Rh6BG286200
ERF Family

DNA RNA polymerases superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000118
Physical Location & Seq
Reverse (-)
51105326 .. 51105919
594 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG286200.1

Sequence Viewer

Length: 594 bp
ATGGATCCCAGTTTTTTTCTCGATTGGCTAGAAGCTATGGATGATTATTTTGACTGGTATGATATGGATGATACGGAGCATGTGCGGTTTGCAAAGCTGAAATTGGAAGGCTTAGCCAAAAAACAATGGCAGAAAGTAATGCTTCAAATGCACCATATGGGTGAAGCTCCGATTGTCCATTGGACAGAGATGGAGCTCCGGTTGAAAGAAAAATACCTTCCTTACTATTATCGCAGTCAACTCCTCGATCAACTTTTGAATTTTCTGCAAGGTTCACAAACCGTGAGTGACTACATGGCCTGTTTTGAAGAGCTCATGCTAAGTTGTGACATTTTTAAGGAGCCTTATATCATAGTTACTCGATTCCTCAATGGCTTATGGGCTGCCATCAAGCGTGAAGTAACCCTACATTCTCCGAGCACGGTTGACGAAGCTTTCCATAAAGCTTTGGAAGTGGAGAAGTATCTTCGACCACCTCCTACTCGCCTTTTTTTTTTGTACTTCCCAATCCTCTGTTCCATCTTCTTATTCTACTACTTCCGCTCCACCACAAGTCACACAACAAGGCATTACCTCCTCATCTCATCCTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Chromo RVT_1 Retrotrans_gag rve zf-H2C2

Protein Analysis

197

Amino Acids

23.73

Weight (kDa)

5.73

Isoelectric Point (pI)

