Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0000118

Physical Location & Seq

Genomic Coordinates Reverse (-)

29527555 .. 29527866

Gene Structure 312 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g37491.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGTCCCTCCTTTCGCCACCGTATGGCACCGGTGAGCACCGGCGAGGGCACTCCTCCACCCTAGCAGACTCCAGCAGCTTCCTCGACCTCTTTCCATCTCCGGCGAGTCAGCTGAATTCCAGTTTTCCGACCAGATCACCCAAAACTTCAAACAAAGTCAATCTGGCCGGAAAATTGGAATTCGGCGGACTCGTCGGGGATGGAAAGTGGTCGGGGAAGCTGCTGGAGTCCGCTAGGGTGGAGGCGCGCCCTCGCGGCGCTGTACGGTGGCGAAAGGAGGGACATCTGCACGGTGCGGACGTCCGCACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005801 GO:0005886 GO:0006810 GO:0008150 GO:0008515 GO:0008643 GO:0009705 GO:0012505 GO:0015144 GO:0015154 GO:0015157 GO:0015766 GO:0015770 GO:0015772 GO:0016020 GO:0022857 GO:0031090 GO:0034219 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_1 MFS_2

Protein Analysis

104

Amino Acids

11.1

Weight (kDa)

10.34

Isoelectric Point (pI)

