCTGCTGACTCGCCGAGGAGAGAAAGTGATCGGGGACGCCGCTGGTGTCCGCTCGGGTGGAGACCCGCCGTCGTCCGAGCTGTCCAATGGAGAACAGAGGGACGTCCGCATTTTAAGGACGTGTGGACGTCCGCACTTTAAGGACGTGTGGACGTCCGCCTTTGATCCGGACTGTGTGTGTGTGTGTATATATATAATTCTGCTTCTTAATCCTTCCAGCCCCAAACAAGAGTCAAGTGTTAGCATAGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

266

Amino Acids

29.58

Weight (kDa)

9.55

Isoelectric Point (pI)

62.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000118)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01361 FvH4_1g07161 FvH4_1g07431 FvH4_1g07821 FvH4_1g08223 FvH4_1g10041 FvH4_1g12132 FvH4_1g15053 FvH4_1g18161 FvH4_1g18400 FvH4_1g18931 FvH4_1g19242 FvH4_1g19461 FvH4_1g20550 FvH4_1g21381 FvH4_1g21542 FvH4_1g22102 FvH4_1g23991 FvH4_1g24542 FvH4_1g24951 FvH4_1g24960 FvH4_1g25272 FvH4_1g25552 FvH4_1g25771 FvH4_1g28771 FvH4_1g29201 FvH4_1g29611 FvH4_2g01181 FvH4_2g02491 FvH4_2g04621 FvH4_2g04631 FvH4_2g07460 FvH4_2g08540 FvH4_2g08550 FvH4_2g09292 FvH4_2g10501 FvH4_2g12101 FvH4_2g12220 FvH4_2g12551 FvH4_2g14071 FvH4_2g14241 FvH4_2g15041 FvH4_2g15311 FvH4_2g18971 FvH4_2g19220 FvH4_2g19260 FvH4_2g19611 FvH4_2g19652 FvH4_2g20211 FvH4_2g20231 FvH4_2g21541 FvH4_2g22380 FvH4_2g27712 FvH4_2g28171 FvH4_2g29879 FvH4_2g32391 FvH4_3g02171 FvH4_3g05531 FvH4_3g09750 FvH4_3g10310 FvH4_3g10460 FvH4_3g13172 FvH4_3g15232 FvH4_3g18481 FvH4_3g18621 FvH4_3g20504 FvH4_3g20812 FvH4_3g22320 FvH4_3g22930 FvH4_3g22940 FvH4_3g23752 FvH4_3g24791 FvH4_3g26411 FvH4_3g26432 FvH4_3g27201 FvH4_3g27862 FvH4_3g28871 FvH4_3g28954 FvH4_3g29131 FvH4_3g29832 FvH4_3g29922 FvH4_3g30190 FvH4_3g32231 FvH4_3g32250 FvH4_3g33460 FvH4_3g34670 FvH4_3g36982 FvH4_3g37001 FvH4_3g38252 FvH4_3g38772 FvH4_3g40141 FvH4_3g40181 FvH4_3g42521 FvH4_4g00090 FvH4_4g00290 FvH4_4g00301 FvH4_4g00530 FvH4_4g00823 FvH4_4g02300 FvH4_4g02450 FvH4_4g03360 FvH4_4g04481 FvH4_4g04761 FvH4_4g06301 FvH4_4g06630 FvH4_4g08312 FvH4_4g08552 FvH4_4g10053 FvH4_4g11971 FvH4_4g13211 FvH4_4g13511 FvH4_4g15351 FvH4_4g16360 FvH4_4g16601 FvH4_4g18462 FvH4_4g22911 FvH4_4g23221 FvH4_4g24301 FvH4_4g24721 FvH4_4g27905 FvH4_4g28971 FvH4_4g29540 FvH4_4g30720 FvH4_4g31521 FvH4_4g33371 FvH4_4g34111 FvH4_4g35740 FvH4_5g00131 FvH4_5g02530 FvH4_5g02550 FvH4_5g02560 FvH4_5g02580 FvH4_5g03783 FvH4_5g05681 FvH4_5g05681 FvH4_5g09371 FvH4_5g09381 FvH4_5g14611 FvH4_5g15341 FvH4_5g19801 FvH4_5g20110 FvH4_5g20911 FvH4_5g22230 FvH4_5g25751 FvH4_5g26070 FvH4_5g26471 FvH4_5g27072 FvH4_5g27471 FvH4_5g27471 FvH4_5g27998 