52.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotrans_gag PF03732 30 - 127 7.8e-12 Retrotransposon gag protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000118)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01361 FvH4_1g07161 FvH4_1g07431 FvH4_1g07821 FvH4_1g08223 FvH4_1g10041 FvH4_1g12132 FvH4_1g15053 FvH4_1g18161 FvH4_1g18400 FvH4_1g18931 FvH4_1g19242 FvH4_1g19461 FvH4_1g20550 FvH4_1g21381 FvH4_1g21542 FvH4_1g22102 FvH4_1g23991 FvH4_1g24542 FvH4_1g24951 FvH4_1g24960 FvH4_1g25272 FvH4_1g25552 FvH4_1g25771 FvH4_1g28771 FvH4_1g29201 FvH4_1g29611 FvH4_2g01181 FvH4_2g02491 FvH4_2g04621 FvH4_2g04631 FvH4_2g07460 FvH4_2g08540 FvH4_2g08550 FvH4_2g09292 FvH4_2g10501 FvH4_2g12101 FvH4_2g12220 FvH4_2g12551 FvH4_2g14071 FvH4_2g14241 FvH4_2g15041 FvH4_2g15311 FvH4_2g18971 FvH4_2g19220 FvH4_2g19260 FvH4_2g19611 FvH4_2g19652 FvH4_2g20211 FvH4_2g20231 FvH4_2g21541 FvH4_2g22380 FvH4_2g27712 FvH4_2g28171 FvH4_2g29879 FvH4_2g32391 FvH4_3g02171 FvH4_3g05531 FvH4_3g09750 FvH4_3g10310 FvH4_3g10460 FvH4_3g13172 FvH4_3g15232 FvH4_3g18481 FvH4_3g18621 FvH4_3g20504 FvH4_3g20812 FvH4_3g22320 FvH4_3g22930 FvH4_3g22940 FvH4_3g23752 FvH4_3g24791 FvH4_3g26411 FvH4_3g26432 FvH4_3g27201 FvH4_3g27862 FvH4_3g28871 FvH4_3g28954 FvH4_3g29131 FvH4_3g29832 FvH4_3g29922 FvH4_3g30190 FvH4_3g32231 FvH4_3g32250 FvH4_3g33460 FvH4_3g34670 FvH4_3g36982 FvH4_3g37001 FvH4_3g38252 FvH4_3g38772 FvH4_3g40141 FvH4_3g40181 FvH4_3g42521 FvH4_4g00090 FvH4_4g00290 FvH4_4g00301 FvH4_4g00530 FvH4_4g00823 FvH4_4g02300 FvH4_4g02450 FvH4_4g03360 FvH4_4g04481 FvH4_4g04761 FvH4_4g06301 FvH4_4g06630 FvH4_4g08312 FvH4_4g08552 FvH4_4g10053 FvH4_4g11971 FvH4_4g13211 FvH4_4g13511 FvH4_4g15351 FvH4_4g16360 FvH4_4g16601 FvH4_4g18462 FvH4_4g22911 FvH4_4g23221 FvH4_4g24301 FvH4_4g24721 FvH4_4g27905 FvH4_4g28971 FvH4_4g29540 FvH4_4g30720 FvH4_4g31521 FvH4_4g33371 FvH4_4g34111 FvH4_4g35740 FvH4_5g00131 FvH4_5g02530 FvH4_5g02550 FvH4_5g02560 FvH4_5g02580 FvH4_5g03783 FvH4_5g05681 FvH4_5g05681 FvH4_5g09371 FvH4_5g09381 FvH4_5g14611 FvH4_5g15341 FvH4_5g19801 FvH4_5g20110 FvH4_5g20911 FvH4_5g22230 FvH4_5g25751 FvH4_5g26070 FvH4_5g26471 FvH4_5g27072 FvH4_5g27471 FvH4_5g27471 FvH4_5g27998 FvH4_5g28291 FvH4_5g30951 FvH4_5g31082 FvH4_5g31890 FvH4_5g32251 FvH4_5g34112 FvH4_5g37184 FvH4_5g37993 FvH4_5g38271 FvH4_6g00153 FvH4_6g00640 FvH4_6g05921 FvH4_6g08591 FvH4_6g09511 FvH4_6g10331 FvH4_6g10401 FvH4_6g14161 FvH4_6g14171 FvH4_6g18481 FvH4_6g19721 FvH4_6g19980 FvH4_6g20104 FvH4_6g20112 FvH4_6g21261 FvH4_6g21651 FvH4_6g22051 FvH4_6g23141 FvH4_6g24822 FvH4_6g25082 FvH4_6g25391 FvH4_6g25560 FvH4_6g26350 FvH4_6g27031 FvH4_6g27810 FvH4_6g27971 FvH4_6g28331 FvH4_6g29391 FvH4_6g30781 FvH4_6g32221 FvH4_6g34680 FvH4_6g36181 FvH4_6g36551 FvH4_6g37491 FvH4_6g37663 FvH4_6g39590 FvH4_6g40582 FvH4_6g43843 FvH4_6g50551 FvH4_7g00240 FvH4_7g00731 FvH4_7g01031 FvH4_7g03301 FvH4_7g08180 FvH4_7g08180 FvH4_7g10631 FvH4_7g19710 FvH4_7g23892 FvH4_7g25280 FvH4_7g25551 FvH4_7g30121 FvH4_7g31931 FvH4_7g32672 FvH4_c21g00040 FvH4_c2g00053