53.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000118)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g01361 FvH4_1g07161 FvH4_1g07431 FvH4_1g07821 FvH4_1g08223 FvH4_1g10041 FvH4_1g12132 FvH4_1g15053 FvH4_1g18161 FvH4_1g18400 FvH4_1g18931 FvH4_1g19242 FvH4_1g19461 FvH4_1g20550 FvH4_1g21381 FvH4_1g21542 FvH4_1g22102 FvH4_1g23991 FvH4_1g24542 FvH4_1g24951 FvH4_1g24960 FvH4_1g25272 FvH4_1g25552 FvH4_1g25771 FvH4_1g28771 FvH4_1g29201 FvH4_1g29611 FvH4_2g01181 FvH4_2g02491 FvH4_2g04621 FvH4_2g04631 FvH4_2g07460 FvH4_2g08540 FvH4_2g08550 FvH4_2g09292 FvH4_2g10501 FvH4_2g12101 FvH4_2g12220 FvH4_2g12551 FvH4_2g14071 FvH4_2g14241 FvH4_2g15041 FvH4_2g15311 FvH4_2g18971 FvH4_2g19220 FvH4_2g19260 FvH4_2g19611 FvH4_2g19652 FvH4_2g20211 FvH4_2g20231 FvH4_2g21541 FvH4_2g22380 FvH4_2g27712 FvH4_2g28171 FvH4_2g29879 FvH4_2g32391 FvH4_3g02171 FvH4_3g05531 FvH4_3g09750 FvH4_3g10310 FvH4_3g10460 FvH4_3g13172 FvH4_3g15232 FvH4_3g18481 FvH4_3g18621 FvH4_3g20504 FvH4_3g20812 FvH4_3g22320 FvH4_3g22930 FvH4_3g22940 FvH4_3g23752 FvH4_3g24791 FvH4_3g26411 FvH4_3g26432 FvH4_3g27201 FvH4_3g27862 FvH4_3g28871 FvH4_3g28954 FvH4_3g29131 FvH4_3g29832 FvH4_3g29922 FvH4_3g30190 FvH4_3g32231 FvH4_3g32250 FvH4_3g33460 FvH4_3g34670 FvH4_3g36982 FvH4_3g37001 FvH4_3g38252 FvH4_3g38772 FvH4_3g40141 FvH4_3g40181 FvH4_3g42521 FvH4_4g00090 FvH4_4g00290 FvH4_4g00301 FvH4_4g00530 FvH4_4g00823 FvH4_4g02300 FvH4_4g02450 FvH4_4g03360 FvH4_4g04481 FvH4_4g04761 FvH4_4g06301 FvH4_4g06630 FvH4_4g08312 FvH4_4g08552 FvH4_4g10053 FvH4_4g11971 FvH4_4g13211 FvH4_4g13511 FvH4_4g15351 FvH4_4g16360 FvH4_4g16601 FvH4_4g18462 FvH4_4g22911 FvH4_4g23221 FvH4_4g24301 FvH4_4g24721 FvH4_4g27905 FvH4_4g28971 FvH4_4g29540 FvH4_4g30720 FvH4_4g31521 FvH4_4g33371 FvH4_4g34111 FvH4_4g35740 FvH4_5g00131 FvH4_5g02530 FvH4_5g02550 FvH4_5g02560 FvH4_5g02580 FvH4_5g03783 FvH4_5g05681 FvH4_5g05681 FvH4_5g09371 FvH4_5g09381 FvH4_5g14611 FvH4_5g15341 FvH4_5g19801 FvH4_5g20110 FvH4_5g20911 FvH4_5g22230 FvH4_5g25751 FvH4_5g26070 FvH4_5g26471 FvH4_5g27072 FvH4_5g27471 FvH4_5g27471 FvH4_5g27998 FvH4_5g28291 FvH4_5g30951 FvH4_5g31082 FvH4_5g31890 FvH4_5g32251 FvH4_5g34112 FvH4_5g37184 FvH4_5g37993 FvH4_5g38271 FvH4_6g00153 FvH4_6g00640 FvH4_6g05921 FvH4_6g08591 FvH4_6g09511 FvH4_6g10331 FvH4_6g10401 FvH4_6g14161 FvH4_6g14171 FvH4_6g18481 FvH4_6g19721 FvH4_6g19980 FvH4_6g20104 FvH4_6g20112 FvH4_6g21261 FvH4_6g21651 FvH4_6g22051 FvH4_6g23141 FvH4_6g24822 FvH4_6g25082 FvH4_6g25391 FvH4_6g25560 FvH4_6g26350 FvH4_6g27031 FvH4_6g27810 FvH4_6g27971 FvH4_6g28331 FvH4_6g29391 FvH4_6g30781 FvH4_6g32221 FvH4_6g34680 FvH4_6g36181 FvH4_6g36551 FvH4_6g37491 FvH4_6g37663 FvH4_6g39590 FvH4_6g40582 FvH4_6g43843 FvH4_6g50551 FvH4_7g00240 FvH4_7g00731 FvH4_7g01031 FvH4_7g03301 FvH4_7g08180 FvH4_7g08180 FvH4_7g10631 FvH4_7g19710 FvH4_7g23892 FvH4_7g25280 FvH4_7g25551 FvH4_7g30121 FvH4_7g31931 FvH4_7g32672 FvH4_c21g00040 FvH4_c2g00053
