FvH4_6g24822

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000118
Physical Location & Seq
Reverse (-)
18811182 .. 18812410
1229 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g24822.t1

Sequence Viewer

Length: 549 bp
ATGCGTGTTGGTGGTGTCGGCAGCACCAGCATGTCGCGACAAAATGTCGCTAATCACACGCAAGGATTTGGCGCCTATTCATCCGTGGGAGAAACGCTCCTTGCAGGCGCGTCAAAGAGGGGGTCGCATGTCACTGACGTCGCCCACATGTGTGGGCTCGGGCTAAGGTGGAAGAAAGTCGCCTGGGTTGAATTGGGGAGAGGAAGAAAAGTAACTGTAGTACCGTTTCCCAGCGAGCATCGACTCACTTCCCTCCTCTTCCTCTCGAGTAAGTGCCATTTTGATCACTGTGGCTATGAAACGAGGCAACTCAGAATCGTCCTCAACCTCTCTTGGGCCTCCTCAATCGAATCTGCTCTGTATTGGGTTGCTGGGAAAGTTATTGAAACGGATAAAGATGAAGGCTTTCAATGTGAGACATTGTACTCTCAGAGGATTCAAATTTCTTGGAGGATGAGACCACAAAGATTTTTGCACGAAAAGTGGCTGATCATTATAGTGCAAGGAAAATTGCAAGGAAAATCAATCTCTGGAAGAACGAGAAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

183

Amino Acids

20.45

Weight (kDa)

10.02

Isoelectric Point (pI)