prunus_persica Prupe.1G448800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322451 RchiOBHm_Chr5g0015171
rosa_laevigata RLG00000003077 RLG00000018186 RLG00000030343
rosa_multiflora Rmu_co8096726.1_g000001
rosa_roxburghii Rroxscaffold_157G00438380 Rroxscaffold_1G00001730 Rroxscaffold_3G00236310
rosa_rugosa Rorug02G0236500
rosa_samantha Rh4BG247300 Rh6BG286200 Rh6CG287300 Rh7DG257500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 543
AciI CCGC 2 cut(s) 85, 541
AclWI GGATC 1 cut(s) 12
AcsI RAATTY 1 cut(s) 259
AfaI GTAC 1 cut(s) 500
AgsI TTSAA 4 cut(s) 146, 205, 259, 308
AjuI GAANNNNNNNTTGG 2 cut(s) 499, 531
AluBI AGCT 7 cut(s) 35, 97, 167, 196, 313, 434, 446
AluI AGCT 7 cut(s) 35, 97, 167, 196, 313, 434, 446
Alw21I GWGCWC 3 cut(s) 198, 315, 422
AlwI GGATC 1 cut(s) 12
AoxI GGCC 1 cut(s) 297
ApeKI GCWGC 1 cut(s) 383
ApoI RAATTY 1 cut(s) 259
AsuHPI GGTGA 1 cut(s) 173
BamHI GGATCC 1 cut(s) 4
BanII GRGCYC 2 cut(s) 198, 315
BarI GAAGNNNNNNTAC 2 cut(s) 390, 422
Bbv12I GWGCWC 3 cut(s) 198, 315, 422
BbvI GCAGC 1 cut(s) 370
BccI CCATC 3 cut(s) 184, 395, 527
BfaI CTAG 1 cut(s) 29
BisI GCNGC 1 cut(s) 384
BlpI GCTNAGC 1 cut(s) 112
BlsI GCNGC 1 cut(s) 385
BmiI GGNNCC 2 cut(s) 6, 342
BmrI ACTGGG 1 cut(s) 3
BmuI ACTGGG 1 cut(s) 3
Bpu1102I GCTNAGC 1 cut(s) 112
BsaWI WCCGGW 1 cut(s) 198
BsaXI ACNNNNNCTCC 4 cut(s) 185, 215, 527, 557
Bse1I ACTGG 2 cut(s) 9, 59
BseGI GGATG 3 cut(s) 46, 73, 584
BseNI ACTGG 2 cut(s) 9, 59
BseRI GAGGAG 2 cut(s) 233, 566
BseXI GCAGC 1 cut(s) 370
BshFI GGCC 1 cut(s) 299
BsiHKAI GWGCWC 3 cut(s) 198, 315, 422
BsiSI CCGG 1 cut(s) 199
BsnI GGCC 1 cut(s) 299
Bsp1286I GDGCHC 3 cut(s) 198, 315, 422
Bsp143I GATC 2 cut(s) 4, 247
Bsp1720I GCTNAGC 1 cut(s) 112
BspACI CCGC 2 cut(s) 85, 541
BspANI GGCC 1 cut(s) 299
BspLI GGNNCC 2 cut(s) 6, 342
BspPI GGATC 1 cut(s) 12
BspQI GCTCTTC 1 cut(s) 303
BsrBI CCGCTC 1 cut(s) 543
BsrI ACTGG 2 cut(s) 9, 59
BssMI GATC 2 cut(s) 4, 247
Bst4CI ACNGT 2 cut(s) 283, 424
Bst6I CTCTTC 1 cut(s) 303
BstDEI CTNAG 2 cut(s) 112, 320
BstF5I GGATG 3 cut(s) 46, 73, 584
BstKTI GATC 2 cut(s) 7, 250
BstMBI GATC 2 cut(s) 4, 247
BstMWI GCNNNNNNNGC 1 cut(s) 148
BstNSI RCATGY 1 cut(s) 83
BstV1I GCAGC 1 cut(s) 370
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
BsuRI GGCC 1 cut(s) 299
BtsCI GGATG 3 cut(s) 46, 73, 584
Csp6I GTAC 1 cut(s) 499
CviAII CATG 3 cut(s) 80, 295, 316
CviQI GTAC 1 cut(s) 499
DdeI CTNAG 2 cut(s) 112, 320
DpnI GATC 2 cut(s) 6, 249
DpnII GATC 2 cut(s) 4, 247
Eam1104I CTCTTC 1 cut(s) 303
EarI CTCTTC 1 cut(s) 303