prunus_persica	Prupe.1G448800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0322451 RchiOBHm_Chr5g0015171
rosa_laevigata	RLG00000003077 RLG00000018186 RLG00000030343
rosa_multiflora	Rmu_co8096726.1_g000001
rosa_roxburghii	Rroxscaffold_157G00438380 Rroxscaffold_1G00001730 Rroxscaffold_3G00236310
rosa_rugosa	Rorug02G0236500
rosa_samantha	Rh4BG247300 Rh6BG286200 Rh6CG287300 Rh7DG257500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	303
AccB1I	GGYRCC	1 cut(s)	26
AccB7I	CCANNNNNTGG	1 cut(s)	23
AccII	CGCG	2 cut(s)	247, 255
AciI	CCGC	5 cut(s)	186, 231, 255, 296, 304
AcoI	YGGCCR	1 cut(s)	165
AcsI	RAATTY	2 cut(s)	115, 179
AcyI	GRCGYC	1 cut(s)	300
AfaI	GTAC	1 cut(s)	264
AfiI	CCNNNNNNNGG	1 cut(s)	23
AgeI	ACCGGT	1 cut(s)	29
AgsI	TTSAA	1 cut(s)	150
AluBI	AGCT	3 cut(s)	78, 112, 220
AluI	AGCT	3 cut(s)	78, 112, 220
Alw21I	GWGCWC	1 cut(s)	39
AoxI	GGCC	1 cut(s)	165
ApeKI	GCWGC	2 cut(s)	75, 220
ApoI	RAATTY	2 cut(s)	115, 179
AscI	GGCGCGCC	1 cut(s)	245
AsiGI	ACCGGT	1 cut(s)	29
AspLEI	GCGC	3 cut(s)	247, 249, 260
AsuHPI	GGTGA	2 cut(s)	44, 129
BaeGI	GKGCMC	1 cut(s)	51
BanI	GGYRCC	1 cut(s)	26
Bbv12I	GWGCWC	1 cut(s)	39
BbvI	GCAGC	2 cut(s)	87, 207
BccI	CCATC	2 cut(s)	103, 194
BcgI	CGANNNNNNTGC	2 cut(s)	64, 98
BfaI	CTAG	2 cut(s)	62, 234
BfoI	RGCGCY	1 cut(s)	261
BglI	GCCNNNNNGGC	1 cut(s)	255
BisI	GCNGC	3 cut(s)	76, 221, 256
BlsI	GCNGC	3 cut(s)	77, 222, 257
BmiI	GGNNCC	1 cut(s)	28
BpmI	CTGGAG	2 cut(s)	55, 245
BsaHI	GRCGYC	1 cut(s)	300
BsaWI	WCCGGW	1 cut(s)	29
Bsc4I	CCNNNNNNNGG	1 cut(s)	23
Bse118I	RCCGGY	2 cut(s)	29, 39
Bse1I	ACTGG	1 cut(s)	120
BseGI	GGATG	1 cut(s)	205
BseLI	CCNNNNNNNGG	1 cut(s)	23
BseNI	ACTGG	1 cut(s)	120
BsePI	GCGCGC	1 cut(s)	245
BseRI	GAGGAG	1 cut(s)	43
BseSI	GKGCMC	1 cut(s)	51
BseXI	GCAGC	2 cut(s)	87, 207
BsgI	GTGCAG	1 cut(s)	272
Bsh1236I	CGCG	2 cut(s)	247, 255
BshFI	GGCC	1 cut(s)	167
BshNI	GGYRCC	1 cut(s)	26
BshTI	ACCGGT	1 cut(s)	29
BsiHKAI	GWGCWC	1 cut(s)	39
BsiSI	CCGG	4 cut(s)	30, 40, 101, 168
BslFI	GGGAC	1 cut(s)	294
BslI	CCNNNNNNNGG	1 cut(s)	23
BsmFI	GGGAC	1 cut(s)	294
BsnI	GGCC	1 cut(s)	167
Bsp1286I	GDGCHC	2 cut(s)	39, 51
Bsp143I	GATC	1 cut(s)	134
BspACI	CCGC	5 cut(s)	186, 231, 255, 296, 304
BspANI	GGCC	1 cut(s)	167
BspFNI	CGCG	2 cut(s)	247, 255
BspLI	GGNNCC	1 cut(s)	28
BspT107I	GGYRCC	1 cut(s)	26
BsrFI	RCCGGY	2 cut(s)	29, 39
BsrI	ACTGG	1 cut(s)	120
BssAI	RCCGGY	2 cut(s)	29, 39
BssHII	GCGCGC	1 cut(s)	245
BssMI	GATC	1 cut(s)	134
BssNI	GRCGYC	1 cut(s)	300
Bst4CI	ACNGT	3 cut(s)	21, 267, 293
BstACI	GRCGYC	1 cut(s)	300
BstC8I	GCNNGC	1 cut(s)	247
BstF5I	GGATG	1 cut(s)	205
BstFNI	CGCG	2 cut(s)	247, 255
BstH2I	RGCGCY	1 cut(s)	261
BstHHI	GCGC	3 cut(s)	247, 249, 260
BstKTI	GATC	1 cut(s)	137
BstMBI	GATC	1 cut(s)	134
BstMWI	GCNNNNNNNGC	1 cut(s)	255
BstSLI	GKGCMC	1 cut(s)	51
BstUI	CGCG	2 cut(s)	247, 255
BstV1I	GCAGC	2 cut(s)	87, 207
BsuRI	GGCC	1 cut(s)	167