FvH4_5g28291 FvH4_5g30951 FvH4_5g31082 FvH4_5g31890 FvH4_5g32251 FvH4_5g34112 FvH4_5g37184 FvH4_5g37993 FvH4_5g38271 FvH4_6g00153 FvH4_6g00640 FvH4_6g05921 FvH4_6g08591 FvH4_6g09511 FvH4_6g10331 FvH4_6g10401 FvH4_6g14161 FvH4_6g14171 FvH4_6g18481 FvH4_6g19721 FvH4_6g19980 FvH4_6g20104 FvH4_6g20112 FvH4_6g21261 FvH4_6g21651 FvH4_6g22051 FvH4_6g23141 FvH4_6g24822 FvH4_6g25082 FvH4_6g25391 FvH4_6g25560 FvH4_6g26350 FvH4_6g27031 FvH4_6g27810 FvH4_6g27971 FvH4_6g28331 FvH4_6g29391 FvH4_6g30781 FvH4_6g32221 FvH4_6g34680 FvH4_6g36181 FvH4_6g36551 FvH4_6g37491 FvH4_6g37663 FvH4_6g39590 FvH4_6g40582 FvH4_6g43843 FvH4_6g50551 FvH4_7g00240 FvH4_7g00731 FvH4_7g01031 FvH4_7g03301 FvH4_7g08180 FvH4_7g08180 FvH4_7g10631 FvH4_7g19710 FvH4_7g23892 FvH4_7g25280 FvH4_7g25551 FvH4_7g30121 FvH4_7g31931 FvH4_7g32672 FvH4_c21g00040 FvH4_c2g00053
prunus_persica Prupe.1G448800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322451 RchiOBHm_Chr5g0015171
rosa_laevigata RLG00000003077 RLG00000018186 RLG00000030343
rosa_multiflora Rmu_co8096726.1_g000001
rosa_roxburghii Rroxscaffold_157G00438380 Rroxscaffold_1G00001730 Rroxscaffold_3G00236310
rosa_rugosa Rorug02G0236500
rosa_samantha Rh4BG247300 Rh6BG286200 Rh6CG287300 Rh7DG257500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 5 cut(s) 312, 338, 651, 676, 701
AccB7I CCANNNNNTGG 1 cut(s) 356
AccBSI CCGCTC 2 cut(s) 388, 597
AccII CGCG 1 cut(s) 374
AccIII TCCGGA 1 cut(s) 712
AclWI GGATC 1 cut(s) 704
AcsI RAATTY 3 cut(s) 12, 438, 543
AcuI CTGAAG 1 cut(s) 496
AcyI GRCGYC 7 cut(s) 309, 335, 401, 582, 648, 673, 698
AfaI GTAC 1 cut(s) 281
AfiI CCNNNNNNNGG 1 cut(s) 356
AflIII ACRYGT 2 cut(s) 665, 690
AgeI ACCGGT 1 cut(s) 239
AgsI TTSAA 1 cut(s) 481
AhdI GACNNNNNGTC 1 cut(s) 613
AjiI CACGTC 2 cut(s) 666, 691
AjnI CCWGG 1 cut(s) 119
AloI GAACNNNNNNTCC 2 cut(s) 154, 186
AluBI AGCT 1 cut(s) 625
AluI AGCT 1 cut(s) 625
Alw26I GTCTC 2 cut(s) 381, 600
AlwI GGATC 1 cut(s) 704
Ama87I CYCGRG 2 cut(s) 260, 598
Aor13HI TCCGGA 1 cut(s) 712
ApoI RAATTY 3 cut(s) 12, 438, 543
ArsI GACNNNNNNTTYG 4 cut(s) 194, 226, 294, 326
AsiGI ACCGGT 1 cut(s) 239
AspLEI GCGC 1 cut(s) 374
AspS9I GGNCC 1 cut(s) 242
AsuC2I CCSGG 1 cut(s) 424
AsuHPI GGTGA 3 cut(s) 154, 160, 229
AvaI CYCGRG 2 cut(s) 260, 598
AvaII GGWCC 1 cut(s) 242
BauI CACGAG 1 cut(s) 283
BccI CCATC 6 cut(s) 54, 58, 159, 164, 350, 362
BceAI ACGGC 2 cut(s) 279, 598
BciT130I CCWGG 1 cut(s) 121
BcnI CCSGG 1 cut(s) 424
BcoDI GTCTC 2 cut(s) 381, 600