32.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000118)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01361 FvH4_1g07161 FvH4_1g07431 FvH4_1g07821 FvH4_1g08223 FvH4_1g10041 FvH4_1g12132 FvH4_1g15053 FvH4_1g18161 FvH4_1g18400 FvH4_1g18931 FvH4_1g19242 FvH4_1g19461 FvH4_1g20550 FvH4_1g21381 FvH4_1g21542 FvH4_1g22102 FvH4_1g23991 FvH4_1g24542 FvH4_1g24951 FvH4_1g24960 FvH4_1g25272 FvH4_1g25552 FvH4_1g25771 FvH4_1g28771 FvH4_1g29201 FvH4_1g29611 FvH4_2g01181 FvH4_2g02491 FvH4_2g04621 FvH4_2g04631 FvH4_2g07460 FvH4_2g08540 FvH4_2g08550 FvH4_2g09292 FvH4_2g10501 FvH4_2g12101 FvH4_2g12220 FvH4_2g12551 FvH4_2g14071 FvH4_2g14241 FvH4_2g15041 FvH4_2g15311 FvH4_2g18971 FvH4_2g19220 FvH4_2g19260 FvH4_2g19611 FvH4_2g19652 FvH4_2g20211 FvH4_2g20231 FvH4_2g21541 FvH4_2g22380 FvH4_2g27712 FvH4_2g28171 FvH4_2g29879 FvH4_2g32391 FvH4_3g02171 FvH4_3g05531 FvH4_3g09750 FvH4_3g10310 FvH4_3g10460 FvH4_3g13172 FvH4_3g15232 FvH4_3g18481 FvH4_3g18621 FvH4_3g20504 FvH4_3g20812 FvH4_3g22320 FvH4_3g22930 FvH4_3g22940 FvH4_3g23752 FvH4_3g24791 FvH4_3g26411 FvH4_3g26432 FvH4_3g27201 FvH4_3g27862 FvH4_3g28871 FvH4_3g28954 FvH4_3g29131 FvH4_3g29832 FvH4_3g29922 FvH4_3g30190 FvH4_3g32231 FvH4_3g32250 FvH4_3g33460 FvH4_3g34670 FvH4_3g36982 FvH4_3g37001 FvH4_3g38252 FvH4_3g38772 FvH4_3g40141 FvH4_3g40181 FvH4_3g42521 FvH4_4g00090 FvH4_4g00290 FvH4_4g00301 FvH4_4g00530 FvH4_4g00823 FvH4_4g02300 FvH4_4g02450 FvH4_4g03360 FvH4_4g04481 FvH4_4g04761 FvH4_4g06301 FvH4_4g06630 FvH4_4g08312 FvH4_4g08552 FvH4_4g10053 FvH4_4g11971 FvH4_4g13211 FvH4_4g13511 FvH4_4g15351 FvH4_4g16360 FvH4_4g16601 FvH4_4g18462 FvH4_4g22911 FvH4_4g23221 FvH4_4g24301 FvH4_4g24721 FvH4_4g27905 FvH4_4g28971 FvH4_4g29540 FvH4_4g30720 FvH4_4g31521 FvH4_4g33371 FvH4_4g34111 FvH4_4g35740 FvH4_5g00131 FvH4_5g02530 FvH4_5g02550 FvH4_5g02560 FvH4_5g02580 FvH4_5g03783 FvH4_5g05681 FvH4_5g05681 FvH4_5g09371 FvH4_5g09381 FvH4_5g14611 FvH4_5g15341 FvH4_5g19801 FvH4_5g20110 FvH4_5g20911 FvH4_5g22230 FvH4_5g25751 FvH4_5g26070 FvH4_5g26471 FvH4_5g27072 FvH4_5g27471 FvH4_5g27471 FvH4_5g27998 FvH4_5g28291 FvH4_5g30951 FvH4_5g31082 FvH4_5g31890 FvH4_5g32251 FvH4_5g34112 FvH4_5g37184 FvH4_5g37993 FvH4_5g38271 FvH4_6g00153 FvH4_6g00640 FvH4_6g05921 FvH4_6g08591 FvH4_6g09511 FvH4_6g10331 FvH4_6g10401 FvH4_6g14161 FvH4_6g14171 FvH4_6g18481 FvH4_6g19721 FvH4_6g19980 FvH4_6g20104 FvH4_6g20112 FvH4_6g21261 FvH4_6g21651 FvH4_6g22051 FvH4_6g23141 FvH4_6g24822 FvH4_6g25082 FvH4_6g25391 FvH4_6g25560 FvH4_6g26350 FvH4_6g27031 FvH4_6g27810 FvH4_6g27971 FvH4_6g28331 FvH4_6g29391 FvH4_6g30781 FvH4_6g32221 FvH4_6g34680 FvH4_6g36181 FvH4_6g36551 FvH4_6g37491 FvH4_6g37663 FvH4_6g39590 FvH4_6g40582 FvH4_6g43843 FvH4_6g50551 FvH4_7g00240 FvH4_7g00731 FvH4_7g01031 FvH4_7g03301 FvH4_7g08180 FvH4_7g08180 FvH4_7g10631 FvH4_7g19710 FvH4_7g23892 FvH4_7g25280 FvH4_7g25551 FvH4_7g30121 FvH4_7g31931 FvH4_7g32672 FvH4_c21g00040 FvH4_c2g00053