Ecl136II GAGCTC 2 cut(s) 196, 313
Eco24I GRGCYC 2 cut(s) 198, 315
Eco53kI GAGCTC 2 cut(s) 196, 313
EcoICRI GAGCTC 2 cut(s) 196, 313
EcoT38I GRGCYC 2 cut(s) 198, 315
FaeI CATG 3 cut(s) 83, 298, 319
FalI AAGNNNNNCTT 2 cut(s) 126, 158
FatI CATG 3 cut(s) 79, 294, 315
FauNDI CATATG 1 cut(s) 156
Fnu4HI GCNGC 1 cut(s) 384
FokI GGATG 3 cut(s) 53, 80, 571
FriOI GRGCYC 2 cut(s) 198, 315
Fsp4HI GCNGC 1 cut(s) 384
FspBI CTAG 1 cut(s) 29
GluI GCNGC 1 cut(s) 384
HaeIII GGCC 1 cut(s) 299
HapII CCGG 1 cut(s) 199
Hin1II CATG 3 cut(s) 83, 298, 319
HincII GTYRAC 2 cut(s) 239, 427
HindII GTYRAC 2 cut(s) 239, 427
HindIII AAGCTT 2 cut(s) 432, 444
HinfI GANTC 1 cut(s) 363
HpaII CCGG 1 cut(s) 199
HphI GGTGA 1 cut(s) 173
Hpy166II GTNNAC 3 cut(s) 239, 275, 427
Hpy188I TCNGA 2 cut(s) 171, 417
Hpy188III TCNNGA 1 cut(s) 20
Hpy8I GTNNAC 3 cut(s) 239, 275, 427
HpyAV CCTTC 2 cut(s) 101, 227
HpyCH4III ACNGT 2 cut(s) 283, 424
HpyCH4V TGCA 3 cut(s) 92, 151, 268
HpyF10VI GCNNNNNNNGC 1 cut(s) 148
HpyF3I CTNAG 2 cut(s) 112, 320
Hsp92II CATG 3 cut(s) 83, 298, 319
Kzo9I GATC 2 cut(s) 4, 247
LguI GCTCTTC 1 cut(s) 303
LmnI GCTCC 6 cut(s) 76, 172, 193, 201, 340, 548
LpnPI CCDG 4 cut(s) 22, 40, 212, 313
Lsp1109I GCAGC 1 cut(s) 370
MaeI CTAG 1 cut(s) 29
MaeIII GTNAC 5 cut(s) 287, 326, 355, 400, 554
MalI GATC 2 cut(s) 6, 249
MbiI CCGCTC 1 cut(s) 543
MboI GATC 2 cut(s) 4, 247
MboII GAAGA 3 cut(s) 320, 458, 514
MflI RGATCY 1 cut(s) 4
MhlI GDGCHC 3 cut(s) 198, 315, 422
MluCI AATT 2 cut(s) 101, 259
MnlI CCTC 6 cut(s) 254, 377, 486, 521, 584, 587
MseI TTAA 1 cut(s) 336
MslI CAYNNNNRTG 1 cut(s) 159
MspI CCGG 1 cut(s) 199
MwoI GCNNNNNNNGC 1 cut(s) 148
NdeI CATATG 1 cut(s) 156
NdeII GATC 2 cut(s) 4, 247
NlaIII CATG 3 cut(s) 83, 298, 319
NlaIV GGNNCC 2 cut(s) 6, 342
NmuCI GTSAC 3 cut(s) 287, 326, 554
NspI RCATGY 1 cut(s) 83
PciSI GCTCTTC 1 cut(s) 303
PfeI GAWTC 1 cut(s) 363
PkrI GCNGC 1 cut(s) 385
Psp124BI GAGCTC 2 cut(s) 198, 315
PspN4I GGNNCC 2 cut(s) 6, 342
PsuI RGATCY 1 cut(s) 4
RsaI GTAC 1 cut(s) 500
RsaNI GTAC 1 cut(s) 499
RseI CAYNNNNRTG 1 cut(s) 159
SacI GAGCTC 2 cut(s) 198, 315
SapI GCTCTTC 1 cut(s) 303
SaqAI TTAA 1 cut(s) 336
SatI GCNGC 1 cut(s) 384
Sau3AI GATC 2 cut(s) 4, 247
SduI GDGCHC 3 cut(s) 198, 315, 422
SmiMI CAYNNNNRTG 1 cut(s) 159
Sse9I AATT 2 cut(s) 101, 259
SsiI CCGC 2 cut(s) 85, 541
SspMI CTAG 1 cut(s) 29
SstI GAGCTC 2 cut(s) 198, 315
TaaI ACNGT 2 cut(s) 283, 424
TaqI TCGA 4 cut(s) 21, 246, 361, 469
TasI AATT 2 cut(s) 101, 259
TatI WGTACW 1 cut(s) 498
TfiI GAWTC 1 cut(s) 363
Tru1I TTAA 1 cut(s) 336
Tru9I TTAA 1 cut(s) 336
TseFI GTSAC 3 cut(s) 287, 326, 554
TseI GCWGC 1 cut(s) 383
Tsp45I GTSAC 3 cut(s) 287, 326, 554
TspGWI ACGGA 1 cut(s) 89
XapI RAATTY 1 cut(s) 259
XceI RCATGY 1 cut(s) 83
XspI CTAG 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.