BfaI CTAG 1 cut(s) 270
BfmI CTRYAG 1 cut(s) 183
BisI GCNGC 2 cut(s) 399, 585
BlsI GCNGC 2 cut(s) 400, 586
Bme1390I CCNGG 2 cut(s) 121, 424
Bme18I GGWCC 1 cut(s) 242
BmeRI GACNNNNNGTC 1 cut(s) 613
BmeT110I CYCGRG 2 cut(s) 260, 598
BmgBI CACGTC 2 cut(s) 666, 691
BmgT120I GGNCC 1 cut(s) 242
BmiI GGNNCC 2 cut(s) 293, 361
BmrFI CCNGG 2 cut(s) 121, 424
BpmI CTGGAG 1 cut(s) 181
Bpu10I CCTNAGC 1 cut(s) 384
BpuEI CTTGAG 1 cut(s) 122
BpuMI CCSGG 1 cut(s) 424
Bsa29I ATCGAT 1 cut(s) 523
BsaHI GRCGYC 7 cut(s) 309, 335, 401, 582, 648, 673, 698
BsaI GGTCTC 1 cut(s) 600
BsaJI CCNNGG 3 cut(s) 120, 422, 559
BsaWI WCCGGW 3 cut(s) 239, 244, 712
BsaXI ACNNNNNCTCC 6 cut(s) 154, 184, 403, 433, 555, 585
Bsc4I CCNNNNNNNGG 1 cut(s) 356
Bse118I RCCGGY 1 cut(s) 239
Bse1I ACTGG 3 cut(s) 357, 443, 544
BseAI TCCGGA 1 cut(s) 712
BseBI CCWGG 1 cut(s) 121
BseCI ATCGAT 1 cut(s) 523
BseDI CCNNGG 3 cut(s) 120, 422, 559
BseGI GGATG 2 cut(s) 46, 361
BseLI CCNNNNNNNGG 1 cut(s) 356
BseMII CTCAG 1 cut(s) 375
BseNI ACTGG 3 cut(s) 357, 443, 544
BseRI GAGGAG 1 cut(s) 576
Bsh1236I CGCG 1 cut(s) 374
BshTI ACCGGT 1 cut(s) 239
BshVI ATCGAT 1 cut(s) 523
BsiHKCI CYCGRG 2 cut(s) 260, 598
BsiSI CCGG 6 cut(s) 240, 245, 424, 451, 532, 713
BslFI GGGAC 4 cut(s) 322, 388, 593, 659
BslI CCNNNNNNNGG 1 cut(s) 356
BsmAI GTCTC 2 cut(s) 381, 600
BsmBI CGTCTC 1 cut(s) 381
BsmFI GGGAC 4 cut(s) 322, 388, 593, 659
Bso31I GGTCTC 1 cut(s) 600
BsoBI CYCGRG 2 cut(s) 260, 598
Bsp13I TCCGGA 1 cut(s) 712
Bsp143I GATC 5 cut(s) 408, 520, 524, 573, 709
BspCNI CTCAG 1 cut(s) 376
BspDI ATCGAT 1 cut(s) 523
BspEI TCCGGA 1 cut(s) 712
BspFNI CGCG 1 cut(s) 374
BspLI GGNNCC 2 cut(s) 293, 361
BspPI GGATC 1 cut(s) 704
BspTNI GGTCTC 1 cut(s) 600
BsrBI CCGCTC 2 cut(s) 388, 597
BsrFI RCCGGY 1 cut(s) 239
BsrI ACTGG 3 cut(s) 357, 443, 544
BssAI RCCGGY 1 cut(s) 239
BssECI CCNNGG 3 cut(s) 120, 422, 559
BssMI GATC 5 cut(s) 408, 520, 524, 573, 709
BssNI GRCGYC 7 cut(s) 309, 335, 401, 582, 648, 673, 698
BssSI CACGAG 1 cut(s) 283
Bst2BI CACGAG 1 cut(s) 283
Bst2UI CCWGG 1 cut(s) 121
Bst4CI ACNGT 3 cut(s) 235, 319, 719
Bst6I CTCTTC 2 cut(s) 60, 68
BstACI GRCGYC 7 cut(s) 309, 335, 401, 582, 648, 673, 698
BstC8I GCNNGC 1 cut(s) 117
BstDEI CTNAG 1 cut(s) 384
BstF5I GGATG 2 cut(s) 46, 361
BstFNI CGCG 1 cut(s) 374
BstHHI GCGC 1 cut(s) 374
BstKTI GATC 5 cut(s) 411, 523, 527, 576, 712
BstMAI GTCTC 2 cut(s) 381, 600
BstMBI GATC 5 cut(s) 408, 520, 524, 573, 709
BstNI CCWGG 1 cut(s) 121