prunus_persica Prupe.1G448800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322451 RchiOBHm_Chr5g0015171
rosa_laevigata RLG00000003077 RLG00000018186 RLG00000030343
rosa_multiflora Rmu_co8096726.1_g000001
rosa_roxburghii Rroxscaffold_157G00438380 Rroxscaffold_1G00001730 Rroxscaffold_3G00236310
rosa_rugosa Rorug02G0236500
rosa_samantha Rh4BG247300 Rh6BG286200 Rh6CG287300 Rh7DG257500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 141
AccB1I GGYRCC 1 cut(s) 71
AccII CGCG 2 cut(s) 37, 110
AcsI RAATTY 1 cut(s) 441
AcyI GRCGYC 2 cut(s) 72, 138
AfaI GTAC 2 cut(s) 222, 425
AfiI CCNNNNNNNGG 1 cut(s) 334
AflIII ACRYGT 1 cut(s) 147
AgsI TTSAA 4 cut(s) 191, 386, 410, 440
AhdI GACNNNNNGTC 1 cut(s) 44
AjnI CCWGG 1 cut(s) 182
AleI CACNNNNGTG 1 cut(s) 150
AluBI AGCT 1 cut(s) 546
AluI AGCT 1 cut(s) 546
Alw26I GTCTC 2 cut(s) 410, 451
Ama87I CYCGRG 2 cut(s) 158, 265
AoxI GGCC 1 cut(s) 336
ApeKI GCWGC 1 cut(s) 21
ApoI RAATTY 1 cut(s) 441
ArsI GACNNNNNNTTYG 2 cut(s) 107, 139
Asp700I GAANNNNTTC 1 cut(s) 405
AspLEI GCGC 2 cut(s) 74, 110
AspS9I GGNCC 1 cut(s) 336
AvaI CYCGRG 2 cut(s) 158, 265
BaeI ACNNNNGTAYC 2 cut(s) 204, 237
BanI GGYRCC 1 cut(s) 71
BanII GRGCYC 1 cut(s) 159
BbvI GCAGC 1 cut(s) 33
BciT130I CCWGG 1 cut(s) 184
BclI TGATCA 2 cut(s) 283, 489
BcoDI GTCTC 2 cut(s) 410, 451
BfaI CTAG 1 cut(s) 547
BfmI CTRYAG 1 cut(s) 216
BfoI RGCGCY 1 cut(s) 75
BisI GCNGC 1 cut(s) 22
BlsI GCNGC 1 cut(s) 23
Bme1390I CCNGG 1 cut(s) 184
BmeRI GACNNNNNGTC 1 cut(s) 44
BmeT110I CYCGRG 2 cut(s) 158, 265
BmgT120I GGNCC 1 cut(s) 336
BmiI GGNNCC 1 cut(s) 73
BmrFI CCNGG 1 cut(s) 184
BmsI GCATC 1 cut(s) 247
BplI GAGNNNNNCTC 2 cut(s) 81, 113
Bpu10I CCTNAGC 1 cut(s) 164
BsaHI GRCGYC 2 cut(s) 72, 138
BsaI GGTCTC 1 cut(s) 451
BsaJI CCNNGG 2 cut(s) 84, 183
Bsc4I CCNNNNNNNGG 1 cut(s) 334
BseBI CCWGG 1 cut(s) 184
BseDI CCNNGG 2 cut(s) 84, 183
BseGI GGATG 2 cut(s) 80, 459
BseLI CCNNNNNNNGG 1 cut(s) 334
BseMII CTCAG 2 cut(s) 325, 443
BseRI GAGGAG 2 cut(s) 245, 331
BseXI GCAGC 1 cut(s) 33
BseYI CCCAGC 2 cut(s) 230, 371
Bsh1236I CGCG 2 cut(s) 37, 110
BshFI GGCC 1 cut(s) 338
BshNI GGYRCC 1 cut(s) 71
BsiHKCI CYCGRG 2 cut(s) 158, 265
BslI CCNNNNNNNGG 1 cut(s) 334
BsmAI GTCTC 2 cut(s) 410, 451
BsnI GGCC 1 cut(s) 338
Bso31I GGTCTC 1 cut(s) 451
BsoBI CYCGRG 2 cut(s) 158, 265
Bsp1286I GDGCHC 1 cut(s) 159
Bsp143I GATC 2 cut(s) 283, 489
Bsp68I TCGCGA 1 cut(s) 37
BspANI GGCC 1 cut(s) 338