BtsCI	GGATG	1 cut(s)	205
Cac8I	GCNNGC	1 cut(s)	247
CfoI	GCGC	3 cut(s)	247, 249, 260
Cfr10I	RCCGGY	2 cut(s)	29, 39
Csp6I	GTAC	1 cut(s)	263
CspAI	ACCGGT	1 cut(s)	29
CviJI	RGCY	4 cut(s)	78, 112, 167, 220
CviKI_1	RGCY	4 cut(s)	78, 112, 167, 220
CviQI	GTAC	1 cut(s)	263
DpnI	GATC	1 cut(s)	136
DpnII	GATC	1 cut(s)	134
EaeI	YGGCCR	1 cut(s)	165
EciI	GGCGGA	1 cut(s)	201
EcoRI	GAATTC	2 cut(s)	115, 179
FaiI	YATR	1 cut(s)	24
FaqI	GGGAC	1 cut(s)	294
Fnu4HI	GCNGC	3 cut(s)	76, 221, 256
FokI	GGATG	1 cut(s)	212
Fsp4HI	GCNGC	3 cut(s)	76, 221, 256
FspBI	CTAG	2 cut(s)	62, 234
GlaI	GCGC	3 cut(s)	246, 248, 259
GluI	GCNGC	3 cut(s)	76, 221, 256
GsuI	CTGGAG	2 cut(s)	55, 245
HaeII	RGCGCY	1 cut(s)	261
HaeIII	GGCC	1 cut(s)	167
HapII	CCGG	4 cut(s)	30, 40, 101, 168
HhaI	GCGC	3 cut(s)	247, 249, 260
Hin1I	GRCGYC	1 cut(s)	300
Hin6I	GCGC	3 cut(s)	245, 247, 258
HinP1I	GCGC	3 cut(s)	245, 247, 258
HinfI	GANTC	4 cut(s)	68, 106, 189, 227
HpaII	CCGG	4 cut(s)	30, 40, 101, 168
HphI	GGTGA	2 cut(s)	44, 129
Hpy188I	TCNGA	1 cut(s)	129
Hpy99I	CGWCG	1 cut(s)	197
HpyCH4III	ACNGT	3 cut(s)	21, 267, 293
HpyCH4IV	ACGT	1 cut(s)	300
HpyCH4V	TGCA	1 cut(s)	289
HpyF10VI	GCNNNNNNNGC	1 cut(s)	255
HpySE526I	ACGT	1 cut(s)	300
Hsp92I	GRCGYC	1 cut(s)	300
HspAI	GCGC	3 cut(s)	245, 247, 258
Kzo9I	GATC	1 cut(s)	134
LpnPI	CCDG	9 cut(s)	43, 53, 85, 114, 133, 145, 149, 181, 209
Lsp1109I	GCAGC	2 cut(s)	87, 207
MaeI	CTAG	2 cut(s)	62, 234
MaeII	ACGT	1 cut(s)	300
MalI	GATC	1 cut(s)	136
MboI	GATC	1 cut(s)	134
MhlI	GDGCHC	2 cut(s)	39, 51
MluCI	AATT	3 cut(s)	115, 173, 179
MlyI	GAGTC	4 cut(s)	62, 115, 183, 236
MmeI	TCCRAC	1 cut(s)	152
MnlI	CCTC	8 cut(s)	17, 38, 64, 92, 98, 235, 261, 271
MspA1I	CMGCKG	1 cut(s)	112
MspI	CCGG	4 cut(s)	30, 40, 101, 168
MvnI	CGCG	2 cut(s)	247, 255
MwoI	GCNNNNNNNGC	1 cut(s)	255
NdeII	GATC	1 cut(s)	134
NlaIV	GGNNCC	1 cut(s)	28
PalAI	GGCGCGCC	1 cut(s)	245
PauI	GCGCGC	1 cut(s)	245
PcsI	WCGNNNNNNNCGW	2 cut(s)	189, 297
PflMI	CCANNNNNTGG	1 cut(s)	23
PinAI	ACCGGT	1 cut(s)	29
PkrI	GCNGC	3 cut(s)	77, 222, 257
PleI	GAGTC	4 cut(s)	62, 114, 183, 235
PpsI	GAGTC	4 cut(s)	62, 114, 183, 235
PspN4I	GGNNCC	1 cut(s)	28
PteI	GCGCGC	1 cut(s)	245
PvuII	CAGCTG	1 cut(s)	112
RsaI	GTAC	1 cut(s)	264
RsaNI	GTAC	1 cut(s)	263
SatI	GCNGC	3 cut(s)	76, 221, 256
Sau3AI	GATC	1 cut(s)	134
SchI	GAGTC	4 cut(s)	62, 115, 183, 236
SduI	GDGCHC	2 cut(s)	39, 51
SetI	ASST	6 cut(s)	80, 90, 114, 222, 303, 311
SgrAI	CRCCGGYG	2 cut(s)	29, 39
SgsI	GGCGCGCC	1 cut(s)	245
Sse9I	AATT	3 cut(s)	115, 173, 179
SsiI	CCGC	5 cut(s)	186, 231, 255, 296, 304
SspMI	CTAG	2 cut(s)	62, 234
TaaI	ACNGT	3 cut(s)	21, 267, 293
TaiI	ACGT	1 cut(s)	303
TaqI	TCGA	1 cut(s)	84
TasI	AATT	3 cut(s)	115, 173, 179
TauI	GCSGC	1 cut(s)	258
TseI	GCWGC	2 cut(s)	75, 220
Van91I	CCANNNNNTGG	1 cut(s)	23
XapI	RAATTY	2 cut(s)	115, 179
XspI	CTAG	2 cut(s)	62, 234
ZraI	GACGTC	1 cut(s)	301

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.