BstSCI CCNGG 2 cut(s) 119, 422
BstSFI CTRYAG 1 cut(s) 183
BstUI CGCG 1 cut(s) 374
Bsu15I ATCGAT 1 cut(s) 523
BsuTUI ATCGAT 1 cut(s) 523
BtrI CACGTC 2 cut(s) 666, 691
BtsCI GGATG 2 cut(s) 46, 361
BtsIMutI CAGTG 1 cut(s) 350
Cac8I GCNNGC 1 cut(s) 117
CfoI GCGC 1 cut(s) 374
Cfr10I RCCGGY 1 cut(s) 239
Cfr13I GGNCC 1 cut(s) 242
ClaI ATCGAT 1 cut(s) 523
CpoI CGGWCCG 1 cut(s) 242
CseI GACGC 3 cut(s) 363, 390, 590
Csp6I GTAC 1 cut(s) 280
CspAI ACCGGT 1 cut(s) 239
CspI CGGWCCG 1 cut(s) 242
CviAII CATG 1 cut(s) 73
CviJI RGCY 8 cut(s) 109, 119, 155, 190, 294, 360, 625, 765
CviKI_1 RGCY 8 cut(s) 109, 119, 155, 190, 294, 360, 625, 765
CviQI GTAC 1 cut(s) 280
DdeI CTNAG 1 cut(s) 384
DpnI GATC 5 cut(s) 410, 522, 526, 575, 711
DpnII GATC 5 cut(s) 408, 520, 524, 573, 709
DriI GACNNNNNGTC 1 cut(s) 613
Eam1104I CTCTTC 2 cut(s) 60, 68
Eam1105I GACNNNNNGTC 1 cut(s) 613
EarI CTCTTC 2 cut(s) 60, 68
EciI GGCGGA 1 cut(s) 691
Eco31I GGTCTC 1 cut(s) 600
Eco47I GGWCC 1 cut(s) 242
Eco57I CTGAAG 1 cut(s) 496
Eco88I CYCGRG 2 cut(s) 260, 598
EcoRI GAATTC 3 cut(s) 12, 438, 543
EcoRII CCWGG 1 cut(s) 119
Esp3I CGTCTC 1 cut(s) 381
FaeI CATG 1 cut(s) 76
FaqI GGGAC 4 cut(s) 322, 388, 593, 659
FatI CATG 1 cut(s) 72
FauI CCCGC 1 cut(s) 618
Fnu4HI GCNGC 2 cut(s) 399, 585
FokI GGATG 2 cut(s) 33, 368
Fsp4HI GCNGC 2 cut(s) 399, 585
FspBI CTAG 1 cut(s) 270
GlaI GCGC 1 cut(s) 373
GluI GCNGC 2 cut(s) 399, 585
GsuI CTGGAG 1 cut(s) 181
HapII CCGG 6 cut(s) 240, 245, 424, 451, 532, 713
HgaI GACGC 3 cut(s) 363, 390, 590
HhaI GCGC 1 cut(s) 374
Hin1I GRCGYC 7 cut(s) 309, 335, 401, 582, 648, 673, 698
Hin1II CATG 1 cut(s) 76
Hin6I GCGC 1 cut(s) 372
HinP1I GCGC 1 cut(s) 372
HinfI GANTC 4 cut(s) 265, 429, 553, 776
HpaII CCGG 6 cut(s) 240, 245, 424, 451, 532, 713
HphI GGTGA 3 cut(s) 154, 160, 229
Hpy166II GTNNAC 4 cut(s) 282, 333, 671, 696
Hpy188I TCNGA 4 cut(s) 202, 364, 515, 622
Hpy188III TCNNGA 5 cut(s) 131, 160, 262, 464, 713
Hpy8I GTNNAC 4 cut(s) 282, 333, 671, 696
Hpy99I CGWCG 3 cut(s) 368, 438, 619
HpyAV CCTTC 4 cut(s) 133, 139, 475, 768
HpyCH4III ACNGT 3 cut(s) 235, 319, 719
HpyCH4IV ACGT 7 cut(s) 309, 335, 648, 665, 673, 690, 698
HpyCH4V TGCA 2 cut(s) 76, 251
HpyF3I CTNAG 1 cut(s) 384
HpySE526I ACGT 7 cut(s) 309, 335, 648, 665, 673, 690, 698
Hsp92I GRCGYC 7 cut(s) 309, 335, 401, 582, 648, 673, 698
Hsp92II CATG 1 cut(s) 76
HspAI GCGC 1 cut(s) 372
Kpn2I TCCGGA 1 cut(s) 712
Kzo9I GATC 5 cut(s) 408, 520, 524, 573, 709
LmnI GCTCC 2 cut(s) 291, 365