BspCNI CTCAG 2 cut(s) 324, 442
BspFNI CGCG 2 cut(s) 37, 110
BspLI GGNNCC 1 cut(s) 73
BspT107I GGYRCC 1 cut(s) 71
BspTNI GGTCTC 1 cut(s) 451
BssECI CCNNGG 2 cut(s) 84, 183
BssMI GATC 2 cut(s) 283, 489
BssNI GRCGYC 2 cut(s) 72, 138
Bst2UI CCWGG 1 cut(s) 184
Bst4CI ACNGT 3 cut(s) 217, 225, 290
Bst6I CTCTTC 1 cut(s) 263
BstACI GRCGYC 2 cut(s) 72, 138
BstC8I GCNNGC 2 cut(s) 106, 236
BstDEI CTNAG 3 cut(s) 164, 311, 429
BstDSI CCRYGG 1 cut(s) 84
BstF5I GGATG 2 cut(s) 80, 459
BstFNI CGCG 2 cut(s) 37, 110
BstH2I RGCGCY 1 cut(s) 75
BstHHI GCGC 2 cut(s) 74, 110
BstKTI GATC 2 cut(s) 286, 492
BstMAI GTCTC 2 cut(s) 410, 451
BstMBI GATC 2 cut(s) 283, 489
BstMWI GCNNNNNNNGC 1 cut(s) 27
BstNI CCWGG 1 cut(s) 184
BstNSI RCATGY 3 cut(s) 34, 131, 151
BstSCI CCNGG 1 cut(s) 182
BstSFI CTRYAG 1 cut(s) 216
BstUI CGCG 2 cut(s) 37, 110
BstV1I GCAGC 1 cut(s) 33
BstXI CCANNNNNNTGG 1 cut(s) 152
BsuRI GGCC 1 cut(s) 338
BtgI CCRYGG 1 cut(s) 84
BtsCI GGATG 2 cut(s) 80, 459
BtsIMutI CAGTG 2 cut(s) 132, 286
BtuMI TCGCGA 1 cut(s) 37
Cac8I GCNNGC 2 cut(s) 106, 236
CfoI GCGC 2 cut(s) 74, 110
Cfr13I GGNCC 1 cut(s) 336
CseI GACGC 1 cut(s) 99
Csp6I GTAC 2 cut(s) 221, 424
CviAII CATG 3 cut(s) 31, 128, 148
CviJI RGCY 7 cut(s) 157, 163, 294, 338, 405, 487, 546
CviKI_1 RGCY 7 cut(s) 157, 163, 294, 338, 405, 487, 546
CviQI GTAC 2 cut(s) 221, 424
DdeI CTNAG 3 cut(s) 164, 311, 429
DinI GGCGCC 1 cut(s) 73
DpnI GATC 2 cut(s) 285, 491
DpnII GATC 2 cut(s) 283, 489
DriI GACNNNNNGTC 1 cut(s) 44
Eam1104I CTCTTC 1 cut(s) 263
Eam1105I GACNNNNNGTC 1 cut(s) 44
EarI CTCTTC 1 cut(s) 263
Eco24I GRGCYC 1 cut(s) 159
Eco31I GGTCTC 1 cut(s) 451
Eco88I CYCGRG 2 cut(s) 158, 265
EcoRII CCWGG 1 cut(s) 182
EcoT38I GRGCYC 1 cut(s) 159
EgeI GGCGCC 1 cut(s) 73
EheI GGCGCC 1 cut(s) 73
FaeI CATG 3 cut(s) 34, 131, 151
FaiI YATR 5 cut(s) 32, 129, 149, 297, 497
FatI CATG 3 cut(s) 30, 127, 147
FbaI TGATCA 2 cut(s) 283, 489
Fnu4HI GCNGC 1 cut(s) 22
FokI GGATG 2 cut(s) 67, 466
FriOI GRGCYC 1 cut(s) 159
Fsp4HI GCNGC 1 cut(s) 22
FspBI CTAG 1 cut(s) 547
GlaI GCGC 2 cut(s) 73, 109
GluI GCNGC 1 cut(s) 22
GsaI CCCAGC 2 cut(s) 234, 375
HaeII RGCGCY 1 cut(s) 75
HaeIII GGCC 1 cut(s) 338
HgaI GACGC 1 cut(s) 99
HhaI GCGC 2 cut(s) 74, 110
Hin1I GRCGYC 2 cut(s) 72, 138
Hin1II CATG 3 cut(s) 34, 131, 151
Hin6I GCGC 2 cut(s) 72, 108
HinP1I GCGC 2 cut(s) 72, 108
HinfI GANTC 4 cut(s) 243, 315, 350, 436
Hpy188I TCNGA 2 cut(s) 314, 432
Hpy188III TCNNGA 3 cut(s) 36, 265, 531
Hpy99I CGWCG 1 cut(s) 143
HpyAV CCTTC 1 cut(s) 395
HpyCH4III ACNGT 3 cut(s) 217, 225, 290
HpyCH4IV ACGT 1 cut(s) 138
HpyCH4V TGCA 4 cut(s) 104, 475, 502, 514
HpyF10VI GCNNNNNNNGC 1 cut(s) 27
HpyF3I CTNAG 3 cut(s) 164, 311, 429
HpySE526I ACGT 1 cut(s) 138
Hsp92I GRCGYC 2 cut(s) 72, 138
Hsp92II CATG 3 cut(s) 34, 131, 151
HspAI GCGC 2 cut(s) 72, 108
KasI GGCGCC 1 cut(s) 71
Ksp22I TGATCA 2 cut(s) 283, 489
Kzo9I GATC 2 cut(s) 283, 489
LmnI GCTCC 1 cut(s) 102
LpnPI CCDG 7 cut(s) 40, 90, 169, 196, 244, 357, 516
Lsp1109I GCAGC 1 cut(s) 33
LweI GCATC 1 cut(s) 247
MaeI CTAG 1 cut(s) 547
MaeII ACGT 1 cut(s) 138
MaeIII GTNAC 2 cut(s) 130, 211
MalI GATC 2 cut(s) 285, 491
MboI GATC 2 cut(s) 283, 489
MboII GAAGA 4 cut(s) 184, 216, 250, 546
MhlI GDGCHC 1 cut(s) 159
MluCI AATT 3 cut(s) 191, 441, 509
Mly113I GGCGCC 1 cut(s) 72
MlyI GAGTC 1 cut(s) 237
MroXI GAANNNNTTC 1 cut(s) 405
MslI CAYNNNNRTG 3 cut(s) 29, 150, 497
MspR9I CCNGG 1 cut(s) 184
MvaI CCWGG 1 cut(s) 184
MvnI CGCG 2 cut(s) 37, 110
MwoI GCNNNNNNNGC 1 cut(s) 27
NarI GGCGCC 1 cut(s) 72
NdeII GATC 2 cut(s) 283, 489
NlaIII CATG 3 cut(s) 34, 131, 151
NlaIV GGNNCC 1 cut(s) 73
NmuCI GTSAC 1 cut(s) 130
NruI TCGCGA 1 cut(s) 37
NspI RCATGY 3 cut(s) 34, 131, 151
OliI CACNNNNGTG 1 cut(s) 150
PaeR7I CTCGAG 1 cut(s) 265
PciI ACATGT 1 cut(s) 147
PdmI GAANNNNTTC 1 cut(s) 405
PfeI GAWTC 3 cut(s) 315, 350, 436
PkrI GCNGC 1 cut(s) 23
PleI GAGTC 1 cut(s) 237
PluTI GGCGCC 1 cut(s) 75
PpsI GAGTC 1 cut(s) 237
PscI ACATGT 1 cut(s) 147
Psp6I CCWGG 1 cut(s) 182
PspFI CCCAGC 2 cut(s) 230, 371
PspGI CCWGG 1 cut(s) 182
PspN4I GGNNCC 1 cut(s) 73
PspPI GGNCC 1 cut(s) 336
RruI TCGCGA 1 cut(s) 37
RsaI GTAC 2 cut(s) 222, 425
RsaNI GTAC 2 cut(s) 221, 424
RseI CAYNNNNRTG 3 cut(s) 29, 150, 497
SatI GCNGC 1 cut(s) 22
Sau3AI GATC 2 cut(s) 283, 489
Sau96I GGNCC 1 cut(s) 336
SchI GAGTC 1 cut(s) 237
ScrFI CCNGG 1 cut(s) 184
SduI GDGCHC 1 cut(s) 159
SetI ASST 4 cut(s) 141, 170, 330, 548
SfaNI GCATC 1 cut(s) 247
SfcI CTRYAG 1 cut(s) 216
SfoI GGCGCC 1 cut(s) 73
Sfr274I CTCGAG 1 cut(s) 265
SlaI CTCGAG 1 cut(s) 265
SmiMI CAYNNNNRTG 3 cut(s) 29, 150, 497
SmlI CTYRAG 1 cut(s) 265
SmoI CTYRAG 1 cut(s) 265
Sse9I AATT 3 cut(s) 191, 441, 509
SspDI GGCGCC 1 cut(s) 71
SspMI CTAG 1 cut(s) 547
StyD4I CCNGG 1 cut(s) 182
TaaI ACNGT 3 cut(s) 217, 225, 290
TaiI ACGT 1 cut(s) 141
TaqI TCGA 3 cut(s) 241, 266, 348
TasI AATT 3 cut(s) 191, 441, 509
TatI WGTACW 1 cut(s) 423
TfiI GAWTC 3 cut(s) 315, 350, 436
TscAI CASTG 2 cut(s) 139, 293
TseFI GTSAC 1 cut(s) 130
TseI GCWGC 1 cut(s) 21
Tsp45I GTSAC 1 cut(s) 130
TspDTI ATGAA 3 cut(s) 69, 312, 414
TspGWI ACGGA 2 cut(s) 73, 404
TspRI CASTG 2 cut(s) 139, 293
XapI RAATTY 1 cut(s) 441
XceI RCATGY 3 cut(s) 34, 131, 151
XhoI CTCGAG 1 cut(s) 265
XmnI GAANNNNTTC 1 cut(s) 405
XspI CTAG 1 cut(s) 547
ZraI GACGTC 1 cut(s) 139
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.