MaeI CTAG 1 cut(s) 270
MaeII ACGT 7 cut(s) 309, 335, 648, 665, 673, 690, 698
MaeIII GTNAC 2 cut(s) 235, 493
MalI GATC 5 cut(s) 410, 522, 526, 575, 711
MbiI CCGCTC 2 cut(s) 388, 597
MboI GATC 5 cut(s) 408, 520, 524, 573, 709
MboII GAAGA 2 cut(s) 47, 55
MluCI AATT 5 cut(s) 12, 273, 438, 543, 741
MlyI GAGTC 3 cut(s) 438, 547, 785
MmeI TCCRAC 2 cut(s) 225, 387
MnlI CCTC 7 cut(s) 208, 269, 298, 350, 508, 554, 636
MroI TCCGGA 1 cut(s) 712
MseI TTAA 4 cut(s) 324, 659, 684, 753
MspA1I CMGCKG 2 cut(s) 398, 587
MspI CCGG 6 cut(s) 240, 245, 424, 451, 532, 713
MspR9I CCNGG 2 cut(s) 121, 424
MvaI CCWGG 1 cut(s) 121
MvnI CGCG 1 cut(s) 374
NciI CCSGG 1 cut(s) 424
NdeII GATC 5 cut(s) 408, 520, 524, 573, 709
NlaIII CATG 1 cut(s) 76
NlaIV GGNNCC 2 cut(s) 293, 361
NmeAIII GCCGAG 1 cut(s) 584
NmuCI GTSAC 1 cut(s) 235
PaeR7I CTCGAG 1 cut(s) 260
PfeI GAWTC 1 cut(s) 265
PflMI CCANNNNNTGG 1 cut(s) 356
PinAI ACCGGT 1 cut(s) 239
PkrI GCNGC 2 cut(s) 400, 586
PleI GAGTC 3 cut(s) 437, 547, 784
PpsI GAGTC 3 cut(s) 437, 547, 784
Psp6I CCWGG 1 cut(s) 119
PspGI CCWGG 1 cut(s) 119
PspN4I GGNNCC 2 cut(s) 293, 361
PspPI GGNCC 1 cut(s) 242
RsaI GTAC 1 cut(s) 281
RsaNI GTAC 1 cut(s) 280
Rsr2I CGGWCCG 1 cut(s) 242
RsrII CGGWCCG 1 cut(s) 242
SaqAI TTAA 4 cut(s) 324, 659, 684, 753
SatI GCNGC 2 cut(s) 399, 585
Sau3AI GATC 5 cut(s) 408, 520, 524, 573, 709
Sau96I GGNCC 1 cut(s) 242
SchI GAGTC 3 cut(s) 438, 547, 785
ScrFI CCNGG 2 cut(s) 121, 424
SfcI CTRYAG 1 cut(s) 183
Sfr274I CTCGAG 1 cut(s) 260
SinI GGWCC 1 cut(s) 242
SlaI CTCGAG 1 cut(s) 260
SmlI CTYRAG 2 cut(s) 101, 260
SmoI CTYRAG 2 cut(s) 101, 260
Sse9I AATT 5 cut(s) 12, 273, 438, 543, 741
SspMI CTAG 1 cut(s) 270
StyD4I CCNGG 2 cut(s) 119, 422
TaaI ACNGT 3 cut(s) 235, 319, 719
TaiI ACGT 7 cut(s) 312, 338, 651, 668, 676, 693, 701
TaqI TCGA 3 cut(s) 261, 436, 523
TasI AATT 5 cut(s) 12, 273, 438, 543, 741
TatI WGTACW 1 cut(s) 279
TauI GCSGC 2 cut(s) 401, 587
TfiI GAWTC 1 cut(s) 265
Tru1I TTAA 4 cut(s) 324, 659, 684, 753
Tru9I TTAA 4 cut(s) 324, 659, 684, 753
TscAI CASTG 1 cut(s) 357
TseFI GTSAC 1 cut(s) 235
Tsp45I GTSAC 1 cut(s) 235
TspDTI ATGAA 2 cut(s) 61, 80
TspGWI ACGGA 2 cut(s) 332, 422
TspRI CASTG 1 cut(s) 357
Van91I CCANNNNNTGG 1 cut(s) 356
VpaK11BI GGWCC 1 cut(s) 242
XapI RAATTY 3 cut(s) 12, 438, 543
XcmI CCANNNNNNNNNTGG 1 cut(s) 117
XhoI CTCGAG 1 cut(s) 260
XspI CTAG 1 cut(s) 270
ZraI GACGTC 5 cut(s) 310, 336, 649, 674, 699
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.